Strain Fitness in Shewanella amazonensis SB2B around Sama_0721

Experiment: Benzalkonium Chloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0719 and Sama_0720 are separated by 40 nucleotidesSama_0720 and Sama_0721 are separated by 120 nucleotidesSama_0721 and Sama_0722 are separated by 167 nucleotides Sama_0719: Sama_0719 - hypothetical protein (RefSeq), at 884,021 to 884,701 _0719 Sama_0720: Sama_0720 - hypothetical protein (RefSeq), at 884,742 to 885,197 _0720 Sama_0721: Sama_0721 - integral membrane protein CcmA involved in cell shape determination-like protein (RefSeq), at 885,318 to 886,166 _0721 Sama_0722: Sama_0722 - hypothetical protein (RefSeq), at 886,334 to 887,218 _0722 Position (kb) 885 886 887Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 884.406 kb on + strand, within Sama_0719at 884.406 kb on + strand, within Sama_0719at 884.406 kb on + strand, within Sama_0719at 884.406 kb on + strand, within Sama_0719at 884.406 kb on + strand, within Sama_0719at 884.406 kb on + strand, within Sama_0719at 884.407 kb on - strand, within Sama_0719at 884.407 kb on - strand, within Sama_0719at 884.407 kb on - strand, within Sama_0719at 884.407 kb on - strand, within Sama_0719at 884.407 kb on - strand, within Sama_0719at 884.407 kb on - strand, within Sama_0719at 884.407 kb on - strand, within Sama_0719at 884.407 kb on - strand, within Sama_0719at 884.407 kb on - strand, within Sama_0719at 884.508 kb on + strand, within Sama_0719at 884.508 kb on + strand, within Sama_0719at 884.508 kb on + strand, within Sama_0719at 884.509 kb on - strand, within Sama_0719at 884.620 kb on - strand, within Sama_0719at 884.657 kb on - strandat 884.662 kb on + strandat 884.662 kb on + strandat 884.663 kb on - strandat 884.663 kb on - strandat 884.663 kb on - strandat 884.685 kb on + strandat 884.842 kb on + strand, within Sama_0720at 884.843 kb on - strand, within Sama_0720at 884.843 kb on - strand, within Sama_0720at 884.843 kb on - strand, within Sama_0720at 884.852 kb on + strand, within Sama_0720at 884.852 kb on + strand, within Sama_0720at 884.861 kb on + strand, within Sama_0720at 884.861 kb on + strand, within Sama_0720at 884.870 kb on + strand, within Sama_0720at 884.870 kb on + strand, within Sama_0720at 884.871 kb on - strand, within Sama_0720at 884.947 kb on + strand, within Sama_0720at 884.947 kb on + strand, within Sama_0720at 884.947 kb on + strand, within Sama_0720at 884.947 kb on + strand, within Sama_0720at 884.948 kb on - strand, within Sama_0720at 884.948 kb on - strand, within Sama_0720at 884.948 kb on - strand, within Sama_0720at 884.948 kb on - strand, within Sama_0720at 884.948 kb on - strand, within Sama_0720at 884.948 kb on - strand, within Sama_0720at 884.948 kb on - strand, within Sama_0720at 884.981 kb on - strand, within Sama_0720at 884.981 kb on - strand, within Sama_0720at 884.991 kb on + strand, within Sama_0720at 884.991 kb on + strand, within Sama_0720at 884.991 kb on + strand, within Sama_0720at 884.991 kb on + strand, within Sama_0720at 884.992 kb on - strand, within Sama_0720at 884.992 kb on - strand, within Sama_0720at 884.992 kb on - strand, within Sama_0720at 884.992 kb on - strand, within Sama_0720at 884.993 kb on + strand, within Sama_0720at 884.994 kb on - strand, within Sama_0720at 885.001 kb on + strand, within Sama_0720at 885.001 kb on + strand, within Sama_0720at 885.002 kb on - strand, within Sama_0720at 885.026 kb on + strand, within Sama_0720at 885.027 kb on - strand, within Sama_0720at 885.068 kb on + strand, within Sama_0720at 885.068 kb on + strand, within Sama_0720at 885.068 kb on + strand, within Sama_0720at 885.068 kb on + strand, within Sama_0720at 885.068 kb on + strand, within Sama_0720at 885.069 kb on - strand, within Sama_0720at 885.069 kb on - strand, within Sama_0720at 885.073 kb on - strand, within Sama_0720at 885.073 kb on - strand, within Sama_0720at 885.115 kb on + strand, within Sama_0720at 885.195 kb on + strandat 885.195 kb on + strandat 885.195 kb on + strandat 885.196 kb on - strandat 885.196 kb on - strandat 885.196 kb on - strandat 885.226 kb on + strandat 885.227 kb on - strandat 885.344 kb on + strandat 885.344 kb on + strandat 885.345 kb on - strandat 885.345 kb on - strandat 885.345 kb on - strandat 885.442 kb on + strand, within Sama_0721at 885.442 kb on + strand, within Sama_0721at 885.442 kb on + strand, within Sama_0721at 885.443 kb on - strand, within Sama_0721at 885.443 kb on - strand, within Sama_0721at 885.443 kb on - strand, within Sama_0721at 885.443 kb on - strand, within Sama_0721at 885.448 kb on + strand, within Sama_0721at 885.464 kb on + strand, within Sama_0721at 885.518 kb on + strand, within Sama_0721at 885.581 kb on + strand, within Sama_0721at 885.703 kb on + strand, within Sama_0721at 885.703 kb on + strand, within Sama_0721at 885.703 kb on + strand, within Sama_0721at 885.703 kb on + strand, within Sama_0721at 885.703 kb on + strand, within Sama_0721at 885.704 kb on - strand, within Sama_0721at 885.704 kb on - strand, within Sama_0721at 885.704 kb on - strand, within Sama_0721at 885.704 kb on - strand, within Sama_0721at 885.704 kb on - strand, within Sama_0721at 885.779 kb on + strand, within Sama_0721at 885.789 kb on + strand, within Sama_0721at 885.939 kb on + strand, within Sama_0721at 885.939 kb on + strand, within Sama_0721at 885.940 kb on - strand, within Sama_0721at 886.116 kb on - strandat 886.116 kb on - strandat 886.116 kb on - strandat 886.118 kb on + strandat 886.119 kb on - strandat 886.164 kb on + strandat 886.165 kb on - strandat 886.335 kb on + strandat 886.336 kb on - strandat 886.381 kb on + strandat 886.381 kb on + strandat 886.381 kb on + strandat 886.381 kb on + strandat 886.381 kb on + strandat 886.382 kb on - strandat 886.382 kb on - strandat 886.640 kb on - strand, within Sama_0722at 886.640 kb on - strand, within Sama_0722at 886.775 kb on + strand, within Sama_0722at 886.776 kb on - strand, within Sama_0722at 886.830 kb on - strand, within Sama_0722at 886.858 kb on + strand, within Sama_0722at 886.859 kb on - strand, within Sama_0722at 886.887 kb on + strand, within Sama_0722at 886.888 kb on - strand, within Sama_0722at 886.910 kb on + strand, within Sama_0722at 886.910 kb on + strand, within Sama_0722at 886.911 kb on - strand, within Sama_0722at 886.918 kb on - strand, within Sama_0722at 886.943 kb on + strand, within Sama_0722at 886.944 kb on - strand, within Sama_0722at 886.978 kb on + strand, within Sama_0722at 886.978 kb on + strand, within Sama_0722at 886.978 kb on + strand, within Sama_0722at 886.979 kb on - strand, within Sama_0722at 886.979 kb on - strand, within Sama_0722at 886.991 kb on + strand, within Sama_0722at 