Experiment: NAG (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0916 and SO0917 are separated by 154 nucleotides SO0917 and aac are separated by 282 nucleotides
SO0916: SO0916 - transcriptional regulator, MarR family (NCBI ptt file), at 944,481 to 945,410
SO0916
SO0917: SO0917 - conserved hypothetical protein TIGR00258 (NCBI ptt file), at 945,565 to 946,104
SO0917
SO0918: aac - aculeacin A acylase (NCBI ptt file), at 946,387 to 948,954
aac
Position (kb) 945
946
947 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 944.565 kb on + strand at 944.567 kb on - strand at 944.620 kb on - strand, within SO0916 at 944.625 kb on + strand, within SO0916 at 944.652 kb on + strand, within SO0916 at 944.772 kb on + strand, within SO0916 at 944.780 kb on - strand, within SO0916 at 944.864 kb on + strand, within SO0916 at 944.879 kb on - strand, within SO0916 at 944.995 kb on + strand, within SO0916 at 945.043 kb on + strand, within SO0916 at 945.043 kb on + strand, within SO0916 at 945.043 kb on + strand, within SO0916 at 945.051 kb on - strand, within SO0916 at 945.251 kb on + strand, within SO0916 at 945.289 kb on + strand, within SO0916 at 945.289 kb on + strand, within SO0916 at 945.297 kb on - strand, within SO0916 at 945.302 kb on - strand, within SO0916 at 945.331 kb on + strand at 945.342 kb on + strand at 945.383 kb on + strand at 945.383 kb on + strand at 945.383 kb on + strand at 945.391 kb on - strand at 945.391 kb on - strand at 945.615 kb on - strand at 945.645 kb on + strand, within SO0917 at 945.653 kb on - strand, within SO0917 at 945.695 kb on + strand, within SO0917 at 945.695 kb on + strand, within SO0917 at 945.695 kb on + strand, within SO0917 at 945.721 kb on + strand, within SO0917 at 945.721 kb on + strand, within SO0917 at 945.721 kb on + strand, within SO0917 at 945.769 kb on + strand, within SO0917 at 945.769 kb on + strand, within SO0917 at 945.777 kb on - strand, within SO0917 at 945.801 kb on - strand, within SO0917 at 945.980 kb on - strand, within SO0917 at 945.980 kb on - strand, within SO0917 at 946.161 kb on + strand at 946.161 kb on + strand at 946.271 kb on + strand at 946.274 kb on + strand at 946.495 kb on + strand at 946.502 kb on + strand at 946.683 kb on - strand, within aac at 946.719 kb on + strand, within aac at 946.726 kb on + strand, within aac at 946.727 kb on - strand, within aac at 946.815 kb on - strand, within aac at 946.829 kb on + strand, within aac at 946.903 kb on - strand, within aac at 946.920 kb on + strand, within aac at 946.933 kb on - strand, within aac at 946.986 kb on - strand, within aac at 947.071 kb on - strand, within aac
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (N) remove 944,565 + -0.0 944,567 - +1.0 944,620 - SO0916 0.15 -1.8 944,625 + SO0916 0.15 +1.0 944,652 + SO0916 0.18 -0.1 944,772 + SO0916 0.31 +0.4 944,780 - SO0916 0.32 -0.5 944,864 + SO0916 0.41 +2.1 944,879 - SO0916 0.43 +0.3 944,995 + SO0916 0.55 +1.1 945,043 + SO0916 0.60 -0.1 945,043 + SO0916 0.60 +0.6 945,043 + SO0916 0.60 -1.2 945,051 - SO0916 0.61 +0.7 945,251 + SO0916 0.83 -0.0 945,289 + SO0916 0.87 -0.1 945,289 + SO0916 0.87 -0.0 945,297 - SO0916 0.88 -2.5 945,302 - SO0916 0.88 +0.2 945,331 + -0.8 945,342 + -0.9 945,383 + -0.4 945,383 + +1.1 945,383 + -0.5 945,391 - +1.0 945,391 - +2.0 945,615 - +1.4 945,645 + SO0917 0.15 +2.2 945,653 - SO0917 0.16 -0.9 945,695 + SO0917 0.24 +2.1 945,695 + SO0917 0.24 +1.3 945,695 + SO0917 0.24 +0.7 945,721 + SO0917 0.29 -3.5 945,721 + SO0917 0.29 +0.1 945,721 + SO0917 0.29 +1.3 945,769 + SO0917 0.38 +0.6 945,769 + SO0917 0.38 +0.5 945,777 - SO0917 0.39 +1.6 945,801 - SO0917 0.44 -0.0 945,980 - SO0917 0.77 +0.1 945,980 - SO0917 0.77 -0.5 946,161 + +0.5 946,161 + +2.9 946,271 + -1.5 946,274 + -0.0 946,495 + +1.3 946,502 + +0.1 946,683 - aac SO0918 0.12 -1.9 946,719 + aac SO0918 0.13 -0.6 946,726 + aac SO0918 0.13 -0.3 946,727 - aac SO0918 0.13 -1.5 946,815 - aac SO0918 0.17 +0.7 946,829 + aac SO0918 0.17 -0.1 946,903 - aac SO0918 0.20 +0.5 946,920 + aac SO0918 0.21 +0.9 946,933 - aac SO0918 0.21 +1.0 946,986 - aac SO0918 0.23 +0.5 947,071 - aac SO0918 0.27 +0.8
Or see this region's nucleotide sequence