Experiment: Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0417 and Sama_0418 are separated by 345 nucleotides Sama_0418 and uvrD are separated by 149 nucleotides
Sama_0417: Sama_0417 - homocysteine S-methyltransferase (RefSeq), at 513,399 to 514,343
_0417
Sama_0418: Sama_0418 - putative transcriptional regulator, CadC (RefSeq), at 514,689 to 515,582
_0418
Sama_0419: uvrD - DNA-dependent helicase II (RefSeq), at 515,732 to 517,897
uvrD
Position (kb) 514
515
516 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 513.721 kb on + strand, within Sama_0417 at 513.721 kb on + strand, within Sama_0417 at 513.721 kb on + strand, within Sama_0417 at 513.721 kb on + strand, within Sama_0417 at 513.722 kb on - strand, within Sama_0417 at 513.722 kb on - strand, within Sama_0417 at 513.767 kb on + strand, within Sama_0417 at 513.768 kb on - strand, within Sama_0417 at 513.790 kb on - strand, within Sama_0417 at 513.922 kb on + strand, within Sama_0417 at 513.923 kb on - strand, within Sama_0417 at 513.923 kb on - strand, within Sama_0417 at 513.923 kb on - strand, within Sama_0417 at 514.050 kb on + strand, within Sama_0417 at 514.050 kb on + strand, within Sama_0417 at 514.050 kb on + strand, within Sama_0417 at 514.051 kb on - strand, within Sama_0417 at 514.051 kb on - strand, within Sama_0417 at 514.051 kb on - strand, within Sama_0417 at 514.059 kb on + strand, within Sama_0417 at 514.059 kb on + strand, within Sama_0417 at 514.064 kb on + strand, within Sama_0417 at 514.065 kb on - strand, within Sama_0417 at 514.065 kb on - strand, within Sama_0417 at 514.070 kb on + strand, within Sama_0417 at 514.070 kb on + strand, within Sama_0417 at 514.070 kb on + strand, within Sama_0417 at 514.071 kb on - strand, within Sama_0417 at 514.071 kb on - strand, within Sama_0417 at 514.071 kb on - strand, within Sama_0417 at 514.071 kb on - strand, within Sama_0417 at 514.178 kb on - strand, within Sama_0417 at 514.230 kb on + strand, within Sama_0417 at 514.230 kb on + strand, within Sama_0417 at 514.230 kb on + strand, within Sama_0417 at 514.230 kb on + strand, within Sama_0417 at 514.256 kb on + strand at 514.256 kb on + strand at 514.256 kb on + strand at 514.290 kb on - strand at 514.290 kb on - strand at 514.315 kb on + strand at 514.315 kb on + strand at 514.316 kb on - strand at 514.316 kb on - strand at 514.316 kb on - strand at 514.331 kb on + strand at 514.332 kb on - strand at 514.332 kb on - strand at 514.355 kb on + strand at 514.355 kb on + strand at 514.356 kb on - strand at 514.357 kb on + strand at 514.357 kb on + strand at 514.357 kb on + strand at 514.357 kb on + strand at 514.357 kb on + strand at 514.358 kb on - strand at 514.358 kb on - strand at 514.369 kb on + strand at 514.369 kb on + strand at 514.369 kb on + strand at 514.370 kb on - strand at 514.382 kb on + strand at 514.383 kb on - strand at 514.393 kb on + strand at 514.393 kb on + strand at 514.394 kb on - strand at 514.419 kb on + strand at 514.420 kb on - strand at 514.420 kb on - strand at 514.422 kb on + strand at 514.423 kb on - strand at 514.423 kb on - strand at 514.439 kb on + strand at 514.439 kb on + strand at 514.439 kb on + strand at 514.439 kb on + strand at 514.439 kb on + strand at 514.439 kb on + strand at 