886.991 kb on + strand, within Sama_0722at 886.991 kb on + strand, within Sama_0722at 886.992 kb on - strand, within Sama_0722at 886.992 kb on - strand, within Sama_0722at 886.992 kb on - strand, within Sama_0722at 886.992 kb on - strand, within Sama_0722at 886.992 kb on - strand, within Sama_0722at 886.992 kb on - strand, within Sama_0722at 886.992 kb on - strand, within Sama_0722at 886.992 kb on - strand, within Sama_0722at 886.992 kb on - strand, within Sama_0722at 886.992 kb on - strand, within Sama_0722at 886.992 kb on - strand, within Sama_0722at 886.992 kb on - strand, within Sama_0722at 887.063 kb on + strand, within Sama_0722at 887.063 kb on + strand, within Sama_0722at 887.063 kb on + strand, within Sama_0722at 887.063 kb on + strand, within Sama_0722at 887.063 kb on + strand, within Sama_0722at 887.064 kb on - strand, within Sama_0722at 887.074 kb on + strand, within Sama_0722at 887.106 kb on - strand, within Sama_0722at 887.110 kb on + strand, within Sama_0722at 887.110 kb on + strand, within Sama_0722at 887.110 kb on + strand, within Sama_0722at 887.110 kb on + strand, within Sama_0722at 887.110 kb on + strand, within Sama_0722at 887.110 kb on + strand, within Sama_0722at 887.111 kb on - strand, within Sama_0722at 887.111 kb on - strand, within Sama_0722at 887.111 kb on - strand, within Sama_0722at 887.111 kb on - strand, within Sama_0722at 887.111 kb on - strand, within Sama_0722at 887.111 kb on - strand, within Sama_0722

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.002 mg/ml
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884,406 + Sama_0719 0.57 -0.7
884,406 + Sama_0719 0.57 +0.1
884,406 + Sama_0719 0.57 -1.9
884,406 + Sama_0719 0.57 -0.1
884,406 + Sama_0719 0.57 -1.2
884,406 + Sama_0719 0.57 -0.5
884,407 - Sama_0719 0.57 +1.4
884,407 - Sama_0719 0.57 -0.4
884,407 - Sama_0719 0.57 -0.1
884,407 - Sama_0719 0.57 +0.5
884,407 - Sama_0719 0.57 +0.4
884,407 - Sama_0719 0.57 +0.1
884,407 - Sama_0719 0.57 +1.1
884,407 - Sama_0719 0.57 -0.9
884,407 - Sama_0719 0.57 -0.5
884,508 + Sama_0719 0.72 -0.5
884,508 + Sama_0719 0.72 -1.8
884,508 + Sama_0719 0.72 +1.8
884,509 - Sama_0719 0.72 -1.9
884,620 - Sama_0719 0.88 +0.7
884,657 - -0.1
884,662 + -2.8
884,662 + +0.7
884,663 - -0.4
884,663 - +0.4
884,663 - -0.5
884,685 + -2.4
884,842 + Sama_0720 0.22 -1.0
884,843 - Sama_0720 0.22 -1.7
884,843 - Sama_0720 0.22 +1.1
884,843 - Sama_0720 0.22 +1.4
884,852 + Sama_0720 0.24 -0.5
884,852 + Sama_0720 0.24 -0.6
884,861 + Sama_0720 0.26 -0.4
884,861 + Sama_0720 0.26 -0.1
884,870 + Sama_0720 0.28 -2.0
884,870 + Sama_0720 0.28 -0.1
884,871 - Sama_0720 0.28 -1.2
884,947 + Sama_0720 0.45 -0.9
884,947 + Sama_0720 0.45 +0.1
884,947 + Sama_0720 0.45 -2.6
884,947 + Sama_0720 0.45 +0.1
884,948 - Sama_0720 0.45 -0.6
884,948 - Sama_0720 0.45 -2.6
884,948 - Sama_0720 0.45 -1.3
884,948 - Sama_0720 0.45 -2.6
884,948 - Sama_0720 0.45 -2.0
884,948 - Sama_0720 0.45 -0.5
884,948 - Sama_0720 0.45 +1.0
884,981 - Sama_0720 0.52 -0.5
884,981 - Sama_0720 0.52 +1.0
884,991 + Sama_0720 0.55 +0.1
884,991 + Sama_0720 0.55 -0.7
884,991 + Sama_0720 0.55 +1.1
884,991 + Sama_0720 0.55 -1.7
884,992 - Sama_0720 0.55 +1.1
884,992 - Sama_0720 0.55 +0.3
884,992 - Sama_0720 0.55 -1.1
884,992 - Sama_0720 0.55 -0.3
884,993 + Sama_0720 0.55 -2.2
884,994 - Sama_0720 0.55 +0.5
885,001 + Sama_0720 0.57 -0.5
