Experiment: Putrescine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO4484 and SO4485 are separated by 53 nucleotides SO4485 and SO4486 overlap by 8 nucleotides SO4486 and SO4487 overlap by 1 nucleotides SO4487 and SO4488 are separated by 2 nucleotides
SO4484: SO4484 - cytochrome c-type protein Shp (NCBI ptt file), at 4,672,877 to 4,673,311
SO4484
SO4485: SO4485 - diheme cytochrome c (NCBI ptt file), at 4,673,365 to 4,673,928
SO4485
SO4486: SO4486 - conserved hypothetical protein (NCBI ptt file), at 4,673,921 to 4,674,187
SO4486
SO4487: SO4487 - DNA-binding response regulator (NCBI ptt file), at 4,674,187 to 4,674,849
SO4487
SO4488: SO4488 - sensor histidine kinase (NCBI ptt file), at 4,674,852 to 4,676,168
SO4488
Position (kb) 4673
4674
4675 Strain fitness (log2 ratio) -2
-1
0
1 at 4673.031 kb on + strand, within SO4484 at 4673.070 kb on + strand, within SO4484 at 4673.070 kb on + strand, within SO4484 at 4673.087 kb on - strand, within SO4484 at 4673.267 kb on - strand, within SO4484 at 4673.267 kb on - strand, within SO4484 at 4673.267 kb on - strand, within SO4484 at 4673.280 kb on + strand at 4673.290 kb on + strand at 4673.290 kb on + strand at 4673.297 kb on - strand at 4673.416 kb on + strand at 4673.431 kb on - strand, within SO4485 at 4673.449 kb on + strand, within SO4485 at 4673.449 kb on + strand, within SO4485 at 4673.457 kb on - strand, within SO4485 at 4673.458 kb on - strand, within SO4485 at 4673.642 kb on + strand, within SO4485 at 4673.644 kb on - strand, within SO4485 at 4673.806 kb on + strand, within SO4485 at 4673.879 kb on - strand at 4673.939 kb on - strand at 4673.982 kb on + strand, within SO4486 at 4673.992 kb on + strand, within SO4486 at 4674.000 kb on - strand, within SO4486 at 4674.172 kb on + strand at 4674.231 kb on + strand at 4674.271 kb on - strand, within SO4487 at 4674.346 kb on - strand, within SO4487 at 4674.370 kb on - strand, within SO4487 at 4674.410 kb on + strand, within SO4487 at 4674.410 kb on + strand, within SO4487 at 4674.410 kb on + strand, within SO4487 at 4674.418 kb on - strand, within SO4487 at 4674.418 kb on - strand, within SO4487 at 4674.534 kb on - strand, within SO4487 at 4674.584 kb on + strand, within SO4487 at 4674.637 kb on - strand, within SO4487 at 4674.661 kb on + strand, within SO4487 at 4674.770 kb on - strand, within SO4487 at 4674.798 kb on + strand at 4674.806 kb on - strand at 4674.806 kb on - strand at 4674.806 kb on - strand at 4674.820 kb on + strand at 4674.842 kb on - strand at 4674.861 kb on - strand at 4674.885 kb on - strand at 4674.899 kb on + strand at 4674.902 kb on - strand at 4675.065 kb on + strand, within SO4488 at 4675.066 kb on - strand, within SO4488 at 4675.075 kb on + strand, within SO4488 at 4675.099 kb on - strand, within SO4488 at 4675.137 kb on + strand, within SO4488
Per-strain Table
Position Strand Gene LocusTag Fraction Putrescine (N) remove 4,673,031 + SO4484 0.35 +1.1 4,673,070 + SO4484 0.44 -1.2 4,673,070 + SO4484 0.44 +0.2 4,673,087 - SO4484 0.48 +0.4 4,673,267 - SO4484 0.90 -1.4 4,673,267 - SO4484 0.90 +0.5 4,673,267 - SO4484 0.90 +0.0 4,673,280 + -0.2 4,673,290 + +0.2 4,673,290 + +1.3 4,673,297 - +0.4 4,673,416 + +0.6 4,673,431 - SO4485 0.12 +0.1 4,673,449 + SO4485 0.15 +0.1 4,673,449 + SO4485 0.15 -0.6 4,673,457 - SO4485 0.16 -0.1 4,673,458 - SO4485 0.16 +0.7 4,673,642 + SO4485 0.49 -0.2 4,673,644 - SO4485 0.49 +0.0 4,673,806 + SO4485 0.78 +0.2 4,673,879 - +0.9 4,673,939 - +1.0 4,673,982 + SO4486 0.23 -1.0 4,673,992 + SO4486 0.27 -1.9 4,674,000 - SO4486 0.30 -1.1 4,674,172 + -0.5 4,674,231 + +0.1 4,674,271 - SO4487 0.13 +0.7 4,674,346 - SO4487 0.24 +0.0 4,674,370 - SO4487 0.28 +0.4 4,674,410 + SO4487 0.34 -0.4 4,674,410 + SO4487 0.34 -0.4 4,674,410 + SO4487 0.34 +0.5 4,674,418 - SO4487 0.35 +0.2 4,674,418 - SO4487 0.35 -0.5 4,674,534 - SO4487 0.52 +0.3 4,674,584 + SO4487 0.60 +0.0 4,674,637 - SO4487 0.68 -0.2 4,674,661 + SO4487 0.71 +0.4 4,674,770 - SO4487 0.88 -0.3 4,674,798 + -1.1 4,674,806 - +0.7 4,674,806 - -0.0 4,674,806 - +0.5 4,674,820 + -0.9 4,674,842 - -0.2 4,674,861 - -0.7 4,674,885 - -0.7 4,674,899 + -0.4 4,674,902 - -0.3 4,675,065 + SO4488 0.16 -0.3 4,675,066 - SO4488 0.16 -0.6 4,675,075 + SO4488 0.17 -0.5 4,675,099 - SO4488 0.19 -1.0 4,675,137 + SO4488 0.22 -0.6
Or see this region's nucleotide sequence