514.439 kb on + strand at 514.440 kb on - strand at 514.440 kb on - strand at 514.440 kb on - strand at 514.456 kb on + strand at 514.599 kb on + strand at 514.599 kb on + strand at 514.600 kb on - strand at 514.627 kb on + strand at 514.627 kb on + strand at 514.628 kb on - strand at 514.628 kb on - strand at 514.628 kb on - strand at 514.628 kb on - strand at 514.680 kb on + strand at 514.722 kb on - strand at 514.756 kb on - strand at 514.756 kb on - strand at 514.860 kb on + strand, within Sama_0418 at 514.860 kb on + strand, within Sama_0418 at 514.863 kb on + strand, within Sama_0418 at 514.863 kb on + strand, within Sama_0418 at 514.864 kb on - strand, within Sama_0418 at 514.864 kb on - strand, within Sama_0418 at 514.864 kb on - strand, within Sama_0418 at 514.864 kb on - strand, within Sama_0418 at 514.871 kb on - strand, within Sama_0418 at 514.871 kb on - strand, within Sama_0418 at 514.871 kb on - strand, within Sama_0418 at 514.955 kb on + strand, within Sama_0418 at 514.975 kb on + strand, within Sama_0418 at 514.975 kb on + strand, within Sama_0418 at 514.975 kb on + strand, within Sama_0418 at 514.976 kb on - strand, within Sama_0418 at 514.981 kb on + strand, within Sama_0418 at 514.981 kb on + strand, within Sama_0418 at 514.981 kb on + strand, within Sama_0418 at 514.981 kb on + strand, within Sama_0418 at 514.982 kb on - strand, within Sama_0418 at 514.982 kb on - strand, within Sama_0418 at 514.982 kb on - strand, within Sama_0418 at 514.982 kb on - strand, within Sama_0418 at 514.982 kb on - strand, within Sama_0418 at 514.982 kb on - strand, within Sama_0418 at 514.993 kb on - strand, within Sama_0418 at 515.013 kb on - strand, within Sama_0418 at 515.013 kb on - strand, within Sama_0418 at 515.013 kb on - strand, within Sama_0418 at 515.024 kb on + strand, within Sama_0418 at 515.025 kb on - strand, within Sama_0418 at 515.026 kb on + strand, within Sama_0418 at 515.026 kb on + strand, within Sama_0418 at 515.026 kb on + strand, within Sama_0418 at 515.027 kb on - strand, within Sama_0418 at 515.027 kb on - strand, within Sama_0418 at 515.036 kb on + strand, within Sama_0418 at 515.059 kb on - strand, within Sama_0418 at 515.130 kb on + strand, within Sama_0418 at 515.130 kb on + strand, within Sama_0418 at 515.130 kb on + strand, within Sama_0418 at 515.130 kb on + strand, within Sama_0418 at 515.130 kb on + strand, within Sama_0418 at 515.130 kb on + strand, within Sama_0418 at 515.131 kb on - strand, within Sama_0418 at 515.131 kb on - strand, within Sama_0418 at 515.131 kb on - strand, within Sama_0418 at 515.131 kb on - strand, within Sama_0418 at 515.161 kb on + strand, within Sama_0418 at 515.161 kb on + strand, within Sama_0418 at 515.161 kb on + strand, within Sama_0418 at 515.161 kb on + strand, within Sama_0418 at 515.161 kb on + strand, within Sama_0418 at 515.161 kb on + strand, within Sama_0418 at 515.161 kb on + strand, within Sama_0418 at 515.161 kb on + strand, within Sama_0418 at 515.162 kb on - strand, within Sama_0418 at 515.162 kb on - strand, within Sama_0418 at 515.162 kb on - strand, within Sama_0418 at 515.162 kb on - strand, within Sama_0418 at 515.363 kb on + strand, within Sama_0418 at 515.378 kb on + strand, within Sama_0418 at 515.379 kb