Strain Fitness in Shewanella amazonensis SB2B around Sama_1046

Experiment: Benzalkonium Chloride 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Benzalkonium Chloride 0.002 mg/ml
1,264,588	+		Sama_1045	0.76	-2.0
1,264,588	+		Sama_1045	0.76	+0.1
1,264,589	-		Sama_1045	0.76	+1.5
1,264,589	-		Sama_1045	0.76	+0.6
1,264,589	-		Sama_1045	0.76	+0.8
1,264,634	-		Sama_1045	0.77	-0.9
1,264,634	-		Sama_1045	0.77	-0.5
1,264,640	-		Sama_1045	0.78	-2.6
1,264,640	-		Sama_1045	0.78	-1.9
1,264,640	-		Sama_1045	0.78	-1.0
1,264,671	+		Sama_1045	0.79	-0.7
1,264,671	+		Sama_1045	0.79	-0.8
1,264,671	+		Sama_1045	0.79	-1.3
1,264,671	+		Sama_1045	0.79	-2.0
1,264,672	-		Sama_1045	0.79	-1.0
1,264,672	-		Sama_1045	0.79	+1.2
1,264,672	-		Sama_1045	0.79	+0.4
1,264,672	-		Sama_1045	0.79	+1.0
1,264,672	-		Sama_1045	0.79	-0.6
1,264,672	-		Sama_1045	0.79	+0.2
1,264,672	-		Sama_1045	0.79	+0.4
1,264,672	-		Sama_1045	0.79	-2.5
1,264,672	-		Sama_1045	0.79	-1.5
1,264,672	-		Sama_1045	0.79	-1.6
1,264,760	+		Sama_1045	0.82	+1.4
1,264,760	+		Sama_1045	0.82	-0.6
1,264,760	+		Sama_1045	0.82	-1.0
1,264,761	-		Sama_1045	0.82	+1.6
1,264,852	+		Sama_1045	0.86	+0.7
1,264,922	+		Sama_1045	0.89	-0.6
1,264,974	+				+0.5
1,264,975	-				-0.0
1,265,089	-				+0.1
1,265,089	-				-1.7
1,265,089	-				+1.0
1,265,089	-				-0.7
1,265,100	+				-0.6
1,265,101	-				+0.4
1,265,101	-				+0.4
1,265,101	-				-0.1
1,265,118	+				-0.9
1,265,131	+				-1.8
1,265,131	+				-1.8
1,265,160	+				+0.3
1,265,161	-				+1.0
1,265,161	-				-1.6
1,265,161	-				+0.4
1,265,179	+				-0.2
1,265,180	-				-1.6
1,265,259	+				-0.5
1,265,273	-				-0.5
1,265,295	-				+1.4
1,265,375	+				-0.5
1,265,375	+				-1.7
1,265,375	+				+1.0
1,265,376	-				-0.4
1,265,405	+				-0.8
1,265,407	+				-0.2
1,265,420	+				+1.6
1,265,420	+				+0.6
1,265,430	+				+0.1
1,265,430	+				-0.4
1,265,430	+				-2.9
1,265,430	+				+1.4
1,265,430	+				-1.6
1,265,430	+				+0.7
1,265,431	-				+0.5
1,265,431	-				-0.0
1,265,457	+				-0.7
1,265,519	+				-1.6
1,265,520	-				-2.2
1,265,718	-	recA	Sama_1046	0.20	-0.0
1,265,809	+	recA	Sama_1046	0.29	-2.0
1,265,809	+	recA	Sama_1046	0.29	-2.0
1,265,809	+	recA	Sama_1046	0.29	-0.8
1,265,809	+	recA	Sama_1046	0.29	+2.5
1,265,809	+	recA	Sama_1046	0.29	-0.6
1,265,809	+	recA	Sama_1046	0.29	-1.1
1,265,809	+	recA	Sama_1046	0.29	-0.9
1,265,810	-	recA	Sama_1046	0.29	-2.0
1,265,810	-	recA	Sama_1046	0.29	+0.4
1,265,810	-	recA	Sama_1046	0.29	-1.0