885,001 + Sama_0720 0.57 -0.3
885,002 - Sama_0720 0.57 -0.6
885,026 + Sama_0720 0.62 -0.2
885,027 - Sama_0720 0.62 -0.5
885,068 + Sama_0720 0.71 -0.5
885,068 + Sama_0720 0.71 -0.2
885,068 + Sama_0720 0.71 +1.1
885,068 + Sama_0720 0.71 -2.0
885,068 + Sama_0720 0.71 -0.6
885,069 - Sama_0720 0.72 -1.2
885,069 - Sama_0720 0.72 -1.2
885,073 - Sama_0720 0.73 -2.5
885,073 - Sama_0720 0.73 +0.5
885,115 + Sama_0720 0.82 -2.0
885,195 + -2.6
885,195 + -0.2
885,195 + +1.7
885,196 - -2.5
885,196 - +1.3
885,196 - -1.1
885,226 + +0.3
885,227 - -0.9
885,344 + +2.9
885,344 + +0.7
885,345 - -1.7
885,345 - +1.1
885,345 - -0.4
885,442 + Sama_0721 0.15 -0.6
885,442 + Sama_0721 0.15 +1.6
885,442 + Sama_0721 0.15 +0.5
885,443 - Sama_0721 0.15 +0.4
885,443 - Sama_0721 0.15 +0.1
885,443 - Sama_0721 0.15 -1.2
885,443 - Sama_0721 0.15 +0.7
885,448 + Sama_0721 0.15 -0.7
885,464 + Sama_0721 0.17 -0.3
885,518 + Sama_0721 0.24 +1.5
885,581 + Sama_0721 0.31 -0.2
885,703 + Sama_0721 0.45 -0.9
885,703 + Sama_0721 0.45 -1.5
885,703 + Sama_0721 0.45 +0.0
885,703 + Sama_0721 0.45 +0.5
885,703 + Sama_0721 0.45 +3.5
885,704 - Sama_0721 0.45 -1.7
885,704 - Sama_0721 0.45 +0.5
885,704 - Sama_0721 0.45 +0.1
885,704 - Sama_0721 0.45 +0.5
885,704 - Sama_0721 0.45 +0.3
885,779 + Sama_0721 0.54 -3.3
885,789 + Sama_0721 0.55 -2.0
885,939 + Sama_0721 0.73 +0.1
885,939 + Sama_0721 0.73 -0.7
885,940 - Sama_0721 0.73 -1.7
886,116 - +0.8
886,116 - -0.5
886,116 - -0.2
886,118 + +0.1
886,119 - -0.5
886,164 + -0.2
886,165 - -0.1
886,335 + -0.9
886,336 - +1.2
886,381 + +2.2
886,381 + -0.2
886,381 + -0.2
886,381 + +0.1
886,381 + -0.3
886,382 - +0.2
886,382 - +1.1
886,640 - Sama_0722 0.35 -1.5
886,640 - Sama_0722 0.35 +1.1
886,775 + Sama_0722 0.50 +0.5
886,776 - Sama_0722 0.50 -1.9
886,830 - Sama_0722 0.56 +0.5
886,858 + Sama_0722 0.59 +0.7
886,859 - Sama_0722 0.59 +0.2
886,887 + Sama_0722 0.62 -0.2
886,888 - Sama_0722 0.63 +1.1
886,910 + Sama_0722 0.65 -0.4
886,910 + Sama_0722 0.65 -0.3
886,911 - Sama_0722 0.65 +0.3
886,918 - Sama_0722 0.66 -1.1
886,943 + Sama_0722 0.69 +0.7
886,944 - Sama_0722 0.69 -0.2
886,978 + Sama_0722 0.73 +0.4
886,978 + Sama_0722 0.73 +0.6
886,978 + Sama_0722 0.73 -1.0
886,979 - Sama_0722 0.73 -0.2
886,979 - Sama_0722 0.73 +0.2
886,991 + Sama_0722 0.74 -0.4
886,991 + Sama_0722 0.74 -1.2
886,991 + Sama_0722 0.74 -1.5
886,992 - Sama_0722 0.74 +0.6
886,992 - Sama_0722 0.74 +1.1
886,992 - Sama_0722 0.74 +0.3
886,992 - Sama_0722 0.74 +1.0
886,992 - Sama_0722 0.74 -0.2
886,992 - Sama_0722 0.74 -1.0
886,992 - Sama_0722 0.74 -1.7
886,992 - Sama_0722 0.74 +0.5
886,992 - Sama_0722 0.74 +2.1
886,992 - Sama_0722 0.74 -1.9
886,992 - Sama_0722 0.74 -0.4
886,992 - Sama_0722 0.74 -0.2
887,063 + Sama_0722 0.82 +1.5
887,063 + Sama_0722 0.82 +1.5
887,063 + Sama_0722 0.82 +1.1
887,063 + Sama_0722 0.82 +1.1
887,063 + Sama_0722 0.82 -2.6
887,064 - Sama_0722 0.82 +0.7
887,074 + Sama_0722 0.84 -0.9
887,106 - Sama_0722 0.87 -3.0
887,110 + Sama_0722 0.88 +1.1
887,110 + Sama_0722 0.88 -0.0
887,110 + Sama_0722 0.88 +0.0
887,110 + Sama_0722 0.88 -0.1
887,110 + Sama_0722 0.88 -2.0
887,110 + Sama_0722 0.88 -0.6
887,111 - Sama_0722 0.88 -0.9
887,111 - Sama_0722 0.88 -0.7
887,111 - Sama_0722 0.88 -0.4
887,111 - Sama_0722 0.88 -2.0
887,111 - Sama_0722 0.88 -2.0
887,111 - Sama_0722 0.88 -0.2

Or see this region's nucleotide sequence