Experiment: Putrescine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO3494 and SO3495 are separated by 105 nucleotides SO3495 and SO3496 are separated by 272 nucleotides SO3496 and SO3497 are separated by 281 nucleotides
SO3494: SO3494 - transcriptional regulator, TetR family (NCBI ptt file), at 3,644,704 to 3,645,336
SO3494
SO3495: SO3495 - conserved hypothetical protein (NCBI ptt file), at 3,645,442 to 3,645,870
SO3495
SO3496: SO3496 - aldehyde dehydrogenase (NCBI ptt file), at 3,646,143 to 3,647,639
SO3496
SO3497: SO3497 - aminotransferase, class III (NCBI ptt file), at 3,647,921 to 3,649,261
SO3497
Position (kb)
3646
3647
3648 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 3645.398 kb on - strand at 3645.408 kb on - strand at 3645.415 kb on - strand at 3645.415 kb on - strand at 3645.497 kb on + strand, within SO3495 at 3645.511 kb on - strand, within SO3495 at 3645.513 kb on - strand, within SO3495 at 3645.513 kb on - strand, within SO3495 at 3645.513 kb on - strand, within SO3495 at 3645.582 kb on + strand, within SO3495 at 3645.590 kb on - strand, within SO3495 at 3645.649 kb on - strand, within SO3495 at 3645.783 kb on - strand, within SO3495 at 3645.960 kb on + strand at 3645.967 kb on - strand at 3645.981 kb on - strand at 3645.981 kb on - strand at 3645.988 kb on - strand at 3645.993 kb on + strand at 3646.000 kb on + strand at 3646.008 kb on - strand at 3646.111 kb on + strand at 3646.223 kb on + strand at 3646.223 kb on + strand at 3646.223 kb on + strand at 3646.223 kb on + strand at 3646.223 kb on + strand at 3646.231 kb on - strand at 3646.231 kb on - strand at 3646.276 kb on - strand at 3646.290 kb on + strand at 3646.528 kb on + strand, within SO3496 at 3646.533 kb on + strand, within SO3496 at 3646.536 kb on - strand, within SO3496 at 3646.541 kb on - strand, within SO3496 at 3646.561 kb on + strand, within SO3496 at 3646.569 kb on - strand, within SO3496 at 3646.569 kb on - strand, within SO3496 at 3646.569 kb on - strand, within SO3496 at 3646.580 kb on - strand, within SO3496 at 3646.580 kb on - strand, within SO3496 at 3646.582 kb on + strand, within SO3496 at 3646.582 kb on + strand, within SO3496 at 3646.590 kb on - strand, within SO3496 at 3646.590 kb on - strand, within SO3496 at 3646.652 kb on - strand, within SO3496 at 3646.729 kb on + strand, within SO3496 at 3646.742 kb on - strand, within SO3496 at 3646.745 kb on + strand, within SO3496 at 3646.835 kb on + strand, within SO3496 at 3646.835 kb on + strand, within SO3496 at 3646.835 kb on + strand, within SO3496 at 3646.835 kb on + strand, within SO3496 at 3646.835 kb on + strand, within SO3496 at 3646.835 kb on + strand, within SO3496 at 3646.835 kb on + strand, within SO3496 at 3646.835 kb on + strand, within SO3496 at 3646.835 kb on + strand, within SO3496 at 3646.835 kb on + strand, within SO3496 at 3646.835 kb on + strand, within SO3496 at 3646.840 kb on + strand, within SO3496 at 3646.843 kb on - strand, within SO3496 at 3646.843 kb on - strand, within SO3496 at 3646.843 kb on - strand, within SO3496 at 3646.843 kb on - strand, within SO3496 at 3646.843 kb on - strand, within SO3496 at 3646.914 kb on + strand, within SO3496 at 3646.914 kb on + strand, within SO3496 at 3646.930 kb on + strand, within SO3496 at 3646.993 kb on + strand, within SO3496 at 3647.001 kb on - strand, within SO3496 at 3647.001 kb on - strand, within SO3496 at 3647.070 kb on - strand, within SO3496 at 3647.168 kb on - strand, within SO3496 at 3647.404 kb on + strand, within SO3496 at 3647.411 kb on + strand, within SO3496 at 3647.413 kb on - strand, within SO3496 at 3647.458 kb on - strand, within SO3496 at 3647.529 kb on + strand at 3647.538 kb on - strand at 3647.630 kb on - strand at 3647.645 kb on - strand at 3647.690 kb on + strand at 3647.698 kb on - strand at 3647.698 kb on - strand at 3647.698 kb on - strand at 3647.878 kb on + strand at 