Strain Fitness in Shewanella amazonensis SB2B around Sama_0239

Experiment: Benzalkonium Chloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0238 and rplQ are separated by 39 nucleotidesrplQ and Sama_0240 are separated by 55 nucleotides Sama_0238: Sama_0238 - DNA-directed RNA polymerase subunit alpha (RefSeq), at 264,078 to 265,067 _0238 Sama_0239: rplQ - 50S ribosomal protein L17 (RefSeq), at 265,107 to 265,502 rplQ Sama_0240: Sama_0240 - hypothetical protein (RefSeq), at 265,558 to 266,529 _0240 Position (kb) 265 266Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 265.560 kb on - strandat 265.560 kb on - strandat 265.560 kb on - strandat 265.668 kb on - strand, within Sama_0240at 265.668 kb on - strand, within Sama_0240at 265.671 kb on + strand, within Sama_0240at 265.671 kb on + strand, within Sama_0240at 265.672 kb on - strand, within Sama_0240at 265.693 kb on + strand, within Sama_0240at 265.694 kb on - strand, within Sama_0240at 265.694 kb on - strand, within Sama_0240at 265.694 kb on - strand, within Sama_0240at 265.694 kb on - strand, within Sama_0240at 265.696 kb on - strand, within Sama_0240at 265.698 kb on + strand, within Sama_0240at 265.698 kb on + strand, within Sama_0240at 265.698 kb on + strand, within Sama_0240at 265.698 kb on + strand, within Sama_0240at 265.699 kb on - strand, within Sama_0240at 265.699 kb on - strand, within Sama_0240at 265.699 kb on - strand, within Sama_0240at 265.736 kb on + strand, within Sama_0240at 265.751 kb on + strand, within Sama_0240at 265.751 kb on + strand, within Sama_0240at 265.751 kb on + strand, within Sama_0240at 265.752 kb on - strand, within Sama_0240at 265.752 kb on - strand, within Sama_0240at 265.752 kb on - strand, within Sama_0240at 265.759 kb on + strand, within Sama_0240at 265.759 kb on + strand, within Sama_0240at 265.759 kb on + strand, within Sama_0240at 265.759 kb on + strand, within Sama_0240at 265.759 kb on + strand, within Sama_0240at 265.759 kb on + strand, within Sama_0240at 265.759 kb on + strand, within Sama_0240at 265.759 kb on + strand, within Sama_0240at 265.759 kb on + strand, within Sama_0240at 265.759 kb on + strand, within Sama_0240at 265.760 kb on - strand, within Sama_0240at 265.760 kb on - strand, within Sama_0240at 265.760 kb on - strand, within Sama_0240at 265.760 kb on - strand, within Sama_0240at 265.760 kb on - strand, within Sama_0240at 265.760 kb on - strand, within Sama_0240at 265.760 kb on - strand, within Sama_0240at 265.760 kb on - strand, within Sama_0240at 265.760 kb on - strand, within Sama_0240at 265.760 kb on - strand, within Sama_0240at 265.760 kb on - strand, within Sama_0240at 265.760 kb on - strand, within Sama_0240at 265.760 kb on - strand, within Sama_0240at 265.760 kb on - strand, within Sama_0240at 265.765 kb on - strand, within Sama_0240at 265.815 kb on + strand, within Sama_0240at 265.815 kb on + strand, within Sama_0240at 265.815 kb on + strand, within Sama_0240at 265.815 kb on + strand, within Sama_0240at 265.815 kb on + strand, within Sama_0240at 265.815 kb on + strand, within Sama_0240at 265.815 kb on + strand, within Sama_0240at 265.815 kb on + strand, within Sama_0240at 265.816 kb on - strand, within Sama_0240at 265.816 kb on - strand, within Sama_0240at 265.816 kb on - strand, within Sama_0240at 265.816 kb on - strand, within Sama_0240at 265.816 kb on - strand, within Sama_0240at 265.816 kb on - strand, within Sama_0240at 265.816 kb on - strand, within Sama_0240at 265.816 kb on - strand, within Sama_0240at 265.816 kb on - strand, within Sama_0240at 265.816 kb on - strand, within Sama_0240at 265.816 kb on - strand, within Sama_0240at 265.823 kb on + strand, within Sama_0240at 265.823 kb on + strand, within Sama_0240at 265.824 kb on - strand, within Sama_0240at 265.824 kb on - strand, within Sama_0240at 265.833 kb on + strand, within Sama_0240at 265.833 kb on + strand, within Sama_0240at 265.833 kb on + strand, within Sama_0240at 265.833 kb on + strand, within Sama_0240at 265.834 kb on - strand, within Sama_0240at 265.834 kb on - strand, within Sama_0240at 265.834 kb on - strand, within Sama_0240at 265.854 kb on + strand, within Sama_0240at 265.854 kb on + strand, within Sama_0240at 265.855 kb on - strand, within Sama_0240at 265.855 kb on - strand, within Sama_0240at 265.855 kb on - strand, within Sama_0240at 265.856 kb on + strand, within Sama_0240at 265.856 kb on + strand, within Sama_0240at 265.856 kb on + strand, within Sama_0240at 265.856 kb on + strand, within Sama_0240at 265.856 kb on + strand, within Sama_0240at 265.856 kb on + strand, within Sama_0240at 265.857 kb on - strand, within Sama_0240at 265.857 kb on - strand, within Sama_0240at 265.857 kb on - strand, within Sama_0240at 265.857 kb on - strand, within Sama_0240at 265.857 kb on - strand, within Sama_0240at 265.857 kb on - strand, within Sama_0240at 265.882 kb on - strand, within Sama_0240at 265.882 kb on - strand, within Sama_0240at 265.886 kb on + strand, within Sama_0240at 265.887 kb on - strand, within Sama_0240at 265.910 kb on + strand, within Sama_0240at 265.911 kb on - strand, within Sama_0240at 265.972 kb on + strand, within Sama_0240at 265.972 kb on + strand, within Sama_0240at 265.973 kb on - strand, within Sama_0240at 265.973 kb on - strand, within Sama_0240at 265.973 kb on - strand, within Sama_0240at 265.973 kb on - strand, within Sama_0240at 265.986 kb on + strand, within Sama_0240at 265.986 kb on + strand, within Sama_0240at 265.986 kb on + strand, within Sama_0240at 265.987 kb on - strand, within Sama_0240at 265.987 kb on - strand, within Sama_0240at 265.999 kb on + strand, within Sama_0240at 266.000 kb on - strand, within Sama_0240at 266.000 kb on - strand, within Sama_0240at 266.000 kb on - strand, within Sama_0240at 266.000 kb on - strand, within Sama_0240at 266.000 kb on - strand, within Sama_0240at 266.000 kb on - strand, within Sama_0240at 266.003 kb on + strand, within Sama_0240at 266.003 kb on + strand, within Sama_0240at 266.003 kb on + strand, within Sama_0240at 266.003 kb on + strand, within Sama_0240at 266.003 kb on + strand, within Sama_0240at 