Strain Fitness in Shewanella amazonensis SB2B around Sama_0238

Experiment: Benzalkonium Chloride 0.004 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSama_0236 and rpsD are separated by 31 nucleotidesrpsD and Sama_0238 are separated by 24 nucleotidesSama_0238 and rplQ are separated by 39 nucleotidesrplQ and Sama_0240 are separated by 55 nucleotides Sama_0236: Sama_0236 - 30S ribosomal protein S11 (RefSeq), at 263,009 to 263,401 _0236 Sama_0237: rpsD - 30S ribosomal protein S4 (RefSeq), at 263,433 to 264,053 rpsD Sama_0238: Sama_0238 - DNA-directed RNA polymerase subunit alpha (RefSeq), at 264,078 to 265,067 _0238 Sama_0239: rplQ - 50S ribosomal protein L17 (RefSeq), at 265,107 to 265,502 rplQ Sama_0240: Sama_0240 - hypothetical protein (RefSeq), at 265,558 to 266,529 _0240 Position (kb) 264 265 266Strain fitness (log2 ratio) -2 -1 0 1 2 3at 265.560 kb on - strandat 265.560 kb on - strandat 265.560 kb on - strandat 265.668 kb on - strand, within Sama_0240at 265.668 kb on - strand, within Sama_0240at 265.671 kb on + strand, within Sama_0240at 265.671 kb on + strand, within Sama_0240at 265.672 kb on - strand, within Sama_0240at 265.693 kb on + strand, within Sama_0240at 265.694 kb on - strand, within Sama_0240at 265.694 kb on - strand, within Sama_0240at 265.694 kb on - strand, within Sama_0240at 265.694 kb on - strand, within Sama_0240at 265.696 kb on - strand, within Sama_0240at 265.698 kb on + strand, within Sama_0240at 265.698 kb on + strand, within Sama_0240at 265.698 kb on + strand, within Sama_0240at 265.698 kb on + strand, within Sama_0240at 265.699 kb on - strand, within Sama_0240at 265.699 kb on - strand, within Sama_0240at 265.699 kb on - strand, within Sama_0240at 265.736 kb on + strand, within Sama_0240at 265.751 kb on + strand, within Sama_0240at 265.751 kb on + strand, within Sama_0240at 265.751 kb on + strand, within Sama_0240at 265.752 kb on - strand, within Sama_0240at 265.752 kb on - strand, within Sama_0240at 265.752 kb on - strand, within Sama_0240at 265.759 kb on + strand, within Sama_0240at 265.759 kb on + strand, within Sama_0240at 265.759 kb on + strand, within Sama_0240at 265.759 kb on + strand, within Sama_0240at 265.759 kb on + strand, within Sama_0240at 265.759 kb on + strand, within Sama_0240at 265.759 kb on + strand, within Sama_0240at 265.759 kb on + strand, within Sama_0240at 265.759 kb on + strand, within Sama_0240at 265.759 kb on + strand, within Sama_0240at 265.760 kb on - strand, within Sama_0240at 265.760 kb on - strand, within Sama_0240at 265.760 kb on - strand, within Sama_0240at 265.760 kb on - strand, within Sama_0240at 265.760 kb on - strand, within Sama_0240at 265.760 kb on - strand, within Sama_0240at 265.760 kb on - strand, within Sama_0240at 265.760 kb on - strand, within Sama_0240at 265.760 kb on - strand, within Sama_0240at 