Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c22360

Experiment: D-Cellobiose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Cellobiose (C)
2,320,942	+				+0.1
2,320,952	+				+0.7
2,321,056	+		PGA1_c22340	0.36	-0.2
2,321,064	-		PGA1_c22340	0.39	+0.5
2,321,065	-		PGA1_c22340	0.39	+0.9
2,321,077	+		PGA1_c22340	0.43	+0.5
2,321,077	+		PGA1_c22340	0.43	-0.8
2,321,077	+		PGA1_c22340	0.43	+0.7
2,321,077	+		PGA1_c22340	0.43	-0.9
2,321,077	+		PGA1_c22340	0.43	+0.4
2,321,077	+		PGA1_c22340	0.43	-0.3
2,321,085	-		PGA1_c22340	0.46	-0.5
2,321,085	-		PGA1_c22340	0.46	+0.1
2,321,085	-		PGA1_c22340	0.46	+0.2
2,321,085	-		PGA1_c22340	0.46	+0.8
2,321,085	-		PGA1_c22340	0.46	-0.2
2,321,191	+		PGA1_c22340	0.79	+0.7
2,321,191	+		PGA1_c22340	0.79	+0.2
2,321,191	+		PGA1_c22340	0.79	-0.7
2,321,199	-		PGA1_c22340	0.82	-0.5
2,321,199	-		PGA1_c22340	0.82	-0.2
2,321,199	-		PGA1_c22340	0.82	+0.4
2,321,199	-		PGA1_c22340	0.82	-0.3
2,321,199	-		PGA1_c22340	0.82	+0.4
2,321,265	+				+0.5
2,321,266	-				+0.5
2,321,338	-				+0.9
2,321,368	+				+0.3
2,321,376	-				+0.6
2,321,380	+				-1.8
2,321,380	+				+0.4
2,321,388	-				+0.3
2,321,431	-		PGA1_c22350	0.10	+0.6
2,321,459	+		PGA1_c22350	0.16	+0.3
2,321,482	+		PGA1_c22350	0.21	+0.6
2,321,490	-		PGA1_c22350	0.23	+1.1
2,321,508	+		PGA1_c22350	0.27	+0.7
2,321,508	+		PGA1_c22350	0.27	+0.3
2,321,516	-		PGA1_c22350	0.28	+0.8
2,321,516	-		PGA1_c22350	0.28	+0.6
2,321,516	-		PGA1_c22350	0.28	+0.8
2,321,516	-		PGA1_c22350	0.28	+1.0
2,321,516	-		PGA1_c22350	0.28	+0.2
2,321,575	-		PGA1_c22350	0.41	+1.1
2,321,575	-		PGA1_c22350	0.41	+1.5
2,321,630	-		PGA1_c22350	0.52	+0.2
2,321,631	-		PGA1_c22350	0.53	-0.7
2,321,706	+		PGA1_c22350	0.69	+0.5
2,321,716	+		PGA1_c22350	0.71	-0.6
2,321,720	+		PGA1_c22350	0.72	-0.2
2,321,776	+		PGA1_c22350	0.83	+1.5
2,321,784	-		PGA1_c22350	0.85	-0.2
2,321,784	-		PGA1_c22350	0.85	-0.4
2,321,814	+				+0.9
2,321,822	-				-1.0
2,321,822	-				+0.4
2,321,822	-				+1.1
2,321,822	-				-0.2
2,321,822	-				-0.0
2,321,822	-				-0.3
2,321,831	-				-1.6
2,321,841	-				-0.2
2,321,871	+				+0.8
2,321,871	+				+0.5
2,321,879	-				-0.6
2,321,887	-				-1.4
2,321,918	+				+0.8
2,321,926	-				+0.4
2,322,004	-		PGA1_c22360	0.14	+0.3
2,322,023	-		PGA1_c22360	0.18	+0.5
2,322,055	+		PGA1_c22360	0.26	+0.0
2,322,055	+		PGA1_c22360	0.26	-1.0
2,322,055	+		PGA1_c22360	0.26	+0.2
2,322,060	+		PGA1_c22360	0.27	-0.1
2,322,109	+		PGA1_c22360	0.38	-0.2
2,322,117	-		PGA1_c22360	0.39	+0.1
2,322,130	+		PGA1_c22360	0.42	-0.2
2,322,137	-		PGA1_c22360	0.44	+0.7