on - strand, within Sama_0418 at 515.379 kb on - strand, within Sama_0418 at 515.379 kb on - strand, within Sama_0418 at 515.412 kb on - strand, within Sama_0418 at 515.461 kb on + strand, within Sama_0418 at 515.527 kb on + strand at 515.527 kb on + strand at 515.528 kb on - strand at 515.528 kb on - strand at 515.528 kb on - strand at 515.528 kb on - strand at 515.528 kb on - strand at 515.567 kb on - strand at 515.575 kb on + strand at 515.575 kb on + strand at 515.575 kb on + strand at 515.575 kb on + strand at 515.575 kb on + strand at 515.575 kb on + strand at 515.575 kb on + strand at 515.576 kb on - strand at 515.576 kb on - strand at 515.576 kb on - strand at 515.576 kb on - strand at 515.576 kb on - strand at 515.624 kb on + strand at 515.624 kb on + strand at 515.625 kb on - strand at 515.625 kb on - strand at 515.625 kb on - strand at 515.629 kb on + strand at 515.700 kb on + strand at 515.700 kb on + strand at 515.701 kb on - strand at 515.701 kb on - strand at 515.701 kb on - strand at 515.701 kb on - strand at 515.702 kb on + strand at 515.702 kb on + strand at 515.702 kb on + strand at 515.702 kb on + strand at 515.703 kb on - strand at 515.703 kb on - strand at 515.703 kb on - strand at 515.703 kb on - strand at 515.767 kb on + strand at 515.768 kb on - strand at 515.768 kb on - strand at 515.991 kb on + strand, within uvrD at 515.991 kb on + strand, within uvrD at 515.991 kb on + strand, within uvrD at 515.991 kb on + strand, within uvrD at 515.991 kb on + strand, within uvrD at 515.992 kb on - strand, within uvrD at 515.992 kb on - strand, within uvrD at 515.995 kb on + strand, within uvrD at 515.995 kb on + strand, within uvrD at 515.995 kb on + strand, within uvrD at 515.995 kb on + strand, within uvrD at 516.164 kb on + strand, within uvrD at 516.164 kb on + strand, within uvrD at 516.164 kb on + strand, within uvrD at 516.166 kb on + strand, within uvrD at 516.166 kb on + strand, within uvrD at 516.166 kb on + strand, within uvrD at 516.167 kb on - strand, within uvrD at 516.167 kb on - strand, within uvrD at 516.205 kb on + strand, within uvrD at 516.207 kb on + strand, within uvrD at 516.207 kb on + strand, within uvrD at 516.207 kb on + strand, within uvrD at 516.208 kb on - strand, within uvrD at 516.208 kb on - strand, within uvrD at 516.208 kb on - strand, within uvrD at 516.208 kb on - strand, within uvrD at 516.208 kb on - strand, within uvrD at 516.226 kb on + strand, within uvrD at 516.251 kb on + strand, within uvrD at 516.256 kb on + strand, within uvrD at 516.256 kb on + strand, within uvrD at 516.256 kb on + strand, within uvrD at 516.256 kb on + strand, within uvrD at 516.257 kb on - strand, within uvrD at 516.257 kb on - strand, within uvrD at 516.257 kb on - strand, within uvrD at 516.260 kb on + strand, within uvrD at 516.260 kb on + strand, within uvrD at 516.337 kb on + strand, within uvrD at 516.338 kb on - strand, within uvrD at 516.359 kb on + strand, within uvrD at 516.380 kb on - strand, within uvrD at 516.380 kb on - strand, within uvrD at 516.419 kb on + strand, within uvrD at 516.420 kb on - strand, within uvrD at 516.562 kb on - strand, within uvrD at 516.562 kb on - strand, within uvrD at 516.562 kb on - strand, within uvrD
