Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0648

Experiment: Benzalkonium Chloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0647 and Psest_0648 overlap by 4 nucleotidesPsest_0648 and Psest_0649 are separated by 11 nucleotides Psest_0647: Psest_0647 - Arabinose efflux permease, at 701,836 to 702,990 _0647 Psest_0648: Psest_0648 - Lysine/ornithine N-monooxygenase, at 702,987 to 704,306 _0648 Psest_0649: Psest_0649 - Glutamate decarboxylase and related PLP-dependent proteins, at 704,318 to 705,841 _0649 Position (kb) 702 703 704 705Strain fitness (log2 ratio) -2 -1 0 1 2 3at 702.041 kb on + strand, within Psest_0647at 702.042 kb on - strand, within Psest_0647at 702.099 kb on - strand, within Psest_0647at 702.218 kb on + strand, within Psest_0647at 702.218 kb on + strand, within Psest_0647at 702.219 kb on - strand, within Psest_0647at 702.219 kb on - strand, within Psest_0647at 702.263 kb on + strand, within Psest_0647at 702.315 kb on - strand, within Psest_0647at 702.341 kb on + strand, within Psest_0647at 702.341 kb on + strand, within Psest_0647at 702.341 kb on + strand, within Psest_0647at 702.342 kb on - strand, within Psest_0647at 702.342 kb on - strand, within Psest_0647at 702.342 kb on - strand, within Psest_0647at 702.342 kb on - strand, within Psest_0647at 702.353 kb on + strand, within Psest_0647at 702.353 kb on + strand, within Psest_0647at 702.353 kb on + strand, within Psest_0647at 702.354 kb on - strand, within Psest_0647at 702.354 kb on - strand, within Psest_0647at 702.354 kb on - strand, within Psest_0647at 702.533 kb on + strand, within Psest_0647at 702.533 kb on + strand, within Psest_0647at 702.533 kb on + strand, within Psest_0647at 702.534 kb on - strand, within Psest_0647at 702.534 kb on - strand, within Psest_0647at 702.534 kb on - strand, within Psest_0647at 702.610 kb on - strand, within Psest_0647at 702.648 kb on - strand, within Psest_0647at 702.648 kb on - strand, within Psest_0647at 702.653 kb on + strand, within Psest_0647at 702.653 kb on + strand, within Psest_0647at 702.653 kb on + strand, within Psest_0647at 702.653 kb on + strand, within Psest_0647at 702.653 kb on + strand, within Psest_0647at 702.654 kb on - strand, within Psest_0647at 702.654 kb on - strand, within Psest_0647at 702.654 kb on - strand, within Psest_0647at 702.665 kb on + strand, within Psest_0647at 702.666 kb on - strand, within Psest_0647at 702.861 kb on - strand, within Psest_0647at 702.908 kb on + strandat 702.908 kb on + strandat 702.908 kb on + strandat 702.909 kb on - strandat 702.917 kb on + strandat 703.070 kb on - strandat 703.207 kb on + strand, within Psest_0648at 703.207 kb on + strand, within Psest_0648at 703.207 kb on + strand, within Psest_0648at 703.207 kb on + strand, within Psest_0648at 703.207 kb on + strand, within Psest_0648at 703.207 kb on + strand, within Psest_0648at 703.207 kb on + strand, within Psest_0648at 703.208 kb on - strand, within Psest_0648at 703.208 kb on - strand, within Psest_0648at 703.208 kb on - strand, within Psest_0648at 703.208 kb on - strand, within Psest_0648at 703.208 kb on - strand, within Psest_0648at 703.333 kb on + strand, within Psest_0648at 703.459 kb on + strand, within Psest_0648at 703.459 kb on + strand, within Psest_0648at 703.459 kb on + strand, within Psest_0648at 703.459 kb on + strand, within Psest_0648at 703.459 kb on + strand, within Psest_0648at 703.459 kb on + strand, within Psest_0648at 703.459 kb on + strand, within Psest_0648at 703.459 kb on + strand, within Psest_0648at 703.459 kb on + strand, within Psest_0648at 703.459 kb on + strand, within Psest_0648at 703.459 kb on + strand, within Psest_0648at 703.472 kb on - strand, within Psest_0648at 703.472 kb on - strand, within Psest_0648at 703.472 kb on - strand, within Psest_0648at 