Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3628

Experiment: Glucose defined media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3626 and Psest_3627 are separated by 25 nucleotidesPsest_3627 and Psest_3628 overlap by 4 nucleotidesPsest_3628 and Psest_3629 are separated by 119 nucleotidesPsest_3629 and Psest_3630 are separated by 135 nucleotides Psest_3626: Psest_3626 - hypothetical protein, at 3,788,114 to 3,788,791 _3626 Psest_3627: Psest_3627 - pantothenate kinase, type III, at 3,788,817 to 3,789,557 _3627 Psest_3628: Psest_3628 - birA, biotin-[acetyl-CoA-carboxylase] ligase region, at 3,789,554 to 3,790,501 _3628 Psest_3629: Psest_3629 - 5S rRNA, at 3,790,621 to 3,790,736 _3629 Psest_3630: Psest_3630 - 23S rRNA, at 3,790,872 to 3,793,758 _3630 Position (kb) 3789 3790 3791Strain fitness (log2 ratio) -2 -1 0 1at 3788.556 kb on - strand, within Psest_3626at 3788.685 kb on + strand, within Psest_3626at 3788.685 kb on + strand, within Psest_3626at 3788.685 kb on + strand, within Psest_3626at 3788.686 kb on - strand, within Psest_3626at 3788.772 kb on - strandat 3788.780 kb on + strandat 3788.805 kb on + strandat 3788.806 kb on - strandat 3788.806 kb on - strandat 3788.806 kb on - strandat 3788.806 kb on - strandat 3788.806 kb on - strandat 3788.810 kb on - strandat 3788.810 kb on - strandat 3788.810 kb on - strandat 3790.482 kb on - strandat 3790.482 kb on - strandat 3790.496 kb on - strandat 3790.496 kb on - strandat 3790.496 kb on - strandat 3790.526 kb on + strandat 3790.527 kb on - strandat 3790.553 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucose defined media
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3,788,556 - Psest_3626 0.65 -1.4
3,788,685 + Psest_3626 0.84 +0.6
3,788,685 + Psest_3626 0.84 -0.8
3,788,685 + Psest_3626 0.84 -0.4
3,788,686 - Psest_3626 0.84 -1.9
3,788,772 - -1.1
3,788,780 + -2.1
3,788,805 + -1.8
3,788,806 - -1.4
3,788,806 - -0.7
3,788,806 - -0.8
3,788,806 - -0.1
3,788,806 - -0.4
3,788,810 - -0.0
3,788,810 - +0.3
3,788,810 - -0.4
3,790,482 - +0.3
3,790,482 - -0.7
3,790,496 - +0.2
3,790,496 - +0.3
3,790,496 - +0.4
3,790,526 + -1.4
3,790,527 - +0.5
3,790,553 - +0.6

Or see this region's nucleotide sequence