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.004 mg/ml remove 513,721 + Sama_0417 0.34 +1.2 513,721 + Sama_0417 0.34 +1.8 513,721 + Sama_0417 0.34 -2.2 513,721 + Sama_0417 0.34 -0.9 513,722 - Sama_0417 0.34 -0.4 513,722 - Sama_0417 0.34 +0.6 513,767 + Sama_0417 0.39 +0.3 513,768 - Sama_0417 0.39 +0.5 513,790 - Sama_0417 0.41 +0.4 513,922 + Sama_0417 0.55 -0.2 513,923 - Sama_0417 0.55 -3.4 513,923 - Sama_0417 0.55 +0.8 513,923 - Sama_0417 0.55 -0.7 514,050 + Sama_0417 0.69 +0.1 514,050 + Sama_0417 0.69 -0.0 514,050 + Sama_0417 0.69 -0.6 514,051 - Sama_0417 0.69 -0.7 514,051 - Sama_0417 0.69 -1.2 514,051 - Sama_0417 0.69 +1.1 514,059 + Sama_0417 0.70 +0.8 514,059 + Sama_0417 0.70 +0.5 514,064 + Sama_0417 0.70 +0.8 514,065 - Sama_0417 0.70 +0.5 514,065 - Sama_0417 0.70 +1.0 514,070 + Sama_0417 0.71 -1.8 514,070 + Sama_0417 0.71 +3.6 514,070 + Sama_0417 0.71 +1.5 514,071 - Sama_0417 0.71 +0.5 514,071 - Sama_0417 0.71 +0.8 514,071 - Sama_0417 0.71 +1.6 514,071 - Sama_0417 0.71 +0.1 514,178 - Sama_0417 0.82 +1.1 514,230 + Sama_0417 0.88 +0.5 514,230 + Sama_0417 0.88 +0.6 514,230 + Sama_0417 0.88 -0.1 514,230 + Sama_0417 0.88 +0.6 514,256 + +0.0 514,256 + +0.8 514,256 + -1.5 514,290 - +0.1 514,290 - -1.4 514,315 + -1.9 514,315 + +0.2 514,316 - +1.4 514,316 - -1.0 514,316 - +0.3 514,331 + +0.4 514,332 - -0.2 514,332 - +0.4 514,355 + -2.3 514,355 + +0.4 514,356 - -2.4 514,357 + +0.8 514,357 + +0.1 514,357 + -0.4 514,357 + +0.8 514,357 + -0.3 514,358 - -0.4 514,358 - -0.4 514,369 + +0.1 514,369 + -1.8 514,369 + +1.8 514,370 - -1.3 514,382 + +0.2 514,383 - +1.0 514,393 + -0.2 514,393 + +0.0 514,394 - -0.8 514,419 + +0.6 514,420 - -1.0 514,420 - -0.3 514,422 + +0.6 514,423 - -0.8 514,423 - +1.1 514,439 + -0.2 514,439 + -0.1 514,439 + -0.5 514,439 + +0.3 514,439 + -2.3 514,439 + +0.6 514,439 + -1.4 514,440 - -0.3 514,440 - +0.1 514,440 - +2.8 514,456 + +2.4 514,599 + -0.2 514,599 + +0.5 514,600 - -0.3 514,627 + +1.5 514,627 + +0.7 514,628 - -0.8 514,628 - +0.4 514,628 - -1.4 514,628 - +0.4 514,680 + +0.5 514,722 - +0.3 514,756 - -1.2 514,756 - +0.4 514,860 + Sama_0418 0.19 +0.7 514,860 + Sama_0418 0.19 +0.2 514,863 + Sama_0418 0.19 +0.4 514,863 + Sama_0418 0.19 +0.1 514,864 - Sama_0418 0.20 +0.8 514,864 - Sama_0418 0.20 -1.4 514,864 - Sama_0418 0.20 -0.6 514,864 - Sama_0418 0.20 -0.8 514,871 - Sama_0418 0.20 -0.8 514,871 - Sama_0418 0.20 -0.0 514,871 - Sama_0418 0.20 -0.8 514,955 + Sama_0418 0.30 +1.1 514,975 + Sama_0418 0.32 +0.6 514,975 + Sama_0418 0.32 +0.1 514,975 + Sama_0418 0.32 -2.7 514,976 - Sama_0418 0.32 +0.5 514,981 + Sama_0418 0.33 -1.2 514,981 + Sama_0418 0.33 +1.2 514,981 + Sama_0418 0.33 +0.3 514,981 + Sama_0418 0.33 -0.8 514,982 - Sama_0418 0.33 -2.0 514,982 - Sama_0418 0.33 -1.5 514,982 - Sama_0418 0.33 +0.7 514,982 - Sama_0418 0.33 -2.1 514,982 - Sama_0418 0.33 -0.0 514,982 - Sama_0418 0.33 -0.8 514,993 - Sama_0418 0.34 +1.4 515,013 - Sama_0418 0.36 -0.1 515,013 - Sama_0418 0.36 -3.0 515,013 - Sama_0418 0.36 -0.5 515,024 + Sama_0418 0.37 +1.1 515,025 - Sama_0418 0.38 -0.2 515,026 + Sama_0418 0.38 +0.8 515,026 + Sama_0418 0.38 -0.3 515,026 + Sama_0418 0.38 +1.5 515,027 - Sama_0418 0.38 +1.5 515,027 - Sama_0418 0.38 -2.2 515,036 + Sama_0418 0.39 -1.2 515,059 - Sama_0418 0.41 -0.0 515,130 + Sama_0418 