265.760 kb on - strand, within Sama_0240at 265.760 kb on - strand, within Sama_0240at 265.760 kb on - strand, within Sama_0240at 265.760 kb on - strand, within Sama_0240at 265.760 kb on - strand, within Sama_0240at 265.765 kb on - strand, within Sama_0240at 265.815 kb on + strand, within Sama_0240at 265.815 kb on + strand, within Sama_0240at 265.815 kb on + strand, within Sama_0240at 265.815 kb on + strand, within Sama_0240at 265.815 kb on + strand, within Sama_0240at 265.815 kb on + strand, within Sama_0240at 265.815 kb on + strand, within Sama_0240at 265.815 kb on + strand, within Sama_0240at 265.816 kb on - strand, within Sama_0240at 265.816 kb on - strand, within Sama_0240at 265.816 kb on - strand, within Sama_0240at 265.816 kb on - strand, within Sama_0240at 265.816 kb on - strand, within Sama_0240at 265.816 kb on - strand, within Sama_0240at 265.816 kb on - strand, within Sama_0240at 265.816 kb on - strand, within Sama_0240at 265.816 kb on - strand, within Sama_0240at 265.816 kb on - strand, within Sama_0240at 265.816 kb on - strand, within Sama_0240at 265.823 kb on + strand, within Sama_0240at 265.823 kb on + strand, within Sama_0240at 265.824 kb on - strand, within Sama_0240at 265.824 kb on - strand, within Sama_0240at 265.833 kb on + strand, within Sama_0240at 265.833 kb on + strand, within Sama_0240at 265.833 kb on + strand, within Sama_0240at 265.833 kb on + strand, within Sama_0240at 265.834 kb on - strand, within Sama_0240at 265.834 kb on - strand, within Sama_0240at 265.834 kb on - strand, within Sama_0240at 265.854 kb on + strand, within Sama_0240at 265.854 kb on + strand, within Sama_0240at 265.855 kb on - strand, within Sama_0240at 265.855 kb on - strand, within Sama_0240at 265.855 kb on - strand, within Sama_0240at 265.856 kb on + strand, within Sama_0240at 265.856 kb on + strand, within Sama_0240at 265.856 kb on + strand, within Sama_0240at 265.856 kb on + strand, within Sama_0240at 265.856 kb on + strand, within Sama_0240at 265.856 kb on + strand, within Sama_0240at 265.857 kb on - strand, within Sama_0240at 265.857 kb on - strand, within Sama_0240at 265.857 kb on - strand, within Sama_0240at 265.857 kb on - strand, within Sama_0240at 265.857 kb on - strand, within Sama_0240at 265.857 kb on - strand, within Sama_0240at 265.882 kb on - strand, within Sama_0240at 265.882 kb on - strand, within Sama_0240at 265.886 kb on + strand, within Sama_0240at 265.887 kb on - strand, within Sama_0240at 265.910 kb on + strand, within Sama_0240at 265.911 kb on - strand, within Sama_0240at 265.972 kb on + strand, within Sama_0240at 265.972 kb on + strand, within Sama_0240at 265.973 kb on - strand, within Sama_0240at 265.973 kb on - strand, within Sama_0240at 265.973 kb on - strand, within Sama_0240at 265.973 kb on - strand, within Sama_0240at 265.986 kb on + strand, within