Strain Fitness in Shewanella oneidensis MR-1 around SO0433

Experiment: NAG (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntacnB and rsd are separated by 165 nucleotidesrsd and hemE are separated by 458 nucleotides SO0432: acnB - aconitate hydratase 2 (NCBI ptt file), at 455,780 to 458,377 acnB SO0433: rsd - regulator of sigma D (NCBI ptt file), at 458,543 to 459,028 rsd SO0435: hemE - uroporphyrinogen decarboxylase (NCBI ptt file), at 459,487 to 460,551 hemE Position (kb) 458 459 460Strain fitness (log2 ratio) -2 -1 0 1 2 3at 458.510 kb on + strandat 458.548 kb on - strandat 458.576 kb on + strandat 458.576 kb on + strandat 458.599 kb on + strand, within rsdat 458.624 kb on + strand, within rsdat 458.625 kb on + strand, within rsdat 458.655 kb on + strand, within rsdat 458.705 kb on + strand, within rsdat 458.713 kb on - strand, within rsdat 458.713 kb on - strand, within rsdat 458.713 kb on - strand, within rsdat 458.804 kb on + strand, within rsdat 458.812 kb on + strand, within rsdat 458.812 kb on + strand, within rsdat 458.812 kb on - strand, within rsdat 458.823 kb on + strand, within rsdat 458.867 kb on - strand, within rsdat 458.901 kb on + strand, within rsdat 458.901 kb on + strand, within rsdat 458.901 kb on + strand, within rsdat 458.903 kb on - strand, within rsdat 458.908 kb on - strand, within rsdat 458.970 kb on + strand, within rsdat 458.978 kb on - strand, within rsdat 459.058 kb on + strandat 459.058 kb on + strandat 459.086 kb on - strandat 459.204 kb on + strandat 459.204 kb on + strandat 459.212 kb on - strandat 459.248 kb on - strandat 459.250 kb on + strandat 459.277 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (N)
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458,510 + -0.0
458,548 - +0.2
458,576 + -0.6
458,576 + +0.1
458,599 + rsd SO0433 0.12 +0.0
458,624 + rsd SO0433 0.17 +0.9
458,625 + rsd SO0433 0.17 +1.3
458,655 + rsd SO0433 0.23 -0.1
458,705 + rsd SO0433 0.33 -2.6
458,713 - rsd SO0433 0.35 +0.6
458,713 - rsd SO0433 0.35 +1.7
458,713 - rsd SO0433 0.35 -0.5
458,804 + rsd SO0433 0.54 -0.2
458,812 + rsd SO0433 0.55 +0.9
458,812 + rsd SO0433 0.55 +0.9
458,812 - rsd SO0433 0.55 +0.1
458,823 + rsd SO0433 0.58 -0.8
458,867 - rsd SO0433 0.67 +0.4
458,901 + rsd SO0433 0.74 -0.6
458,901 + rsd SO0433 0.74 +0.2
458,901 + rsd SO0433 0.74 -0.1
458,903 - rsd SO0433 0.74 -0.1
458,908 - rsd SO0433 0.75 +0.1
458,970 + rsd SO0433 0.88 -2.2
458,978 - rsd SO0433 0.90 +1.8
459,058 + -1.2
459,058 + +0.7
459,086 - -0.3
459,204 + +1.7
459,204 + +0.2
459,212 - +0.3
459,248 - +0.6
459,250 + +2.9
459,277 + +1.0

Or see this region's nucleotide sequence