1,265,811	+	recA	Sama_1046	0.29	-0.0
1,265,811	+	recA	Sama_1046	0.29	-1.6
1,265,812	-	recA	Sama_1046	0.29	-0.3
1,265,812	-	recA	Sama_1046	0.29	-1.8
1,265,830	+	recA	Sama_1046	0.31	-0.0
1,265,830	+	recA	Sama_1046	0.31	-1.3
1,265,830	+	recA	Sama_1046	0.31	-1.3
1,265,831	-	recA	Sama_1046	0.31	-0.9
1,265,841	-	recA	Sama_1046	0.32	-0.8
1,265,995	+	recA	Sama_1046	0.46	-1.3
1,266,010	+	recA	Sama_1046	0.48	-1.3
1,266,032	+	recA	Sama_1046	0.50	-0.0
1,266,032	+	recA	Sama_1046	0.50	-2.2
1,266,032	+	recA	Sama_1046	0.50	-2.2
1,266,308	+	recA	Sama_1046	0.75	-0.1
1,266,340	+	recA	Sama_1046	0.78	-1.8
1,266,381	+	recA	Sama_1046	0.82	-1.0
1,266,381	+	recA	Sama_1046	0.82	+0.6
1,266,381	+	recA	Sama_1046	0.82	-0.6
1,266,381	+	recA	Sama_1046	0.82	-2.8
1,266,381	+	recA	Sama_1046	0.82	+0.3
1,266,381	+	recA	Sama_1046	0.82	-0.0
1,266,381	+	recA	Sama_1046	0.82	-2.5
1,266,381	+	recA	Sama_1046	0.82	-2.0
1,266,381	+	recA	Sama_1046	0.82	+1.4
1,266,381	+	recA	Sama_1046	0.82	-3.3
1,266,381	+	recA	Sama_1046	0.82	-0.9
1,266,381	+	recA	Sama_1046	0.82	-1.8
1,266,382	-	recA	Sama_1046	0.82	-1.3
1,266,382	-	recA	Sama_1046	0.82	-1.6
1,266,382	-	recA	Sama_1046	0.82	-1.6
1,266,383	+	recA	Sama_1046	0.82	-0.0
1,266,523	+				+1.2
1,266,523	+				-3.2
1,266,523	+				-2.2
1,266,523	+				-0.2
1,266,640	+		Sama_1047	0.13	-0.8
1,266,640	+		Sama_1047	0.13	-0.2
1,266,640	+		Sama_1047	0.13	+0.2
1,266,641	-		Sama_1047	0.14	-2.2
1,266,703	+		Sama_1047	0.28	-2.0
1,266,704	-		Sama_1047	0.28	+0.7
1,266,704	-		Sama_1047	0.28	-0.6
1,266,704	-		Sama_1047	0.28	+0.6
1,266,704	-		Sama_1047	0.28	-0.2
1,266,710	+		Sama_1047	0.29	-0.0
1,266,798	+		Sama_1047	0.50	+0.2
1,266,799	-		Sama_1047	0.50	-2.2
1,266,814	+		Sama_1047	0.53	-0.2
1,266,823	+		Sama_1047	0.55	+0.6
1,266,823	+		Sama_1047	0.55	-0.2
1,266,824	-		Sama_1047	0.55	-0.1
1,266,860	+		Sama_1047	0.64	-0.3
1,266,860	+		Sama_1047	0.64	-0.7
1,266,861	-		Sama_1047	0.64	+0.4
1,266,861	-		Sama_1047	0.64	+1.8
1,266,937	+		Sama_1047	0.81	-0.7
1,266,937	+		Sama_1047	0.81	+1.6
1,266,938	-		Sama_1047	0.82	+2.4
1,266,938	-		Sama_1047	0.82	+0.9
1,266,938	-		Sama_1047	0.82	-1.5
1,266,938	-		Sama_1047	0.82	+1.5
1,266,939	+		Sama_1047	0.82	-0.6
1,266,939	+		Sama_1047	0.82	+0.6
1,266,939	+		Sama_1047	0.82	-0.9
1,266,939	+		Sama_1047	0.82	+1.3
1,266,940	-		Sama_1047	0.82	-0.9
1,266,944	+		Sama_1047	0.83	+3.1
1,266,945	-		Sama_1047	0.83	+2.0
1,266,945	-		Sama_1047	0.83	-0.0
1,267,004	+				+0.6
1,267,045	+				-2.0