3647.918 kb on - strand at 3647.933 kb on + strand at 3647.938 kb on - strand at 3647.956 kb on + strand at 3647.963 kb on + strand at 3647.971 kb on - strand at 3647.979 kb on - strand at 3647.981 kb on + strand at 3648.043 kb on + strand at 3648.046 kb on - strand at 3648.051 kb on - strand at 3648.071 kb on + strand, within SO3497 at 3648.071 kb on + strand, within SO3497 at 3648.079 kb on - strand, within SO3497 at 3648.089 kb on + strand, within SO3497 at 3648.089 kb on + strand, within SO3497 at 3648.201 kb on + strand, within SO3497 at 3648.209 kb on - strand, within SO3497 at 3648.242 kb on - strand, within SO3497 at 3648.421 kb on + strand, within SO3497 at 3648.436 kb on - strand, within SO3497 at 3648.453 kb on + strand, within SO3497 at 3648.460 kb on - strand, within SO3497 at 3648.463 kb on - strand, within SO3497 at 3648.500 kb on + strand, within SO3497 at 3648.632 kb on + strand, within SO3497 at 3648.632 kb on + strand, within SO3497
Per-strain Table
Position Strand Gene LocusTag Fraction Putrescine (N) remove 3,645,398 - +1.2 3,645,408 - -0.5 3,645,415 - -0.4 3,645,415 - +0.8 3,645,497 + SO3495 0.13 -0.2 3,645,511 - SO3495 0.16 +0.2 3,645,513 - SO3495 0.17 -0.5 3,645,513 - SO3495 0.17 +0.9 3,645,513 - SO3495 0.17 +0.3 3,645,582 + SO3495 0.33 +0.6 3,645,590 - SO3495 0.34 +0.5 3,645,649 - SO3495 0.48 -1.0 3,645,783 - SO3495 0.79 +0.2 3,645,960 + -0.3 3,645,967 - -0.6 3,645,981 - +0.8 3,645,981 - -0.3 3,645,988 - +0.3 3,645,993 + +1.5 3,646,000 + +0.4 3,646,008 - +0.9 3,646,111 + -0.4 3,646,223 + -4.0 3,646,223 + -4.8 3,646,223 + -4.1 3,646,223 + -4.0 3,646,223 + -3.9 3,646,231 - -3.2 3,646,231 - -4.1 3,646,276 - -3.0 3,646,290 + -5.2 3,646,528 + SO3496 0.26 -4.6 3,646,533 + SO3496 0.26 -3.1 3,646,536 - SO3496 0.26 -3.2 3,646,541 - SO3496 0.27 -3.7 3,646,561 + SO3496 0.28 -3.3 3,646,569 - SO3496 0.28 -4.5 3,646,569 - SO3496 0.28 -3.6 3,646,569 - SO3496 0.28 -4.8 3,646,580 - SO3496 0.29 -4.5 3,646,580 - SO3496 0.29 -3.6 3,646,582 + SO3496 0.29 -3.8 3,646,582 + SO3496 0.29 -4.4 3,646,590 - SO3496 0.30 -4.8 3,646,590 - SO3496 0.30 -1.6 3,646,652 - SO3496 0.34 -5.5 3,646,729 + SO3496 0.39 -3.5 3,646,742 - SO3496 0.40 -3.1 3,646,745 + SO3496 0.40 -3.7 3,646,835 + SO3496 0.46 -5.9 3,646,835 + SO3496 0.46 -4.0 3,646,835 + SO3496 0.46 -4.3 3,646,835 + SO3496 0.46 -4.2 3,646,835 + SO3496 0.46 -2.7 3,646,835 + SO3496 0.46 -3.8 3,646,835 + SO3496 0.46 -3.6 3,646,835 + SO3496 0.46 -4.4 3,646,835 + SO3496 0.46 -5.6 3,646,835 + SO3496 0.46 -3.4 3,646,835 + SO3496 0.46 -3.5 3,646,840 + SO3496 0.47 -4.2 3,646,843 - SO3496 0.47 -4.8 3,646,843 - SO3496 0.47 -4.5 3,646,843 - SO3496 0.47 -5.1 3,646,843 - SO3496 0.47 -5.4 3,646,843 - SO3496 0.47 -1.4 3,646,914 + SO3496 0.52 -4.4 3,646,914 + SO3496 0.52 -4.1 3,646,930 + SO3496 0.53 -4.0 3,646,993 + SO3496 0.57 -2.0 3,647,001 - SO3496 0.57 -5.0 3,647,001 - SO3496 0.57 -3.5 3,647,070 - SO3496 0.62 -2.4 3,647,168 - SO3496 0.68 -4.6 3,647,404 + SO3496 0.84 -3.2 3,647,411 + SO3496 0.85 -0.4 3,647,413 - SO3496 0.85 -4.5 3,647,458 - SO3496 0.88 -2.5 3,647,529 + -4.2 3,647,538 - -3.4 3,647,630 - -3.2 3,647,645 - -2.2 3,647,690 + -3.9 3,647,698 - -0.7 3,647,698 - -2.0 3,647,698 - -1.2 3,647,878 + +0.1 3,647,918 - -0.1 3,647,933 + +0.0 3,647,938 - +0.6 3,647,956 + -0.2 3,647,963 + +0.1 3,647,971 - +1.0 3,647,979 - -0.0 3,647,981 + +0.4 3,648,043 + +0.4 3,648,046 - +0.5 3,648,051 - +0.1 3,648,071 + SO3497 0.11 -0.1 3,648,071 + SO3497 0.11 +0.4 3,648,079 - SO3497 0.12 +1.2 3,648,089 + SO3497 0.13 -1.8 3,648,089 + SO3497 0.13 +0.2 3,648,201 + SO3497 0.21 +1.2 3,648,209 - SO3497 0.21 -0.2 3,648,242 - SO3497 0.24 +0.5 3,648,421 + SO3497 0.37 +0.6 3,648,436 - SO3497 0.38 +0.1 3,648,453 + SO3497 0.40 +0.9 3,648,460 - SO3497 0.40 +0.1 3,648,463 - SO3497 0.40 +0.8 3,648,500 + SO3497 0.43 +0.8 3,648,632 + SO3497 0.53 +0.1 3,648,632 + SO3497 0.53 +0.8
Or see this region's nucleotide sequence