Strain Fitness in Marinobacter adhaerens HP15 around HP15_182

Experiment: m.b. copper (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_180 and HP15_181 are separated by 11 nucleotidesHP15_181 and HP15_182 are separated by 152 nucleotidesHP15_182 and HP15_183 overlap by 4 nucleotides HP15_180: HP15_180 - amino acid transporter, at 170,395 to 171,747 _180 HP15_181: HP15_181 - conserved hypothetical protein, at 171,759 to 172,112 _181 HP15_182: HP15_182 - copper resistance B precursor, at 172,265 to 173,014 _182 HP15_183: HP15_183 - copper-resistance protein, CopA family, at 173,011 to 174,771 _183 Position (kb) 172 173 174Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 171.381 kb on + strand, within HP15_180at 171.396 kb on + strand, within HP15_180at 171.481 kb on + strand, within HP15_180at 171.488 kb on + strand, within HP15_180at 171.489 kb on - strand, within HP15_180at 171.496 kb on - strand, within HP15_180at 171.519 kb on - strand, within HP15_180at 171.616 kb on + strandat 171.616 kb on + strandat 171.678 kb on + strandat 171.678 kb on + strandat 171.678 kb on + strandat 171.694 kb on - strandat 171.725 kb on - strandat 171.735 kb on + strandat 171.738 kb on - strandat 171.836 kb on + strand, within HP15_181at 171.895 kb on + strand, within HP15_181at 171.933 kb on - strand, within HP15_181at 171.996 kb on - strand, within HP15_181at 171.996 kb on - strand, within HP15_181at 172.026 kb on + strand, within HP15_181at 172.036 kb on + strand, within HP15_181at 172.114 kb on + strandat 172.114 kb on + strandat 172.333 kb on + strandat 172.351 kb on + strand, within HP15_182at 172.468 kb on - strand, within HP15_182at 172.480 kb on + strand, within HP15_182at 172.480 kb on + strand, within HP15_182at 172.488 kb on - strand, within HP15_182at 172.498 kb on - strand, within HP15_182at 172.628 kb on + strand, within HP15_182at 172.636 kb on - strand, within HP15_182at 172.638 kb on + strand, within HP15_182at 172.638 kb on + strand, within HP15_182at 172.666 kb on - strand, within HP15_182at 172.776 kb on + strand, within HP15_182at 172.888 kb on + strand, within HP15_182at 172.898 kb on - strand, within HP15_182at 173.053 kb on - strandat 173.053 kb on - strandat 173.053 kb on - strandat 173.053 kb on - strandat 173.055 kb on + strandat 173.086 kb on - strandat 173.142 kb on + strandat 173.150 kb on - strandat 173.243 kb on - strand, within HP15_183at 173.270 kb on - strand, within HP15_183at 173.272 kb on - strand, within HP15_183at 173.432 kb on + strand, within HP15_183at 173.455 kb on + strand, within HP15_183at 173.463 kb on - strand, within HP15_183at 173.465 kb on + strand, within HP15_183at 173.465 kb on + strand, within HP15_183at 173.473 kb on - strand, within HP15_183at 173.473 kb on - strand, within HP15_183at 173.503 kb on - strand, within HP15_183at 173.517 kb on - strand, within HP15_183at 173.535 kb on + strand, within HP15_183at 173.659 kb on + strand, within HP15_183at 173.664 kb on + strand, within HP15_183at 173.682 kb on - strand, within HP15_183at 173.682 kb on - strand, within HP15_183at 173.694 kb on + strand, within HP15_183at 173.713 kb on + strand, within HP15_183at 173.713 kb on + strand, within HP15_183at 173.718 kb on + strand, within HP15_183at 173.721 kb on - strand, within HP15_183at 173.774 kb on - strand, within HP15_183at 173.792 kb on + strand, within HP15_183at 173.792 kb on + strand, within HP15_183at 173.814 kb on + strand, within HP15_183at 173.817 kb on - strand, within HP15_183at 173.860 kb on + strand, within HP15_183at 173.869 kb on + strand, within HP15_183at 173.889 kb on + strand, within HP15_183at 173.961 kb on - strand, within HP15_183at 173.975 kb on - strand, within HP15_183at 174.007 kb on + strand, within HP15_183