703.507 kb on + strand, within Psest_0648at 703.507 kb on + strand, within Psest_0648at 703.507 kb on + strand, within Psest_0648at 703.508 kb on - strand, within Psest_0648at 703.567 kb on + strand, within Psest_0648at 703.568 kb on - strand, within Psest_0648at 703.568 kb on - strand, within Psest_0648at 703.612 kb on + strand, within Psest_0648at 703.612 kb on + strand, within Psest_0648at 703.612 kb on + strand, within Psest_0648at 703.612 kb on + strand, within Psest_0648at 703.612 kb on + strand, within Psest_0648at 703.613 kb on - strand, within Psest_0648at 703.693 kb on + strand, within Psest_0648at 703.696 kb on + strand, within Psest_0648at 703.696 kb on + strand, within Psest_0648at 703.696 kb on + strand, within Psest_0648at 703.696 kb on + strand, within Psest_0648at 703.697 kb on - strand, within Psest_0648at 703.774 kb on + strand, within Psest_0648at 703.774 kb on + strand, within Psest_0648at 703.774 kb on + strand, within Psest_0648at 703.775 kb on - strand, within Psest_0648at 703.775 kb on - strand, within Psest_0648at 703.775 kb on - strand, within Psest_0648at 703.775 kb on - strand, within Psest_0648at 703.828 kb on + strand, within Psest_0648at 703.828 kb on + strand, within Psest_0648at 703.829 kb on - strand, within Psest_0648at 703.851 kb on + strand, within Psest_0648at 703.852 kb on - strand, within Psest_0648at 704.002 kb on + strand, within Psest_0648at 704.011 kb on + strand, within Psest_0648at 704.011 kb on + strand, within Psest_0648at 704.011 kb on + strand, within Psest_0648at 704.012 kb on - strand, within Psest_0648at 704.012 kb on - strand, within Psest_0648at 704.047 kb on + strand, within Psest_0648at 704.047 kb on + strand, within Psest_0648at 704.048 kb on - strand, within Psest_0648at 704.048 kb on - strand, within Psest_0648at 704.048 kb on - strand, within Psest_0648at 704.048 kb on - strand, within Psest_0648at 704.056 kb on + strand, within Psest_0648at 704.080 kb on + strand, within Psest_0648at 704.080 kb on + strand, within Psest_0648at 704.080 kb on + strand, within Psest_0648at 704.081 kb on - strand, within Psest_0648at 704.186 kb on + strandat 704.187 kb on - strandat 704.293 kb on + strandat 704.293 kb on + strandat 704.293 kb on + strandat 704.294 kb on - strandat 704.294 kb on - strandat 704.294 kb on - strandat 704.294 kb on - strandat 704.339 kb on + strandat 704.340 kb on - strandat 704.671 kb on + strand, within Psest_0649at 704.672 kb on - strand, within Psest_0649at 704.817 kb on + strand, within Psest_0649at 704.817 kb on + strand, within Psest_0649at 704.817 kb on + strand, within Psest_0649at 704.817 kb on + strand, within Psest_0649at 704.818 kb on - strand, within Psest_0649at 704.818 kb on - strand, within Psest_0649at 704.818 kb on - strand, within Psest_0649at 704.818 kb on - strand, within Psest_0649at 704.818 kb on - strand, within Psest_0649at 704.818 kb on - strand, within Psest_0649at 704.818 kb on - strand, within Psest_0649at 704.818 kb on - strand, within Psest_0649at 704.967 kb on + strand, within Psest_0649

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.002 mg/ml
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702,041 + Psest_0647 0.18 -0.0
702,042 - Psest_0647 0.18 +1.0
702,099 - Psest_0647 0.23 +1.0
702,218 + Psest_0647 0.33 +1.0
702,218 + Psest_0647 0.33 -0.6
702,219 - Psest_0647 0.33 +3.0
702,219 - Psest_0647 0.33 +0.6
702,263 + Psest_0647 0.37 -0.6
702,315 - Psest_0647 0.41 +0.3
702,341 + Psest_0647 0.44 +0.4
702,341 + Psest_0647 0.44 -0.6
702,341 + Psest_0647 0.44 +1.0
702,342 - Psest_0647 0.44 +0.3
702,342 - Psest_0647 0.44 +0.4
702,342 - Psest_0647 0.44 +0.7
702,342 - Psest_0647 0.44 -1.0
702,353 + Psest_0647 0.45 -0.3
702,353 + Psest_0647 0.45 +1.0
702,353 + Psest_0647 0.45 +0.2
702,354 - Psest_0647 0.45 -0.6
