Strain Fitness in Shewanella oneidensis MR-1 around SO3496

Experiment: Putrescine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO3494 and SO3495 are separated by 105 nucleotidesSO3495 and SO3496 are separated by 272 nucleotidesSO3496 and SO3497 are separated by 281 nucleotides SO3494: SO3494 - transcriptional regulator, TetR family (NCBI ptt file), at 3,644,704 to 3,645,336 SO3494 SO3495: SO3495 - conserved hypothetical protein (NCBI ptt file), at 3,645,442 to 3,645,870 SO3495 SO3496: SO3496 - aldehyde dehydrogenase (NCBI ptt file), at 3,646,143 to 3,647,639 SO3496 SO3497: SO3497 - aminotransferase, class III (NCBI ptt file), at 3,647,921 to 3,649,261 SO3497 Position (kb) 3646 3647 3648Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 3645.398 kb on - strandat 3645.408 kb on - strandat 3645.415 kb on - strandat 3645.415 kb on - strandat 3645.497 kb on + strand, within SO3495at 3645.511 kb on - strand, within SO3495at 3645.513 kb on - strand, within SO3495at 3645.513 kb on - strand, within SO3495at 3645.513 kb on - strand, within SO3495at 3645.582 kb on + strand, within SO3495at 3645.590 kb on - strand, within SO3495at 3645.649 kb on - strand, within SO3495at 3645.783 kb on - strand, within SO3495at 3645.960 kb on + strandat 3645.967 kb on - strandat 3645.981 kb on - strandat 3645.981 kb on - strandat 3645.988 kb on - strandat 3645.993 kb on + strandat 3646.000 kb on + strandat 3646.008 kb on - strandat 3646.111 kb on + strandat 3646.223 kb on + strandat 3646.223 kb on + strandat 3646.223 kb on + strandat 3646.223 kb on + strandat 3646.223 kb on + strandat 3646.231 kb on - strandat 3646.231 kb on - strandat 3646.276 kb on - strandat 3646.290 kb on + strandat 3646.528 kb on + strand, within SO3496at 3646.533 kb on + strand, within SO3496at 3646.536 kb on - strand, within SO3496at 3646.541 kb on - strand, within SO3496at 3646.561 kb on + strand, within SO3496at 3646.569 kb on - strand, within SO3496at 3646.569 kb on - strand, within SO3496at 3646.569 kb on - strand, within SO3496at 3646.580 kb on - strand, within SO3496at 3646.580 kb on - strand, within SO3496at 3646.582 kb on + strand, within SO3496at 3646.582 kb on + strand, within SO3496at 3646.590 kb on - strand, within SO3496at 3646.590 kb on - strand, within SO3496at 3646.652 kb on - strand, within SO3496at 3646.729 kb on + strand, within SO3496at 3646.742 kb on - strand, within SO3496at 3646.745 kb on + strand, within SO3496at 3646.835 kb on + strand, within SO3496at 3646.835 kb on + strand, within SO3496at 3646.835 kb on + strand, within SO3496at 3646.835 kb on + strand, within SO3496at 3646.835 kb on + strand, within SO3496at 3646.835 kb on + strand, within SO3496at 3646.835 kb on + strand, within SO3496at 3646.835 kb on + strand, within SO3496at 3646.835 kb on + strand, within SO3496at 3646.835 kb on + strand, within SO3496at 3646.835 kb on + strand, within SO3496at 3646.840 kb on + strand, within SO3496at 3646.843 kb on - strand, within SO3496at 3646.843 kb on - strand, within SO3496at 3646.843 kb on - strand, within SO3496at 3646.843 kb on - strand, within SO3496at 3646.843 kb on - strand, within SO3496at 3646.914 kb on + strand, within SO3496at 3646.914 kb on + strand, within SO3496at 3646.930 kb on + strand, within SO3496at 3646.993 kb on + strand, within SO3496at 3647.001 kb on - strand, within SO3496at 3647.001 kb on - strand, within SO3496at 3647.070 kb on - strand, within SO3496at 3647.168 kb on - strand, within SO3496at 3647.404 kb on + strand, within SO3496at 3647.411 kb on + strand, within SO3496at 3647.413 kb on - strand, within SO3496at 3647.458 kb on - strand, within SO3496at 3647.529 kb on + strandat 3647.538 kb on - strandat 3647.630 kb on - strandat 3647.645 kb on - strandat 3647.690 kb on + strandat 3647.698 kb on - strandat 3647.698 kb on - strandat 3647.698 kb on - strandat 3647.878 kb on + strandat 3647.918 kb on - strandat 3647.933 kb on + strandat 3647.938 kb on - strandat 3647.956 kb on + strandat 3647.963 kb on + strandat 3647.971 kb on - strandat 3647.979 kb on - strandat 3647.981 kb on + strandat 3648.043 kb on + strandat 3648.046 kb on - strandat 3648.051 kb on - strandat 3648.071 kb on + strand, within SO3497at 3648.071 kb on + strand, within SO3497at 3648.079 kb on - strand, within SO3497at 3648.089 kb on + strand, within SO3497at 3648.089 kb on + strand, within SO3497at 3648.201 kb on + strand, within SO3497at 3648.209 kb on - strand, within SO3497at 3648.242 kb on - strand, within SO3497at 3648.421 kb on + strand, within SO3497at 3648.436 kb on - strand, within SO3497at 3648.453 kb on + strand, within SO3497at 3648.460 kb on - strand, within SO3497at 3648.463 kb on - strand, within SO3497at 3648.500 kb on + strand, within SO3497at 3648.632 kb on + strand, within SO3497at 3648.632 kb on + strand, within SO3497