Sama_0240at 265.986 kb on + strand, within Sama_0240at 265.986 kb on + strand, within Sama_0240at 265.987 kb on - strand, within Sama_0240at 265.987 kb on - strand, within Sama_0240at 265.999 kb on + strand, within Sama_0240at 266.000 kb on - strand, within Sama_0240at 266.000 kb on - strand, within Sama_0240at 266.000 kb on - strand, within Sama_0240at 266.000 kb on - strand, within Sama_0240at 266.000 kb on - strand, within Sama_0240at 266.000 kb on - strand, within Sama_0240at 266.003 kb on + strand, within Sama_0240at 266.003 kb on + strand, within Sama_0240at 266.003 kb on + strand, within Sama_0240at 266.003 kb on + strand, within Sama_0240at 266.003 kb on + strand, within Sama_0240at 266.004 kb on - strand, within Sama_0240at 266.004 kb on - strand, within Sama_0240at 266.004 kb on - strand, within Sama_0240at 266.004 kb on - strand, within Sama_0240at 266.004 kb on - strand, within Sama_0240at 266.004 kb on - strand, within Sama_0240at 266.004 kb on - strand, within Sama_0240at 266.047 kb on - strand, within Sama_0240at 266.047 kb on - strand, within Sama_0240at 266.062 kb on + strand, within Sama_0240at 266.062 kb on + strand, within Sama_0240at 266.063 kb on - strand, within Sama_0240at 266.063 kb on - strand, within Sama_0240at 266.063 kb on - strand, within Sama_0240

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.004 mg/ml
remove
265,560 - -1.1
265,560 - +0.1
265,560 - +0.0
265,668 - Sama_0240 0.11 -0.5
265,668 - Sama_0240 0.11 +1.1
265,671 + Sama_0240 0.12 +0.1
265,671 + Sama_0240 0.12 -2.1
265,672 - Sama_0240 0.12 -0.1
265,693 + Sama_0240 0.14 +2.0
265,694 - Sama_0240 0.14 +0.9
265,694 - Sama_0240 0.14 -0.5
265,694 - Sama_0240 0.14 +0.0
265,694 - Sama_0240 0.14 +0.7
265,696 - Sama_0240 0.14 -1.2
265,698 + Sama_0240 0.14 -1.4
265,698 + Sama_0240 0.14 -0.1
265,698 + Sama_0240 0.14 +0.0
265,698 + Sama_0240 0.14 +0.9
265,699 - Sama_0240 0.15 -0.3
265,699 - Sama_0240 0.15 +0.8
265,699 - Sama_0240 0.15 +0.4
265,736 + Sama_0240 0.18 +0.2
265,751 + Sama_0240 0.20 +1.2
265,751 + Sama_0240 0.20 -0.9
265,751 + Sama_0240 0.20 +0.4
265,752 - Sama_0240 0.20 -0.1
265,752 - Sama_0240 0.20 +0.9
265,752 - Sama_0240 0.20 +0.6
265,759 + Sama_0240 0.21 -0.8
265,759 + Sama_0240 0.21 +0.6
265,759 + Sama_0240 0.21 +2.1
265,759 + Sama_0240 0.21 -1.1
265,759 + Sama_0240 0.21 -0.3
265,759 + Sama_0240 0.21 +0.1
265,759 + Sama_0240 0.21 -0.6
265,759 + Sama_0240 0.21 -0.8
265,759 + Sama_0240 0.21 -0.2
265,759 + Sama_0240 0.21 -0.0
265,760 - Sama_0240 0.21 +1.4
265,760 - Sama_0240 0.21 +0.4
265,760 - Sama_0240 0.21 -0.8
265,760 - Sama_0240 0.21 -0.1
265,760 - Sama_0240 0.21 -0.5
265,760 - Sama_0240 0.21 +0.6
265,760 - Sama_0240 0.21 +0.5
265,760 - Sama_0240 0.21 -0.5
265,760 - Sama_0240 0.21 +1.3
265,760 - Sama_0240 0.21 +0.2
265,760 - Sama_0240 0.21 +0.3
265,760 - Sama_0240 0.21 +0.5
