Experiment: Glucose defined media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3626 and Psest_3627 are separated by 25 nucleotides Psest_3627 and Psest_3628 overlap by 4 nucleotides Psest_3628 and Psest_3629 are separated by 119 nucleotides Psest_3629 and Psest_3630 are separated by 135 nucleotides
Psest_3626: Psest_3626 - hypothetical protein, at 3,788,114 to 3,788,791
_3626
Psest_3627: Psest_3627 - pantothenate kinase, type III, at 3,788,817 to 3,789,557
_3627
Psest_3628: Psest_3628 - birA, biotin-[acetyl-CoA-carboxylase] ligase region, at 3,789,554 to 3,790,501
_3628
Psest_3629: Psest_3629 - 5S rRNA, at 3,790,621 to 3,790,736
_3629
Psest_3630: Psest_3630 - 23S rRNA, at 3,790,872 to 3,793,758
_3630
Position (kb)
3789
3790
3791 Strain fitness (log2 ratio)
-2
-1
0
1 at 3788.556 kb on - strand, within Psest_3626 at 3788.685 kb on + strand, within Psest_3626 at 3788.685 kb on + strand, within Psest_3626 at 3788.685 kb on + strand, within Psest_3626 at 3788.686 kb on - strand, within Psest_3626 at 3788.772 kb on - strand at 3788.780 kb on + strand at 3788.805 kb on + strand at 3788.806 kb on - strand at 3788.806 kb on - strand at 3788.806 kb on - strand at 3788.806 kb on - strand at 3788.806 kb on - strand at 3788.810 kb on - strand at 3788.810 kb on - strand at 3788.810 kb on - strand at 3790.482 kb on - strand at 3790.482 kb on - strand at 3790.496 kb on - strand at 3790.496 kb on - strand at 3790.496 kb on - strand at 3790.526 kb on + strand at 3790.527 kb on - strand at 3790.553 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glucose defined media remove 3,788,556 - Psest_3626 0.65 -1.4 3,788,685 + Psest_3626 0.84 +0.6 3,788,685 + Psest_3626 0.84 -0.8 3,788,685 + Psest_3626 0.84 -0.4 3,788,686 - Psest_3626 0.84 -1.9 3,788,772 - -1.1 3,788,780 + -2.1 3,788,805 + -1.8 3,788,806 - -1.4 3,788,806 - -0.7 3,788,806 - -0.8 3,788,806 - -0.1 3,788,806 - -0.4 3,788,810 - -0.0 3,788,810 - +0.3 3,788,810 - -0.4 3,790,482 - +0.3 3,790,482 - -0.7 3,790,496 - +0.2 3,790,496 - +0.3 3,790,496 - +0.4 3,790,526 + -1.4 3,790,527 - +0.5 3,790,553 - +0.6
Or see this region's nucleotide sequence