Strain Fitness in Shewanella amazonensis SB2B around Sama_1488

Experiment: Benzalkonium Chloride 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Benzalkonium Chloride 0.004 mg/ml
1,801,492	+		Sama_1487	0.64	-0.7
1,801,492	+		Sama_1487	0.64	-1.2
1,801,492	+		Sama_1487	0.64	+1.2
1,801,493	-		Sama_1487	0.64	-0.1
1,801,792	-		Sama_1487	0.76	+1.9
1,801,859	+		Sama_1487	0.79	+0.3
1,801,859	+		Sama_1487	0.79	+0.8
1,801,859	+		Sama_1487	0.79	+0.2
1,801,921	+		Sama_1487	0.81	-1.5
1,801,948	-		Sama_1487	0.82	-0.4
1,801,953	+		Sama_1487	0.82	-1.0
1,801,954	-		Sama_1487	0.82	+0.0
1,801,954	-		Sama_1487	0.82	+0.6
1,801,954	-		Sama_1487	0.82	+1.6
1,801,983	+		Sama_1487	0.84	+1.3
1,801,983	+		Sama_1487	0.84	-1.0
1,801,983	+		Sama_1487	0.84	-0.5
1,801,983	+		Sama_1487	0.84	-0.9
1,801,983	+		Sama_1487	0.84	+1.2
1,801,983	+		Sama_1487	0.84	+0.3
1,801,983	+		Sama_1487	0.84	-1.1
1,801,984	-		Sama_1487	0.84	+0.0
1,801,984	-		Sama_1487	0.84	-0.2
1,801,984	-		Sama_1487	0.84	+0.1
1,801,984	-		Sama_1487	0.84	-0.2
1,801,986	+		Sama_1487	0.84	-1.0
1,801,986	+		Sama_1487	0.84	-0.5
1,801,987	-		Sama_1487	0.84	+0.5
1,802,133	+		Sama_1487	0.90	+0.1
1,802,220	-				+0.2
1,802,227	+				+0.3
1,802,389	-				+0.4
1,802,419	-				-3.5
1,802,469	+				+0.5
1,802,469	+				+0.6
1,802,469	+				+0.5
1,802,618	-		Sama_1488	0.26	-1.6
1,802,618	-		Sama_1488	0.26	-1.2
1,802,645	+		Sama_1488	0.29	+0.5
1,802,658	-		Sama_1488	0.31	+1.1
1,802,658	-		Sama_1488	0.31	+1.8
1,802,672	-		Sama_1488	0.32	-0.8
1,802,788	+		Sama_1488	0.45	-0.9
1,802,789	-		Sama_1488	0.45	+0.4
1,802,804	-		Sama_1488	0.47	-0.2
1,802,872	+		Sama_1488	0.55	+0.2
1,802,928	+		Sama_1488	0.61	-0.3
1,802,928	+		Sama_1488	0.61	+0.9
1,802,932	-		Sama_1488	0.61	+0.2
1,803,068	+		Sama_1488	0.77	+0.5
1,803,141	+		Sama_1488	0.85	-2.1
1,803,142	-		Sama_1488	0.85	-1.2
1,803,161	+		Sama_1488	0.87	+1.4
1,803,161	+		Sama_1488	0.87	+0.1
1,803,241	+				-1.1
1,803,241	+				-0.0
1,803,242	-				+0.1
1,803,242	-				-0.5
1,803,263	+				-0.3
1,803,264	-				-1.6
1,803,266	+				-0.0
1,803,267	-				+1.1
1,803,267	-				-3.6
1,803,267	-				-2.0
1,803,267	-				+0.4
1,803,267	-				-0.9
1,803,274	+				+0.9
1,803,275	-				-2.5
1,803,275	-				+0.1
1,803,300	+				-1.1
1,803,300	+				+0.6
1,803,301	-				+1.9
1,803,301	-				-0.4
1,803,301	-				-0.4
1,803,308	+				-1.1
1,803,308	+				+1.9
1,803,308	+				+0.9
1,803,309	-				-3.2
1,803,309	-				-0.6
1,803,309	-				+1.4
1,803,309	-				-0.2
1,803,309	-				+0.2
1,803,309	-				+1.5
1,803,309	-				+0.4
1,803,309	-				+0.5
1,803,309	-				+1.8
1,803,310	+				-1.8
1,803,310	+				+0.4
1,803,311	-				-1.1
1,803,319	+				+0.7
1,803,319	+				+0.4
1,803,319	+				-0.6
1,803,319	+				-1.8
1,803,320	-				+0.9
1,803,320	-				+0.5
1,803,320	-				+0.4
1,803,325	+				-0.2
1,803,325	+				+0.9
1,803,326	-				+0.8
1,803,326	-				+0.1
1,803,605	+	folX	Sama_1489	0.74	+0.3
1,803,864	+				+0.2
1,803,864	+				-0.7
1,803,909	+		Sama_1490	0.12	-1.7
1,803,910	-		Sama_1490	0.12	-0.7
1,804,073	-		Sama_1490	0.27	-0.8
1,804,127	+		Sama_1490	0.32	+0.6
1,804,128	-		Sama_1490	0.32	-0.5
1,804,263	+		Sama_1490	0.45	-1.1
1,804,263	+		Sama_1490	0.45	+0.0
1,804,264	-		Sama_1490	0.45	-1.0
1,804,264	-		Sama_1490	0.45	-0.7
1,804,264	-		Sama_1490	0.45	-0.7
1,804,264	-		Sama_1490	0.45	+0.7
1,804,268	+		Sama_1490	0.45	+0.3
1,804,269	-		Sama_1490	0.45	-2.0