265,760 - Sama_0240 0.21 -1.7
265,760 - Sama_0240 0.21 -0.6
265,765 - Sama_0240 0.21 +0.8
265,815 + Sama_0240 0.26 +0.0
265,815 + Sama_0240 0.26 -1.4
265,815 + Sama_0240 0.26 +0.5
265,815 + Sama_0240 0.26 +0.9
265,815 + Sama_0240 0.26 +0.2
265,815 + Sama_0240 0.26 +0.5
265,815 + Sama_0240 0.26 +0.9
265,815 + Sama_0240 0.26 -0.8
265,816 - Sama_0240 0.27 -0.3
265,816 - Sama_0240 0.27 -0.9
265,816 - Sama_0240 0.27 +0.3
265,816 - Sama_0240 0.27 -2.4
265,816 - Sama_0240 0.27 +0.9
265,816 - Sama_0240 0.27 -0.1
265,816 - Sama_0240 0.27 +0.0
265,816 - Sama_0240 0.27 +2.2
265,816 - Sama_0240 0.27 +0.3
265,816 - Sama_0240 0.27 +1.6
265,816 - Sama_0240 0.27 +0.2
265,823 + Sama_0240 0.27 +0.3
265,823 + Sama_0240 0.27 -1.1
265,824 - Sama_0240 0.27 -0.4
265,824 - Sama_0240 0.27 +0.2
265,833 + Sama_0240 0.28 -0.6
265,833 + Sama_0240 0.28 +0.1
265,833 + Sama_0240 0.28 +0.2
265,833 + Sama_0240 0.28 +1.5
265,834 - Sama_0240 0.28 +1.6
265,834 - Sama_0240 0.28 -1.2
265,834 - Sama_0240 0.28 +0.3
265,854 + Sama_0240 0.30 +1.7
265,854 + Sama_0240 0.30 -0.5
265,855 - Sama_0240 0.31 +1.7
265,855 - Sama_0240 0.31 -1.2
265,855 - Sama_0240 0.31 -0.3
265,856 + Sama_0240 0.31 +0.3
265,856 + Sama_0240 0.31 +0.5
265,856 + Sama_0240 0.31 +0.7
265,856 + Sama_0240 0.31 -0.8
265,856 + Sama_0240 0.31 +0.7
265,856 + Sama_0240 0.31 -1.1
265,857 - Sama_0240 0.31 -0.3
265,857 - Sama_0240 0.31 +0.0
265,857 - Sama_0240 0.31 -1.3
265,857 - Sama_0240 0.31 -2.3
265,857 - Sama_0240 0.31 +0.7
265,857 - Sama_0240 0.31 +1.2
265,882 - Sama_0240 0.33 -1.0
265,882 - Sama_0240 0.33 -0.1
265,886 + Sama_0240 0.34 -0.4
265,887 - Sama_0240 0.34 +0.2
265,910 + Sama_0240 0.36 +0.3
265,911 - Sama_0240 0.36 -0.8
265,972 + Sama_0240 0.43 -2.3
265,972 + Sama_0240 0.43 -0.2
265,973 - Sama_0240 0.43 +1.7
265,973 - Sama_0240 0.43 +1.6
265,973 - Sama_0240 0.43 +1.4
265,973 - Sama_0240 0.43 +2.7
265,986 + Sama_0240 0.44 -0.8
265,986 + Sama_0240 0.44 -0.8
265,986 + Sama_0240 0.44 -0.1
265,987 - Sama_0240 0.44 +0.2
265,987 - Sama_0240 0.44 +0.1
265,999 + Sama_0240 0.45 +0.0
266,000 - Sama_0240 0.45 -1.0
266,000 - Sama_0240 0.45 -1.1
266,000 - Sama_0240 0.45 -1.2
266,000 - Sama_0240 0.45 +0.0
266,000 - Sama_0240 0.45 -1.0
266,000 - Sama_0240 0.45 -1.1
266,003 + Sama_0240 0.46 -1.0
266,003 + Sama_0240 0.46 +0.9
266,003 + Sama_0240 0.46 -0.3
266,003 + Sama_0240 0.46 -0.4
266,003 + Sama_0240 0.46 -0.8
266,004 - Sama_0240 0.46 +0.2
266,004 - Sama_0240 0.46 +1.3
266,004 - Sama_0240 0.46 +0.2
266,004 - Sama_0240 0.46 +0.0
266,004 - Sama_0240 0.46 +2.8
266,004 - Sama_0240 0.46 -0.2
266,004 - Sama_0240 0.46 +0.2
266,047 - Sama_0240 0.50 -0.3
266,047 - Sama_0240 0.50 -0.1
266,062 + Sama_0240 0.52 -0.2
266,062 + Sama_0240 0.52 +0.0
266,063 - Sama_0240 0.52 -0.1
266,063 - Sama_0240 0.52 -1.4
266,063 - Sama_0240 0.52 +0.8

Or see this region's nucleotide sequence