266.004 kb on - strand, within Sama_0240at 266.004 kb on - strand, within Sama_0240at 266.004 kb on - strand, within Sama_0240at 266.004 kb on - strand, within Sama_0240at 266.004 kb on - strand, within Sama_0240at 266.004 kb on - strand, within Sama_0240at 266.004 kb on - strand, within Sama_0240at 266.047 kb on - strand, within Sama_0240at 266.047 kb on - strand, within Sama_0240at 266.062 kb on + strand, within Sama_0240at 266.062 kb on + strand, within Sama_0240at 266.063 kb on - strand, within Sama_0240at 266.063 kb on - strand, within Sama_0240at 266.063 kb on - strand, within Sama_0240at 266.072 kb on - strand, within Sama_0240at 266.106 kb on + strand, within Sama_0240at 266.106 kb on + strand, within Sama_0240at 266.113 kb on + strand, within Sama_0240at 266.191 kb on - strand, within Sama_0240at 266.191 kb on - strand, within Sama_0240at 266.197 kb on - strand, within Sama_0240at 266.197 kb on - strand, within Sama_0240at 266.209 kb on + strand, within Sama_0240at 266.209 kb on + strand, within Sama_0240at 266.209 kb on + strand, within Sama_0240at 266.209 kb on + strand, within Sama_0240at 266.210 kb on - strand, within Sama_0240at 266.210 kb on - strand, within Sama_0240at 266.223 kb on + strand, within Sama_0240at 266.224 kb on - strand, within Sama_0240at 266.224 kb on - strand, within Sama_0240at 266.245 kb on + strand, within Sama_0240at 266.262 kb on + strand, within Sama_0240at 266.278 kb on + strand, within Sama_0240at 266.295 kb on - strand, within Sama_0240at 266.295 kb on - strand, within Sama_0240at 266.295 kb on - strand, within Sama_0240at 266.336 kb on + strand, within Sama_0240at 266.336 kb on + strand, within Sama_0240at 266.336 kb on + strand, within Sama_0240at 266.336 kb on + strand, within Sama_0240at 266.337 kb on - strand, within Sama_0240at 266.410 kb on - strand, within Sama_0240at 266.420 kb on + strand, within Sama_0240at 266.420 kb on + strand, within Sama_0240at 266.420 kb on + strand, within Sama_0240at 266.420 kb on + strand, within Sama_0240at 266.420 kb on + strand, within Sama_0240at 266.421 kb on - strand, within Sama_0240at 266.438 kb on + strandat 266.450 kb on + strandat 266.458 kb on + strandat 266.458 kb on + strandat 266.458 kb on + strandat 266.458 kb on + strandat 266.459 kb on - strandat 266.459 kb on - strandat 266.459 kb on - strandat 266.459 kb on - strandat 266.459 kb on - strandat 266.459 kb on - strandat 266.459 kb on - strandat 266.459 kb on - strandat 266.460 kb on + strandat 266.461 kb on - strandat 266.461 kb on - strandat 266.461 kb on - strandat 266.463 kb on + strandat 266.463 kb on + strandat 266.463 kb on + strandat 266.463 kb on + strandat 266.463 kb on + strandat 266.463 kb on + strandat 266.463 kb on + strandat 266.463 kb on + strandat 266.464 kb on - strandat 266.464 kb on - strandat 266.464 kb on - strandat 266.464 kb on - strandat 266.464 kb on - strandat 266.464 kb on - strandat 266.464 kb on - strandat 266.467 kb on + strandat 266.467 kb on + strandat 266.467 kb on + strandat 266.468 kb on - strandat 266.468 kb on - strandat 266.494 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.002 mg/ml
