Strain Fitness in Shewanella oneidensis MR-1 around SO0369

Experiment: NAG (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0368 and SO0369 are separated by 11 nucleotidesSO0369 and SO0370 are separated by 234 nucleotidesSO0370 and SO0371 are separated by 22 nucleotides SO0368: SO0368 - helicase (NCBI ptt file), at 379,805 to 382,753 SO0368 SO0369: SO0369 - transcriptional regulator, LysR family (NCBI ptt file), at 382,765 to 383,652 SO0369 SO0370: SO0370 - conserved hypothetical protein (NCBI ptt file), at 383,887 to 384,378 SO0370 SO0371: SO0371 - conserved hypothetical protein (NCBI ptt file), at 384,401 to 384,862 SO0371 Position (kb) 382 383 384Strain fitness (log2 ratio) -2 -1 0 1 2 3at 381.797 kb on + strand, within SO0368at 381.814 kb on - strand, within SO0368at 381.858 kb on - strand, within SO0368at 381.896 kb on + strand, within SO0368at 381.901 kb on + strand, within SO0368at 381.915 kb on + strand, within SO0368at 381.963 kb on - strand, within SO0368at 381.967 kb on - strand, within SO0368at 381.967 kb on - strand, within SO0368at 381.967 kb on - strand, within SO0368at 381.967 kb on - strand, within SO0368at 381.977 kb on - strand, within SO0368at 381.977 kb on - strand, within SO0368at 381.979 kb on - strand, within SO0368at 382.013 kb on - strand, within SO0368at 382.013 kb on - strand, within SO0368at 382.071 kb on + strand, within SO0368at 382.091 kb on - strand, within SO0368at 382.097 kb on + strand, within SO0368at 382.097 kb on + strand, within SO0368at 382.097 kb on + strand, within SO0368at 382.105 kb on - strand, within SO0368at 382.105 kb on - strand, within SO0368at 382.136 kb on - strand, within SO0368at 382.137 kb on - strand, within SO0368at 382.147 kb on - strand, within SO0368at 382.148 kb on - strand, within SO0368at 382.155 kb on + strand, within SO0368at 382.155 kb on - strand, within SO0368at 382.163 kb on - strand, within SO0368at 382.183 kb on + strand, within SO0368at 382.276 kb on - strand, within SO0368at 382.289 kb on - strand, within SO0368at 382.294 kb on - strand, within SO0368at 382.298 kb on + strand, within SO0368at 382.298 kb on + strand, within SO0368at 382.298 kb on + strand, within SO0368at 382.306 kb on - strand, within SO0368at 382.306 kb on - strand, within SO0368at 382.402 kb on + strand, within SO0368at 382.452 kb on + strand, within SO0368at 382.470 kb on - strandat 382.489 kb on - strandat 382.516 kb on + strandat 382.516 kb on + strandat 382.516 kb on + strandat 382.516 kb on + strandat 382.524 kb on - strandat 382.524 kb on - strandat 382.524 kb on - strandat 382.524 kb on - strandat 382.524 kb on - strandat 382.524 kb on - strandat 382.524 kb on - strandat 382.537 kb on + strandat 382.545 kb on - strandat 382.561 kb on + strandat 382.646 kb on + strandat 382.653 kb on - strandat 382.673 kb on - strandat 382.673 kb on - strandat 382.673 kb on - strandat 