0.49 +1.0 515,130 + Sama_0418 0.49 -0.3 515,130 + Sama_0418 0.49 -0.1 515,130 + Sama_0418 0.49 -0.8 515,130 + Sama_0418 0.49 -1.1 515,130 + Sama_0418 0.49 -0.6 515,131 - Sama_0418 0.49 +0.4 515,131 - Sama_0418 0.49 -0.7 515,131 - Sama_0418 0.49 +2.1 515,131 - Sama_0418 0.49 +2.1 515,161 + Sama_0418 0.53 +0.3 515,161 + Sama_0418 0.53 -0.3 515,161 + Sama_0418 0.53 +0.2 515,161 + Sama_0418 0.53 -0.2 515,161 + Sama_0418 0.53 -1.9 515,161 + Sama_0418 0.53 -0.0 515,161 + Sama_0418 0.53 -1.0 515,161 + Sama_0418 0.53 +0.3 515,162 - Sama_0418 0.53 -0.2 515,162 - Sama_0418 0.53 +1.5 515,162 - Sama_0418 0.53 +2.7 515,162 - Sama_0418 0.53 -0.1 515,363 + Sama_0418 0.75 -0.2 515,378 + Sama_0418 0.77 +0.4 515,379 - Sama_0418 0.77 -0.9 515,379 - Sama_0418 0.77 -1.5 515,379 - Sama_0418 0.77 +0.1 515,412 - Sama_0418 0.81 +0.1 515,461 + Sama_0418 0.86 -1.2 515,527 + +0.5 515,527 + +0.8 515,528 - -0.2 515,528 - -1.2 515,528 - +0.2 515,528 - -0.9 515,528 - -1.4 515,567 - +0.9 515,575 + +0.9 515,575 + +0.6 515,575 + +2.6 515,575 + +0.4 515,575 + -0.4 515,575 + -0.2 515,575 + -1.3 515,576 - +1.8 515,576 - +0.1 515,576 - -2.4 515,576 - +0.4 515,576 - -1.0 515,624 + +0.2 515,624 + +2.2 515,625 - -2.4 515,625 - -1.9 515,625 - -0.5 515,629 + +1.7 515,700 + -1.2 515,700 + +0.4 515,701 - +0.2 515,701 - -1.9 515,701 - -0.3 515,701 - +0.2 515,702 + +0.2 515,702 + -0.5 515,702 + -0.6 515,702 + -1.4 515,703 - -2.7 515,703 - -1.5 515,703 - -2.2 515,703 - -2.2 515,767 + -0.7 515,768 - -1.2 515,768 - -2.8 515,991 + uvrD Sama_0419 0.12 +0.6 515,991 + uvrD Sama_0419 0.12 -1.5 515,991 + uvrD Sama_0419 0.12 -0.9 515,991 + uvrD Sama_0419 0.12 -0.2 515,991 + uvrD Sama_0419 0.12 -0.8 515,992 - uvrD Sama_0419 0.12 +0.2 515,992 - uvrD Sama_0419 0.12 -0.8 515,995 + uvrD Sama_0419 0.12 -2.0 515,995 + uvrD Sama_0419 0.12 -1.8 515,995 + uvrD Sama_0419 0.12 -0.3 515,995 + uvrD Sama_0419 0.12 +0.4 516,164 + uvrD Sama_0419 0.20 -1.9 516,164 + uvrD Sama_0419 0.20 +0.1 516,164 + uvrD Sama_0419 0.20 -1.1 516,166 + uvrD Sama_0419 0.20 -0.6 516,166 + uvrD Sama_0419 0.20 -1.8 516,166 + uvrD Sama_0419 0.20 -0.3 516,167 - uvrD Sama_0419 0.20 -0.8 516,167 - uvrD Sama_0419 0.20 -0.8 516,205 + uvrD Sama_0419 0.22 -2.5 516,207 + uvrD Sama_0419 0.22 -1.8 516,207 + uvrD Sama_0419 0.22 -2.5 516,207 + uvrD Sama_0419 0.22 +1.1 516,208 - uvrD Sama_0419 0.22 -1.5 516,208 - uvrD Sama_0419 0.22 -1.5 516,208 - uvrD Sama_0419 0.22 -2.2 516,208 - uvrD Sama_0419 0.22 -2.1 516,208 - uvrD Sama_0419 0.22 +0.2 516,226 + uvrD Sama_0419 0.23 -1.2 516,251 + uvrD Sama_0419 0.24 -2.2 516,256 + uvrD Sama_0419 0.24 -3.1 516,256 + uvrD Sama_0419 0.24 -0.4 516,256 + uvrD Sama_0419 0.24 +0.1 516,256 + uvrD Sama_0419 0.24 -0.7 516,257 - uvrD Sama_0419 0.24 -1.5 516,257 - uvrD Sama_0419 0.24 +0.6 516,257 - uvrD Sama_0419 0.24 -2.4 516,260 + uvrD Sama_0419 0.24 -0.2 516,260 + uvrD Sama_0419 0.24 +0.3 516,337 + uvrD Sama_0419 0.28 +0.3 516,338 - uvrD Sama_0419 0.28 -1.5 516,359 + uvrD Sama_0419 0.29 -0.3 516,380 - uvrD Sama_0419 0.30 -2.2 516,380 - uvrD Sama_0419 0.30 -0.2 516,419 + uvrD Sama_0419 0.32 -1.4 516,420 - uvrD Sama_0419 0.32 -2.0 516,562 - uvrD Sama_0419 0.38 -2.2 516,562 - uvrD Sama_0419 0.38 -2.4 516,562 - uvrD Sama_0419 0.38 -1.7
Or see this region's nucleotide sequence