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265,560 - -0.1
265,560 - -0.8
265,560 - +0.1
265,668 - Sama_0240 0.11 +0.4
265,668 - Sama_0240 0.11 +0.8
265,671 + Sama_0240 0.12 -0.2
265,671 + Sama_0240 0.12 -1.6
265,672 - Sama_0240 0.12 +2.7
265,693 + Sama_0240 0.14 -0.5
265,694 - Sama_0240 0.14 +1.9
265,694 - Sama_0240 0.14 -1.1
265,694 - Sama_0240 0.14 +0.7
265,694 - Sama_0240 0.14 +1.5
265,696 - Sama_0240 0.14 -0.8
265,698 + Sama_0240 0.14 +0.0
265,698 + Sama_0240 0.14 +0.5
265,698 + Sama_0240 0.14 -2.4
265,698 + Sama_0240 0.14 +2.2
265,699 - Sama_0240 0.15 -0.3
265,699 - Sama_0240 0.15 +2.1
265,699 - Sama_0240 0.15 -1.5
265,736 + Sama_0240 0.18 -0.4
265,751 + Sama_0240 0.20 +1.6
265,751 + Sama_0240 0.20 -0.4
265,751 + Sama_0240 0.20 +0.5
265,752 - Sama_0240 0.20 -0.6
265,752 - Sama_0240 0.20 +2.0
265,752 - Sama_0240 0.20 -1.2
265,759 + Sama_0240 0.21 -0.0
265,759 + Sama_0240 0.21 +0.6
265,759 + Sama_0240 0.21 -0.2
265,759 + Sama_0240 0.21 -1.6
265,759 + Sama_0240 0.21 -1.0
265,759 + Sama_0240 0.21 +0.8
265,759 + Sama_0240 0.21 -2.1
265,759 + Sama_0240 0.21 -3.0
265,759 + Sama_0240 0.21 +0.8
265,759 + Sama_0240 0.21 +0.5
265,760 - Sama_0240 0.21 -0.5
265,760 - Sama_0240 0.21 +0.4
265,760 - Sama_0240 0.21 -0.0
265,760 - Sama_0240 0.21 +0.7
265,760 - Sama_0240 0.21 +0.5
265,760 - Sama_0240 0.21 +0.6
265,760 - Sama_0240 0.21 +0.1
265,760 - Sama_0240 0.21 -1.6
265,760 - Sama_0240 0.21 +0.9
265,760 - Sama_0240 0.21 +1.6
265,760 - Sama_0240 0.21 -0.2
265,760 - Sama_0240 0.21 -0.6
265,760 - Sama_0240 0.21 -0.2
265,760 - Sama_0240 0.21 -2.1
265,765 - Sama_0240 0.21 +0.1
265,815 + Sama_0240 0.26 -0.2
265,815 + Sama_0240 0.26 +0.0
265,815 + Sama_0240 0.26 +0.5
265,815 + Sama_0240 0.26 -2.0
265,815 + Sama_0240 0.26 -1.0
265,815 + Sama_0240 0.26 +1.4
265,815 + Sama_0240 0.26 +0.0
265,815 + Sama_0240 0.26 -1.8
265,816 - Sama_0240 0.27 +0.5
265,816 - Sama_0240 0.27 -0.5
265,816 - Sama_0240 0.27 +1.6
265,816 - Sama_0240 0.27 +0.7
265,816 - Sama_0240 0.27 +0.1
265,816 - Sama_0240 0.27 -0.3
265,816 - Sama_0240 0.27 -0.9
265,816 - Sama_0240 0.27 -0.1
265,816 - Sama_0240 0.27 -0.8
265,816 - Sama_0240 0.27 +0.5
265,816 - Sama_0240 0.27 -1.1
265,823 + Sama_0240 0.27 +0.4
265,823 + Sama_0240 0.27 +0.9
265,824 - Sama_0240 0.27 -3.0
265,824 - Sama_0240 0.27 -0.1
265,833 + Sama_0240 0.28 +0.0
265,833 + Sama_0240 0.28 +0.8
265,833 + Sama_0240 0.28 -2.0
265,833 + Sama_0240 0.28 +0.5
265,834 - Sama_0240 0.28 -2.0
265,834 - Sama_0240 0.28 -1.1
265,834 - Sama_0240 0.28 +1.4
265,854 + Sama_0240 0.30 +1.1
265,854 + Sama_0240 0.30 -1.6
265,855 - Sama_0240 0.31 +2.2
265,855 - Sama_0240 0.31 -1.5
265,855 - Sama_0240 0.31 -0.2
265,856 + Sama_0240 0.31 -0.2
265,856 + Sama_0240 0.31 +0.8
265,856 + Sama_0240 0.31 +0.8
265,856 + Sama_0240 0.31 -0.2
265,856 + Sama_0240 0.31 +0.5
265,856 + Sama_0240 0.31 -0.6
265,857 - Sama_0240 0.31 -2.0
265,857 - Sama_0240 0.31 +1.2
265,857 - Sama_0240 0.31 +0.4
265,857 - Sama_0240 0.31 +1.4