702,354 - Psest_0647 0.45 -0.0
702,354 - Psest_0647 0.45 -1.0
702,533 + Psest_0647 0.60 +0.7
702,533 + Psest_0647 0.60 -1.0
702,533 + Psest_0647 0.60 -1.7
702,534 - Psest_0647 0.60 -0.4
702,534 - Psest_0647 0.60 +0.4
702,534 - Psest_0647 0.60 +2.0
702,610 - Psest_0647 0.67 +0.3
702,648 - Psest_0647 0.70 -0.6
702,648 - Psest_0647 0.70 -0.0
702,653 + Psest_0647 0.71 -1.0
702,653 + Psest_0647 0.71 +2.6
702,653 + Psest_0647 0.71 +1.7
702,653 + Psest_0647 0.71 -0.4
702,653 + Psest_0647 0.71 +1.0
702,654 - Psest_0647 0.71 +0.4
702,654 - Psest_0647 0.71 -0.4
702,654 - Psest_0647 0.71 +1.0
702,665 + Psest_0647 0.72 -1.0
702,666 - Psest_0647 0.72 +1.0
702,861 - Psest_0647 0.89 +2.0
702,908 + -0.0
702,908 + -0.0
702,908 + +0.7
702,909 - +1.4
702,917 + -1.2
703,070 - +1.0
703,207 + Psest_0648 0.17 +3.2
703,207 + Psest_0648 0.17 +2.6
703,207 + Psest_0648 0.17 +0.7
703,207 + Psest_0648 0.17 -1.0
703,207 + Psest_0648 0.17 +0.1
703,207 + Psest_0648 0.17 -0.2
703,207 + Psest_0648 0.17 -1.2
703,208 - Psest_0648 0.17 -1.0
703,208 - Psest_0648 0.17 +2.0
703,208 - Psest_0648 0.17 +2.6
703,208 - Psest_0648 0.17 -0.0
703,208 - Psest_0648 0.17 +0.7
703,333 + Psest_0648 0.26 +0.9
703,459 + Psest_0648 0.36 +2.6
703,459 + Psest_0648 0.36 -0.3
703,459 + Psest_0648 0.36 +2.0
703,459 + Psest_0648 0.36 +1.9
703,459 + Psest_0648 0.36 +3.0
703,459 + Psest_0648 0.36 -1.2
703,459 + Psest_0648 0.36 +0.4
703,459 + Psest_0648 0.36 -0.6
703,459 + Psest_0648 0.36 +1.6
703,459 + Psest_0648 0.36 +0.1
703,459 + Psest_0648 0.36 +1.6
703,472 - Psest_0648 0.37 +1.4
703,472 - Psest_0648 0.37 +1.0
703,472 - Psest_0648 0.37 -0.4
703,507 + Psest_0648 0.39 +2.0
703,507 + Psest_0648 0.39 -1.0
703,507 + Psest_0648 0.39 -0.6
703,508 - Psest_0648 0.39 -1.0
703,567 + Psest_0648 0.44 +1.3
703,568 - Psest_0648 0.44 +0.3
703,568 - Psest_0648 0.44 -0.0
703,612 + Psest_0648 0.47 +0.9
703,612 + Psest_0648 0.47 -0.4
703,612 + Psest_0648 0.47 +1.6
703,612 + Psest_0648 0.47 -1.8
703,612 + Psest_0648 0.47 +0.3
703,613 - Psest_0648 0.47 +0.4
703,693 + Psest_0648 0.53 +0.3
703,696 + Psest_0648 0.54 -0.6
703,696 + Psest_0648 0.54 +1.0
703,696 + Psest_0648 0.54 +2.2
703,696 + Psest_0648 0.54 -0.6
703,697 - Psest_0648 0.54 -0.6
703,774 + Psest_0648 0.60 +0.3
703,774 + Psest_0648 0.60 -0.1
703,774 + Psest_0648 0.60 -0.7
703,775 - Psest_0648 0.60 -0.3
703,775 - Psest_0648 0.60 +1.0
703,775 - Psest_0648 0.60 -0.0
703,775 - Psest_0648 0.60 +1.0
703,828 + Psest_0648 0.64 -0.6
703,828 + Psest_0648 0.64 +0.3
703,829 - Psest_0648 0.64 -0.3
703,851 + Psest_0648 0.65 -0.6
703,852 - Psest_0648 0.66 -0.6
704,002 + Psest_0648 0.77 +0.7
704,011 + Psest_0648 0.78 +1.3
704,011 + Psest_0648 0.78 +1.7
704,011 + Psest_0648 0.78 -0.0
704,012 - Psest_0648 0.78 -0.4
704,012 - Psest_0648 0.78 +1.0
704,047 + Psest_0648 0.80 +2.0
704,047 + Psest_0648 0.80 -0.0
704,048 - Psest_0648 0.80 +1.7
704,048 - Psest_0648 0.80 -0.5
704,048 - Psest_0648 0.80 +0.7
704,048 - Psest_0648 0.80 +0.4
704,056 + Psest_0648 0.81 +1.0
704,080 + Psest_0648 0.83 +1.4
704,080 + Psest_0648 0.83 +1.7
704,080 + Psest_0648 0.83 +0.3
704,081 - Psest_0648 0.83 +1.6
704,186 + -0.6
704,187 - +0.8
704,293 + +1.0
704,293 + -0.0
704,293 + +0.3
704,294 - -2.0
704,294 - -0.7
704,294 - -1.0
704,294 - -0.7
704,339 + -0.3
704,340 - -0.0
704,671 + Psest_0649 0.23 +0.3
704,672 - Psest_0649 0.23 -1.6
704,817 + Psest_0649 0.33 +0.7
704,817 + Psest_0649 0.33 +2.9
704,817 + Psest_0649 0.33 +1.0
704,817 + Psest_0649 0.33 +1.0
704,818 - Psest_0649 0.33 -1.1
704,818 - Psest_0649 0.33 -0.7
704,818 - Psest_0649 0.33 +0.6
704,818 - Psest_0649 0.33 -0.6
704,818 - Psest_0649 0.33 -0.9
704,818 - Psest_0649 0.33 -0.6
704,818 - Psest_0649 0.33 -0.7
704,818 - Psest_0649 0.33 +2.0
704,967 + Psest_0649 0.43 +1.0

Or see this region's nucleotide sequence