382.681 kb on - strandat 382.709 kb on - strandat 382.710 kb on - strandat 382.869 kb on + strand, within SO0369at 382.870 kb on + strand, within SO0369at 382.878 kb on - strand, within SO0369at 382.880 kb on - strand, within SO0369at 382.926 kb on - strand, within SO0369at 382.961 kb on + strand, within SO0369at 382.961 kb on + strand, within SO0369at 382.961 kb on + strand, within SO0369at 382.969 kb on - strand, within SO0369at 382.969 kb on - strand, within SO0369at 382.971 kb on + strand, within SO0369at 383.006 kb on + strand, within SO0369at 383.006 kb on + strand, within SO0369at 383.006 kb on + strand, within SO0369at 383.006 kb on + strand, within SO0369at 383.006 kb on + strand, within SO0369at 383.014 kb on - strand, within SO0369at 383.014 kb on - strand, within SO0369at 383.039 kb on - strand, within SO0369at 383.141 kb on - strand, within SO0369at 383.143 kb on + strand, within SO0369at 383.190 kb on + strand, within SO0369at 383.203 kb on - strand, within SO0369at 383.232 kb on + strand, within SO0369at 383.358 kb on + strand, within SO0369at 383.418 kb on + strand, within SO0369at 383.436 kb on - strand, within SO0369at 383.519 kb on + strand, within SO0369at 383.524 kb on + strand, within SO0369at 383.571 kb on + strandat 383.571 kb on + strandat 383.651 kb on + strandat 383.656 kb on + strandat 383.664 kb on - strandat 383.736 kb on + strandat 383.744 kb on - strandat 383.757 kb on - strandat 383.881 kb on + strandat 383.889 kb on - strandat 383.921 kb on + strandat 383.921 kb on + strandat 383.929 kb on - strandat 383.929 kb on - strandat 383.929 kb on - strandat 383.986 kb on + strand, within SO0370at 383.986 kb on + strand, within SO0370at 383.988 kb on + strand, within SO0370at 383.988 kb on + strand, within SO0370at 383.991 kb on - strand, within SO0370at 383.996 kb on - strand, within SO0370at 384.000 kb on + strand, within SO0370at 384.188 kb on - strand, within SO0370at 384.188 kb on - strand, within SO0370at 384.232 kb on - strand, within SO0370at 384.253 kb on + strand, within SO0370at 384.321 kb on + strand, within SO0370at 384.425 kb on - strandat 384.427 kb on + strandat 384.435 kb on - strandat 384.435 kb on - strandat 384.435 kb on - strandat 384.446 kb on + strandat 384.481 kb on + strand, within SO0371at 384.494 kb on - strand, within SO0371at 384.533 kb on - strand, within SO0371at 384.594 kb on - strand, within SO0371at 384.604 kb on - strand, within SO0371at 384.607 kb on + strand, within SO0371at 384.615 kb on - strand, within SO0371

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (N)
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381,797 + SO0368 0.68 -1.6
381,814 - SO0368 0.68 -0.7
381,858 - SO0368 0.70 -0.2
381,896 + SO0368 0.71 +1.8
381,901 + SO0368 0.71 -1.7
381,915 + SO0368 0.72 -0.5
381,963 - SO0368 0.73 -1.4
381,967 - SO0368 0.73 -2.0
381,967 - SO0368 0.73 -0.1