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Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine (N)
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3,645,398 - +1.2
3,645,408 - -0.5
3,645,415 - -0.4
3,645,415 - +0.8
3,645,497 + SO3495 0.13 -0.2
3,645,511 - SO3495 0.16 +0.2
3,645,513 - SO3495 0.17 -0.5
3,645,513 - SO3495 0.17 +0.9
3,645,513 - SO3495 0.17 +0.3
3,645,582 + SO3495 0.33 +0.6
3,645,590 - SO3495 0.34 +0.5
3,645,649 - SO3495 0.48 -1.0
3,645,783 - SO3495 0.79 +0.2
3,645,960 + -0.3
3,645,967 - -0.6
3,645,981 - +0.8
3,645,981 - -0.3
3,645,988 - +0.3
3,645,993 + +1.5
3,646,000 + +0.4
3,646,008 - +0.9
3,646,111 + -0.4
3,646,223 + -4.0
3,646,223 + -4.8
3,646,223 + -4.1
3,646,223 + -4.0
3,646,223 + -3.9
3,646,231 - -3.2
3,646,231 - -4.1
3,646,276 - -3.0
3,646,290 + -5.2
3,646,528 + SO3496 0.26 -4.6
3,646,533 + SO3496 0.26 -3.1
3,646,536 - SO3496 0.26 -3.2
3,646,541 - SO3496 0.27 -3.7
3,646,561 + SO3496 0.28 -3.3
3,646,569 - SO3496 0.28 -4.5
3,646,569 - SO3496 0.28 -3.6
3,646,569 - SO3496 0.28 -4.8
3,646,580 - SO3496 0.29 -4.5
3,646,580 - SO3496 0.29 -3.6
3,646,582 + SO3496 0.29 -3.8
3,646,582 + SO3496 0.29 -4.4
3,646,590 - SO3496 0.30 -4.8
3,646,590 - SO3496 0.30 -1.6
3,646,652 - SO3496 0.34 -5.5
3,646,729 + SO3496 0.39 -3.5
3,646,742 - SO3496 0.40 -3.1
3,646,745 + SO3496 0.40 -3.7
3,646,835 + SO3496 0.46 -5.9
3,646,835 + SO3496 0.46 -4.0
3,646,835 + SO3496 0.46 -4.3
3,646,835 + SO3496 0.46 -4.2
3,646,835 + SO3496 0.46 -2.7
3,646,835 + SO3496 0.46 -3.8
3,646,835 + SO3496 0.46 -3.6
3,646,835 + SO3496 0.46 -4.4
3,646,835 + SO3496 0.46 -5.6
3,646,835 + SO3496 0.46 -3.4
3,646,835 + SO3496 0.46 -3.5
3,646,840 + SO3496 0.47 -4.2
3,646,843 - SO3496 0.47 -4.8
3,646,843 - SO3496 0.47 -4.5
3,646,843 - SO3496 0.47 -5.1
3,646,843 - SO3496 0.47 -5.4
3,646,843 - SO3496 0.47 -1.4
3,646,914 + SO3496 0.52 -4.4
3,646,914 + SO3496 0.52 -4.1
3,646,930 + SO3496 0.53 -4.0
3,646,993 + SO3496 0.57 -2.0
3,647,001 - SO3496 0.57 -5.0
3,647,001 - SO3496 0.57 -3.5
3,647,070 - SO3496 0.62 -2.4
3,647,168 - SO3496 0.68 -4.6
3,647,404 + SO3496 0.84 -3.2
3,647,411 + SO3496 0.85 -0.4
3,647,413 - SO3496 0.85 -4.5
3,647,458 - SO3496 0.88 -2.5
3,647,529 + -4.2
3,647,538 - -3.4
3,647,630 - -3.2
3,647,645 - -2.2
3,647,690 + -3.9
3,647,698 - -0.7
3,647,698 - -2.0
3,647,698 - -1.2
3,647,878 + +0.1
3,647,918 - -0.1
3,647,933 + +0.0
3,647,938 - +0.6
3,647,956 + -0.2
3,647,963 + +0.1
3,647,971 - +1.0
3,647,979 - -0.0
3,647,981 + +0.4
3,648,043 + +0.4
3,648,046 - +0.5
3,648,051 - +0.1
3,648,071 + SO3497 0.11 -0.1
3,648,071 + SO3497 0.11 +0.4
3,648,079 - SO3497 0.12 +1.2
3,648,089 + SO3497 0.13 -1.8
3,648,089 + SO3497 0.13 +0.2
3,648,201 + SO3497 0.21 +1.2
3,648,209 - SO3497 0.21 -0.2
3,648,242 - SO3497 0.24 +0.5
3,648,421 + SO3497 0.37 +0.6
3,648,436 - SO3497 0.38 +0.1
3,648,453 + SO3497 0.40 +0.9
3,648,460 - SO3497 0.40 +0.1
3,648,463 - SO3497 0.40 +0.8
3,648,500 + SO3497 0.43 +0.8
3,648,632 + SO3497 0.53 +0.1
3,648,632 + SO3497 0.53 +0.8

Or see this region's nucleotide sequence