Experiment: Putrescine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0407 and gppA are separated by 0 nucleotides gppA and SO0409 are separated by 99 nucleotides SO0409 and mutT are separated by 138 nucleotides
SO0407: SO0407 - ATP-dependent RNA helicase, DEAD box family (NCBI ptt file), at 423,730 to 425,049
SO0407
SO0408: gppA - guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase (NCBI ptt file), at 425,050 to 425,970
gppA
SO0409: SO0409 - hypothetical protein (NCBI ptt file), at 426,070 to 426,606
SO0409
SO0410: mutT - mutator mutT protein (NCBI ptt file), at 426,745 to 427,137
mutT
Position (kb) 425
426 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 424.064 kb on + strand, within SO0407 at 424.098 kb on - strand, within SO0407 at 424.130 kb on - strand, within SO0407 at 424.213 kb on + strand, within SO0407 at 424.216 kb on + strand, within SO0407 at 424.342 kb on + strand, within SO0407 at 424.342 kb on + strand, within SO0407 at 424.350 kb on - strand, within SO0407 at 424.554 kb on + strand, within SO0407 at 424.564 kb on + strand, within SO0407 at 424.582 kb on - strand, within SO0407 at 424.584 kb on + strand, within SO0407 at 424.630 kb on + strand, within SO0407 at 424.630 kb on - strand, within SO0407 at 424.664 kb on + strand, within SO0407 at 424.744 kb on + strand, within SO0407 at 424.756 kb on + strand, within SO0407 at 424.780 kb on + strand, within SO0407 at 424.965 kb on + strand at 425.078 kb on + strand at 425.123 kb on - strand at 425.229 kb on - strand, within gppA at 425.258 kb on - strand, within gppA at 425.300 kb on + strand, within gppA at 425.341 kb on - strand, within gppA at 425.391 kb on + strand, within gppA at 425.443 kb on + strand, within gppA at 425.471 kb on - strand, within gppA at 425.568 kb on - strand, within gppA at 425.591 kb on + strand, within gppA at 425.623 kb on + strand, within gppA at 425.645 kb on + strand, within gppA at 425.966 kb on + strand at 426.044 kb on - strand at 426.118 kb on - strand at 426.156 kb on + strand, within SO0409 at 426.162 kb on + strand, within SO0409 at 426.164 kb on - strand, within SO0409 at 426.181 kb on + strand, within SO0409 at 426.356 kb on + strand, within SO0409 at 426.369 kb on + strand, within SO0409 at 426.369 kb on + strand, within SO0409 at 426.369 kb on + strand, within SO0409 at 426.369 kb on + strand, within SO0409 at 426.369 kb on + strand, within SO0409 at 426.377 kb on - strand, within SO0409 at 426.377 kb on - strand, within SO0409 at 426.447 kb on - strand, within SO0409 at 426.593 kb on + strand at 426.719 kb on + strand at 426.849 kb on + strand, within mutT
Per-strain Table
Position Strand Gene LocusTag Fraction Putrescine (N) remove 424,064 + SO0407 0.25 -1.2 424,098 - SO0407 0.28 -2.4 424,130 - SO0407 0.30 -0.7 424,213 + SO0407 0.37 -0.4 424,216 + SO0407 0.37 -0.7 424,342 + SO0407 0.46 -1.5 424,342 + SO0407 0.46 -0.4 424,350 - SO0407 0.47 -0.7 424,554 + SO0407 0.62 -1.3 424,564 + SO0407 0.63 -1.2 424,582 - SO0407 0.65 -1.0 424,584 + SO0407 0.65 -1.1 424,630 + SO0407 0.68 -0.3 424,630 - SO0407 0.68 -2.3 424,664 + SO0407 0.71 -0.3 424,744 + SO0407 0.77 -1.1 424,756 + SO0407 0.78 -2.2 424,780 + SO0407 0.80 -1.5 424,965 + -1.0 425,078 + -1.0 425,123 - -1.9 425,229 - gppA SO0408 0.19 -0.8 425,258 - gppA SO0408 0.23 -1.4 425,300 + gppA SO0408 0.27 -1.5 425,341 - gppA SO0408 0.32 -0.6 425,391 + gppA SO0408 0.37 -3.7 425,443 + gppA SO0408 0.43 +0.6 425,471 - gppA SO0408 0.46 -0.7 425,568 - gppA SO0408 0.56 -1.3 425,591 + gppA SO0408 0.59 -2.2 425,623 + gppA SO0408 0.62 -1.7 425,645 + gppA SO0408 0.65 -1.1 425,966 + +0.1 426,044 - +2.3 426,118 - +0.6 426,156 + SO0409 0.16 -0.7 426,162 + SO0409 0.17 -0.2 426,164 - SO0409 0.18 -0.3 426,181 + SO0409 0.21 -0.0 426,356 + SO0409 0.53 +0.0 426,369 + SO0409 0.56 +0.6 426,369 + SO0409 0.56 -0.5 426,369 + SO0409 0.56 +0.2 426,369 + SO0409 0.56 -0.3 426,369 + SO0409 0.56 +0.5 426,377 - SO0409 0.57 -0.6 426,377 - SO0409 0.57 -0.5 426,447 - SO0409 0.70 -0.1 426,593 + +0.1 426,719 + +0.3 426,849 + mutT SO0410 0.26 +0.8
Or see this region's nucleotide sequence