381,967 - SO0368 0.73 +1.5
381,967 - SO0368 0.73 -0.1
381,977 - SO0368 0.74 +2.8
381,977 - SO0368 0.74 +0.6
381,979 - SO0368 0.74 -0.3
382,013 - SO0368 0.75 +0.4
382,013 - SO0368 0.75 +1.1
382,071 + SO0368 0.77 +0.9
382,091 - SO0368 0.78 +2.7
382,097 + SO0368 0.78 -0.8
382,097 + SO0368 0.78 -1.0
382,097 + SO0368 0.78 -1.4
382,105 - SO0368 0.78 -1.6
382,105 - SO0368 0.78 +1.6
382,136 - SO0368 0.79 +0.6
382,137 - SO0368 0.79 +0.2
382,147 - SO0368 0.79 -0.2
382,148 - SO0368 0.79 +1.0
382,155 + SO0368 0.80 +1.1
382,155 - SO0368 0.80 +0.4
382,163 - SO0368 0.80 -0.2
382,183 + SO0368 0.81 -1.0
382,276 - SO0368 0.84 -0.4
382,289 - SO0368 0.84 -1.0
382,294 - SO0368 0.84 -0.1
382,298 + SO0368 0.85 -0.8
382,298 + SO0368 0.85 -0.6
382,298 + SO0368 0.85 +1.7
382,306 - SO0368 0.85 -0.9
382,306 - SO0368 0.85 +0.9
382,402 + SO0368 0.88 -0.8
382,452 + SO0368 0.90 -0.9
382,470 - +0.2
382,489 - +0.9
382,516 + -0.4
382,516 + -0.7
382,516 + +0.6
382,516 + -1.2
382,524 - +0.7
382,524 - +0.3
382,524 - -1.0
382,524 - -0.3
382,524 - -0.2
382,524 - -1.9
382,524 - -0.8
382,537 + -0.1
382,545 - -0.6
382,561 + +0.3
382,646 + +0.4
382,653 - +0.7
382,673 - +1.8
382,673 - +0.3
382,673 - -0.8
382,681 - +0.8
382,709 - +1.9
382,710 - +1.9
382,869 + SO0369 0.12 +0.1
382,870 + SO0369 0.12 +0.2
382,878 - SO0369 0.13 +0.2
382,880 - SO0369 0.13 +0.4
382,926 - SO0369 0.18 +1.6
382,961 + SO0369 0.22 +0.2
382,961 + SO0369 0.22 -0.0
382,961 + SO0369 0.22 -1.0
382,969 - SO0369 0.23 -1.7
382,969 - SO0369 0.23 -0.8
382,971 + SO0369 0.23 +0.2
383,006 + SO0369 0.27 +0.3
383,006 + SO0369 0.27 +0.7
383,006 + SO0369 0.27 +0.8
383,006 + SO0369 0.27 -2.1
383,006 + SO0369 0.27 +0.3
383,014 - SO0369 0.28 +0.1
383,014 - SO0369 0.28 +0.6
383,039 - SO0369 0.31 +0.6
383,141 - SO0369 0.42 +1.8
383,143 + SO0369 0.43 +0.5
383,190 + SO0369 0.48 +1.0
383,203 - SO0369 0.49 -0.1
383,232 + SO0369 0.53 +2.1
383,358 + SO0369 0.67 -0.1
383,418 + SO0369 0.74 -0.7
383,436 - SO0369 0.76 +2.1
383,519 + SO0369 0.85 +1.0
383,524 + SO0369 0.85 +0.7
383,571 + -0.2
383,571 + +0.1
383,651 + +1.0
383,656 + -0.2
383,664 - -0.1
383,736 + +0.2
383,744 - +0.8
383,757 - +1.6
383,881 + -1.6
383,889 - -1.9
383,921 + -0.0
383,921 + +0.0
383,929 - -0.7
383,929 - -0.1
383,929 - +2.8
383,986 + SO0370 0.20 -0.9
383,986 + SO0370 0.20 +1.2
383,988 + SO0370 0.21 +1.1
383,988 + SO0370 0.21 -0.5
383,991 - SO0370 0.21 -0.7
383,996 - SO0370 0.22 +0.1
384,000 + SO0370 0.23 -0.5
384,188 - SO0370 0.61 +0.3
384,188 - SO0370 0.61 +1.4
384,232 - SO0370 0.70 -2.7
384,253 + SO0370 0.74 +1.6
384,321 + SO0370 0.88 +0.7
384,425 - -0.1
384,427 + -1.0
384,435 - +1.2
384,435 - -0.1
384,435 - -1.7
384,446 + -0.2
384,481 + SO0371 0.17 +1.9
384,494 - SO0371 0.20 +1.2
384,533 - SO0371 0.29 -0.5
384,594 - SO0371 0.42 -0.4
384,604 - SO0371 0.44 -0.5
384,607 + SO0371 0.45 +0.1
384,615 - SO0371 0.46 -0.2

Or see this region's nucleotide sequence