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 1 mM
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171,381 + HP15_180 0.73 -0.0
171,396 + HP15_180 0.74 +0.5
171,481 + HP15_180 0.80 +0.0
171,488 + HP15_180 0.81 -0.4
171,489 - HP15_180 0.81 +0.3
171,496 - HP15_180 0.81 +0.0
171,519 - HP15_180 0.83 +0.4
171,616 + +0.1
171,616 + -0.3
171,678 + +0.1
171,678 + +0.8
171,678 + +0.1
171,694 - +0.1
171,725 - -0.3
171,735 + +0.1
171,738 - -0.3
171,836 + HP15_181 0.22 +0.5
171,895 + HP15_181 0.38 -0.3
171,933 - HP15_181 0.49 +0.1
171,996 - HP15_181 0.67 -0.7
171,996 - HP15_181 0.67 +0.1
172,026 + HP15_181 0.75 -0.0
172,036 + HP15_181 0.78 -0.2
172,114 + +0.2
172,114 + +0.3
172,333 + -1.0
172,351 + HP15_182 0.11 -1.0
172,468 - HP15_182 0.27 +0.0
172,480 + HP15_182 0.29 -0.5
172,480 + HP15_182 0.29 -0.6
172,488 - HP15_182 0.30 -0.7
172,498 - HP15_182 0.31 -0.3
172,628 + HP15_182 0.48 -0.5
172,636 - HP15_182 0.49 -0.5
172,638 + HP15_182 0.50 -1.2
172,638 + HP15_182 0.50 -1.0
172,666 - HP15_182 0.53 -0.9
172,776 + HP15_182 0.68 -0.9
172,888 + HP15_182 0.83 -1.1
172,898 - HP15_182 0.84 -0.3
173,053 - -1.4
173,053 - -0.1
173,053 - -1.5
173,053 - -1.7
173,055 + -0.1
173,086 - -1.5
173,142 + -1.9
173,150 - -3.1
173,243 - HP15_183 0.13 -3.0
173,270 - HP15_183 0.15 -1.3
173,272 - HP15_183 0.15 -3.0
173,432 + HP15_183 0.24 -1.9
173,455 + HP15_183 0.25 -2.9
173,463 - HP15_183 0.26 -3.1
173,465 + HP15_183 0.26 -2.3
173,465 + HP15_183 0.26 -2.4
173,473 - HP15_183 0.26 -3.1
173,473 - HP15_183 0.26 -1.1
173,503 - HP15_183 0.28 -3.9
173,517 - HP15_183 0.29 -3.4
173,535 + HP15_183 0.30 -2.4
173,659 + HP15_183 0.37 -3.1
173,664 + HP15_183 0.37 -2.4
173,682 - HP15_183 0.38 -2.4
173,682 - HP15_183 0.38 -3.3
173,694 + HP15_183 0.39 -2.5
173,713 + HP15_183 0.40 -2.5
173,713 + HP15_183 0.40 -2.4
173,718 + HP15_183 0.40 -2.5
173,721 - HP15_183 0.40 -4.4
173,774 - HP15_183 0.43 -2.9
173,792 + HP15_183 0.44 -1.8
173,792 + HP15_183 0.44 -3.1
173,814 + HP15_183 0.46 -3.1
173,817 - HP15_183 0.46 -2.3
173,860 + HP15_183 0.48 -3.1
173,869 + HP15_183 0.49 -2.4
173,889 + HP15_183 0.50 -2.5
173,961 - HP15_183 0.54 -2.4
173,975 - HP15_183 0.55 -2.4
174,007 + HP15_183 0.57 -2.0

Or see this region's nucleotide sequence