265,857 - Sama_0240 0.31 -1.5
265,857 - Sama_0240 0.31 +0.8
265,882 - Sama_0240 0.33 +0.6
265,882 - Sama_0240 0.33 -0.2
265,886 + Sama_0240 0.34 +0.6
265,887 - Sama_0240 0.34 +1.3
265,910 + Sama_0240 0.36 +0.8
265,911 - Sama_0240 0.36 -2.3
265,972 + Sama_0240 0.43 -1.8
265,972 + Sama_0240 0.43 -2.3
265,973 - Sama_0240 0.43 +1.4
265,973 - Sama_0240 0.43 -1.0
265,973 - Sama_0240 0.43 +1.0
265,973 - Sama_0240 0.43 -0.6
265,986 + Sama_0240 0.44 +0.1
265,986 + Sama_0240 0.44 +0.0
265,986 + Sama_0240 0.44 +0.8
265,987 - Sama_0240 0.44 +0.0
265,987 - Sama_0240 0.44 +0.1
265,999 + Sama_0240 0.45 -1.0
266,000 - Sama_0240 0.45 -1.1
266,000 - Sama_0240 0.45 +1.7
266,000 - Sama_0240 0.45 -2.7
266,000 - Sama_0240 0.45 -0.1
266,000 - Sama_0240 0.45 -1.1
266,000 - Sama_0240 0.45 -0.2
266,003 + Sama_0240 0.46 +0.4
266,003 + Sama_0240 0.46 -2.0
266,003 + Sama_0240 0.46 -1.1
266,003 + Sama_0240 0.46 +1.5
266,003 + Sama_0240 0.46 -0.1
266,004 - Sama_0240 0.46 +0.1
266,004 - Sama_0240 0.46 -0.2
266,004 - Sama_0240 0.46 -1.0
266,004 - Sama_0240 0.46 +1.2
266,004 - Sama_0240 0.46 +1.8
266,004 - Sama_0240 0.46 +0.2
266,004 - Sama_0240 0.46 -0.1
266,047 - Sama_0240 0.50 +0.3
266,047 - Sama_0240 0.50 +0.0
266,062 + Sama_0240 0.52 +0.1
266,062 + Sama_0240 0.52 +0.5
266,063 - Sama_0240 0.52 -0.9
266,063 - Sama_0240 0.52 +0.3
266,063 - Sama_0240 0.52 +0.8
266,072 - Sama_0240 0.53 +2.4
266,106 + Sama_0240 0.56 +1.5
266,106 + Sama_0240 0.56 +0.3
266,113 + Sama_0240 0.57 +0.7
266,191 - Sama_0240 0.65 +0.5
266,191 - Sama_0240 0.65 +0.5
266,197 - Sama_0240 0.66 -1.0
266,197 - Sama_0240 0.66 +0.1
266,209 + Sama_0240 0.67 -1.2
266,209 + Sama_0240 0.67 -2.0
266,209 + Sama_0240 0.67 -1.0
266,209 + Sama_0240 0.67 -0.4
266,210 - Sama_0240 0.67 +0.2
266,210 - Sama_0240 0.67 -0.2
266,223 + Sama_0240 0.68 -0.7
266,224 - Sama_0240 0.69 +0.2
266,224 - Sama_0240 0.69 -0.1
266,245 + Sama_0240 0.71 +0.3
266,262 + Sama_0240 0.72 -1.5
266,278 + Sama_0240 0.74 +2.7
266,295 - Sama_0240 0.76 -0.5
266,295 - Sama_0240 0.76 +1.8
266,295 - Sama_0240 0.76 -0.8
266,336 + Sama_0240 0.80 +0.3
266,336 + Sama_0240 0.80 +1.2
266,336 + Sama_0240 0.80 +0.5
266,336 + Sama_0240 0.80 +1.0
266,337 - Sama_0240 0.80 -1.7
266,410 - Sama_0240 0.88 -1.4
266,420 + Sama_0240 0.89 -0.9
266,420 + Sama_0240 0.89 +1.4
266,420 + Sama_0240 0.89 -0.8
266,420 + Sama_0240 0.89 -0.8
266,420 + Sama_0240 0.89 -1.0
266,421 - Sama_0240 0.89 +0.2
266,438 + -0.0
266,450 + -0.2
266,458 + -0.5
266,458 + +0.2
266,458 + -1.5
266,458 + -0.0
266,459 - -0.2
266,459 - -1.1
266,459 - -0.6
266,459 - +0.6
266,459 - -0.1
266,459 - +0.0
266,459 - -2.1
266,459 - -0.2
266,460 + +0.5
266,461 - +0.3
266,461 - -0.4
266,461 - -0.6
266,463 + -0.5
266,463 + +1.4
266,463 + +0.5
266,463 + +1.0
266,463 + -0.3
266,463 + -0.0
266,463 + -1.0
266,463 + -0.4
266,464 - +1.7
266,464 - +1.0
266,464 - -0.1
266,464 - +0.6
266,464 - +0.2
266,464 - -0.2
266,464 - +1.5
266,467 + +0.4
266,467 + -0.0
266,467 + +1.5
266,468 - +0.5
266,468 - -0.5
266,494 + +0.4

Or see this region's nucleotide sequence