Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c09240

Experiment: D-Cellobiose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c09220 and PGA1_c09230 are separated by 238 nucleotidesPGA1_c09230 and PGA1_c09240 overlap by 4 nucleotidesPGA1_c09240 and PGA1_c09250 are separated by 34 nucleotidesPGA1_c09250 and PGA1_c09260 are separated by 225 nucleotides PGA1_c09220: PGA1_c09220 - Predicted CoA-binding protein, at 946,196 to 946,666 _c09220 PGA1_c09230: PGA1_c09230 - phosphoribosyl-ATP pyrophosphatase HisE, at 946,905 to 947,222 _c09230 PGA1_c09240: PGA1_c09240 - imidazole glycerol phosphate synthase subunit HisF, at 947,219 to 947,980 _c09240 PGA1_c09250: PGA1_c09250 - Protein of unknown function (DUF2867)., at 948,015 to 948,497 _c09250 PGA1_c09260: PGA1_c09260 - Uncharacterized conserved protein, at 948,723 to 949,169 _c09260 Position (kb) 947 948Strain fitness (log2 ratio) -2 -1 0 1at 946.266 kb on - strand, within PGA1_c09220at 946.269 kb on + strand, within PGA1_c09220at 946.329 kb on - strand, within PGA1_c09220at 946.371 kb on - strand, within PGA1_c09220at 946.382 kb on + strand, within PGA1_c09220at 946.451 kb on - strand, within PGA1_c09220at 946.483 kb on + strand, within PGA1_c09220at 946.518 kb on + strand, within PGA1_c09220at 946.518 kb on + strand, within PGA1_c09220at 946.518 kb on + strand, within PGA1_c09220at 946.528 kb on + strand, within PGA1_c09220at 946.546 kb on + strand, within PGA1_c09220at 946.567 kb on - strand, within PGA1_c09220at 946.616 kb on + strand, within PGA1_c09220at 946.878 kb on + strandat 948.010 kb on + strandat 948.020 kb on - strandat 948.054 kb on - strandat 948.054 kb on - strandat 948.093 kb on - strand, within PGA1_c09250at 948.115 kb on + strand, within PGA1_c09250at 948.160 kb on + strand, within PGA1_c09250at 948.227 kb on + strand, within PGA1_c09250at 948.235 kb on - strand, within PGA1_c09250at 948.235 kb on - strand, within PGA1_c09250at 948.245 kb on + strand, within PGA1_c09250at 948.245 kb on + strand, within PGA1_c09250at 948.252 kb on + strand, within PGA1_c09250at 948.252 kb on + strand, within PGA1_c09250at 948.253 kb on - strand, within PGA1_c09250at 948.344 kb on - strand, within PGA1_c09250at 948.436 kb on + strand, within PGA1_c09250at 948.510 kb on + strandat 948.516 kb on - strandat 948.523 kb on - strandat 948.532 kb on + strandat 948.532 kb on + strandat 948.540 kb on - strandat 948.551 kb on - strandat 948.593 kb on + strandat 948.616 kb on + strandat 948.618 kb on - strandat 948.618 kb on - strandat 948.624 kb on - strandat 948.635 kb on + strandat 948.662 kb on + strandat 948.669 kb on + strandat 948.669 kb on + strandat 948.669 kb on + strandat 948.669 kb on + strandat 948.674 kb on + strandat 948.674 kb on + strandat 948.674 kb on + strandat 948.674 kb on + strandat 948.677 kb on - strandat 948.677 kb on - strandat 948.677 kb on - strandat 948.677 kb on - strandat 948.679 kb on + strandat 948.679 kb on + strandat 948.682 kb on - strandat 948.682 kb on - strandat 948.682 kb on - strandat 948.707 kb on + strandat 948.759 kb on + strandat 948.781 kb on + strand, within PGA1_c09260at 948.781 kb on + strand, within PGA1_c09260at 948.845 kb on - strand, within PGA1_c09260at 948.870 kb on + strand, within PGA1_c09260at 948.870 kb on + strand, within PGA1_c09260at 948.975 kb on - strand, within PGA1_c09260at 948.975 kb on - strand, within PGA1_c09260

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C)
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946,266 - PGA1_c09220 0.15 +0.5
946,269 + PGA1_c09220 0.15 -0.1
946,329 - PGA1_c09220 0.28 -0.2
946,371 - PGA1_c09220 0.37 -1.2
946,382 + PGA1_c09220 0.39 +0.4
946,451 - PGA1_c09220 0.54 -1.9
946,483 + PGA1_c09220 0.61 +0.4
946,518 + PGA1_c09220 0.68 -0.3
946,518 + PGA1_c09220 0.68 +0.4
946,518 + PGA1_c09220 0.68 +1.4
946,528 + PGA1_c09220 0.70 +1.1
946,546 + PGA1_c09220 0.74 -0.5
946,567 - PGA1_c09220 0.79 -0.2
946,616 + PGA1_c09220 0.89 -0.8
946,878 + +0.2
948,010 + -0.3
948,020 - +0.3
948,054 - +0.4
948,054 - -0.7
948,093 - PGA1_c09250 0.16 +0.3
948,115 + PGA1_c09250 0.21 +0.6
948,160 + PGA1_c09250 0.30 +0.7
948,227 + PGA1_c09250 0.44 -1.6
948,235 - PGA1_c09250 0.46 -1.2
948,235 - PGA1_c09250 0.46 +0.4
948,245 + PGA1_c09250 0.48 +0.2
948,245 + PGA1_c09250 0.48 +0.2
948,252 + PGA1_c09250 0.49 -0.5
948,252 + PGA1_c09250 0.49 +1.0
948,253 - PGA1_c09250 0.49 +0.4
948,344 - PGA1_c09250 0.68 +0.9
948,436 + PGA1_c09250 0.87 -0.8
948,510 + +0.7
948,516 - -0.5
948,523 - +0.0
948,532 + +0.3
948,532 + -0.9
948,540 - -0.1
948,551 - +0.7
948,593 + -0.6
948,616 + +0.3
948,618 - -0.8
948,618 - -0.5
948,624 - -0.2
948,635 + -1.2
948,662 + +0.7
948,669 + -0.3
948,669 + +0.8
948,669 + -0.6
948,669 + -2.0
948,674 + -0.7
948,674 + +1.4
948,674 + +0.5
948,674 + -0.5
948,677 - -0.4
948,677 - -1.0
948,677 - +0.2
948,677 - +0.4
948,679 + -1.1
948,679 + +0.1
948,682 - -0.1
948,682 - -0.4
948,682 - -1.5
948,707 + -1.1
948,759 + -0.5
948,781 + PGA1_c09260 0.13 -1.0
948,781 + PGA1_c09260 0.13 -1.4
948,845 - PGA1_c09260 0.27 +0.0
948,870 + PGA1_c09260 0.33 +0.2
948,870 + PGA1_c09260 0.33 -0.7
948,975 - PGA1_c09260 0.56 -1.3
948,975 - PGA1_c09260 0.56 -2.0

Or see this region's nucleotide sequence