2,322,138	-		PGA1_c22360	0.44	-0.1
2,322,138	-		PGA1_c22360	0.44	+0.5
2,322,169	+		PGA1_c22360	0.51	-2.2
2,322,177	-		PGA1_c22360	0.53	-0.4
2,322,204	+		PGA1_c22360	0.59	+0.3
2,322,244	+		PGA1_c22360	0.68	+0.7
2,322,252	-		PGA1_c22360	0.70	+0.1
2,322,272	-		PGA1_c22360	0.74	+0.9
2,322,292	+		PGA1_c22360	0.79	+0.4
2,322,363	+				+0.0
2,322,363	+				+0.1
2,322,363	+				+0.0
2,322,363	+				-0.1
2,322,363	+				-1.2
2,322,363	+				+0.7
2,322,363	+				-0.1
2,322,363	+				+0.2
2,322,363	+				-0.4
2,322,363	+				-0.7
2,322,363	+				+0.2
2,322,363	+				+1.1
2,322,363	+				-0.3
2,322,363	+				+0.3
2,322,363	+				-0.5
2,322,363	+				-1.2
2,322,363	+				+0.1
2,322,363	+				+0.3
2,322,365	-				+0.6
2,322,371	-				-0.8
2,322,371	-				-0.6
2,322,371	-				-0.4
2,322,371	-				+1.0
2,322,371	-				-0.4
2,322,371	-				-0.1
2,322,371	-				-0.6
2,322,371	-				+0.7
2,322,371	-				+0.2
2,322,371	-				+1.3
2,322,371	-				-1.4
2,322,371	-				-0.0
2,322,371	-				+0.0
2,322,390	+				-0.3
2,322,407	-				-0.8
2,322,431	+				+0.7
2,322,437	-				+1.2
2,322,459	+				-0.1
2,322,464	+				+0.6
2,322,503	+		PGA1_c22370	0.15	+0.1
2,322,597	+		PGA1_c22370	0.43	+1.1
2,322,597	+		PGA1_c22370	0.43	+0.1
2,322,597	-		PGA1_c22370	0.43	+0.7
2,322,597	-		PGA1_c22370	0.43	+1.0
2,322,605	-		PGA1_c22370	0.46	-1.1
2,322,605	-		PGA1_c22370	0.46	+0.6
2,322,624	-		PGA1_c22370	0.51	+0.5
2,322,643	+		PGA1_c22370	0.57	+0.3
2,322,643	+		PGA1_c22370	0.57	+1.0
2,322,682	+		PGA1_c22370	0.68	+1.0
2,322,682	-		PGA1_c22370	0.68	+0.6
2,322,748	+		PGA1_c22370	0.88	+0.7
2,322,756	-				+0.0
2,322,758	-				+1.2
2,322,790	+				+0.5
2,322,797	+				-0.4
2,322,806	-				+0.5
2,322,815	+				-0.5
2,322,815	+				+0.0
2,322,815	-				-0.5
2,322,841	+				-0.1
2,322,841	+				+0.3
2,322,858	+				-0.1
2,322,859	-				+0.3
2,322,876	-				-0.1
2,322,932	+				-0.8
2,322,936	-				-0.2
2,322,942	+				+1.4
2,322,950	-				-0.2
2,322,995	+				-0.5
2,323,028	-				+0.9
2,323,107	+				+0.2
2,323,109	-				-1.3
2,323,115	-				-0.0
2,323,146	+				+1.3
2,323,146	+				-0.0
2,323,146	+				-0.3
2,323,146	+				-0.6
2,323,146	+				-0.1
2,323,151	+				-0.2
2,323,154	-				-0.2
2,323,154	-				+0.5
2,323,154	-				-1.1
2,323,156	+				-0.2
2,323,174	+				+1.1
2,323,219	-				-0.8
2,323,289	-		PGA1_c22380	0.22	-1.4
2,323,289	-		PGA1_c22380	0.22	-2.2
2,323,289	-		PGA1_c22380	0.22	-2.0
2,323,298	+		PGA1_c22380	0.24	+0.3
2,323,298	-		PGA1_c22380	0.24	-0.3
2,323,372	+		PGA1_c22380	0.41	+0.3
2,323,380	-		PGA1_c22380	0.42	+1.0
2,323,380	-		PGA1_c22380	0.42	-1.2