Experiment: Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0479 and Psest_0480 overlap by 4 nucleotides Psest_0480 and Psest_0481 are separated by 153 nucleotides Psest_0481 and Psest_0482 are separated by 166 nucleotides Psest_0482 and Psest_0483 are separated by 63 nucleotides
Psest_0479: Psest_0479 - nudix-type nucleoside diphosphatase, YffH/AdpP family, at 529,637 to 530,254
_0479
Psest_0480: Psest_0480 - Uncharacterized protein conserved in bacteria, at 530,251 to 530,697
_0480
Psest_0481: Psest_0481 - Predicted phosphohydrolases, at 530,851 to 531,666
_0481
Psest_0482: Psest_0482 - yqiA-like hydrolase, affects the cell envelope <small>(from data)</small>, at 531,833 to 532,438
_0482
Psest_0483: Psest_0483 - DNA topoisomerase IV, B subunit, proteobacterial, at 532,502 to 534,481
_0483
Position (kb) 530
531
532 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 530.012 kb on + strand, within Psest_0479 at 530.012 kb on + strand, within Psest_0479 at 530.048 kb on + strand, within Psest_0479 at 530.048 kb on + strand, within Psest_0479 at 530.048 kb on + strand, within Psest_0479 at 530.048 kb on + strand, within Psest_0479 at 530.048 kb on + strand, within Psest_0479 at 530.048 kb on + strand, within Psest_0479 at 530.049 kb on - strand, within Psest_0479 at 530.049 kb on - strand, within Psest_0479 at 530.049 kb on - strand, within Psest_0479 at 530.049 kb on - strand, within Psest_0479 at 530.049 kb on - strand, within Psest_0479 at 530.049 kb on - strand, within Psest_0479 at 530.054 kb on + strand, within Psest_0479 at 530.054 kb on + strand, within Psest_0479 at 530.054 kb on + strand, within Psest_0479 at 530.054 kb on + strand, within Psest_0479 at 530.054 kb on + strand, within Psest_0479 at 530.054 kb on + strand, within Psest_0479 at 530.054 kb on + strand, within Psest_0479 at 530.055 kb on - strand, within Psest_0479 at 530.055 kb on - strand, within Psest_0479 at 530.055 kb on - strand, within Psest_0479 at 530.055 kb on - strand, within Psest_0479 at 530.055 kb on - strand, within Psest_0479 at 530.055 kb on - strand, within Psest_0479 at 530.055 kb on - strand, within Psest_0479 at 530.055 kb on - strand, within Psest_0479 at 530.055 kb on - strand, within Psest_0479 at 530.055 kb on - strand, within Psest_0479 at 530.055 kb on - strand, within Psest_0479 at 530.055 kb on - strand, within Psest_0479 at 530.055 kb on - strand, within Psest_0479 at 530.055 kb on - strand, within Psest_0479 at 530.119 kb on + strand, within Psest_0479 at 530.317 kb on + strand, within Psest_0480 at 530.317 kb on + strand, within Psest_0480 at 530.317 kb on + strand, within Psest_0480 at 530.317 kb on + strand, within Psest_0480 at 530.317 kb on + strand, within Psest_0480 at 530.317 kb on + strand, within Psest_0480 at 530.318 kb on - strand, within Psest_0480 at 530.318 kb on - strand, within Psest_0480 at 530.318 kb on - strand, within Psest_0480 at 530.318 kb on - strand, within Psest_0480 at 530.318 kb on - strand, within Psest_0480 at 530.321 kb on + strand, within Psest_0480 at 530.321 kb on + strand, within Psest_0480 at 530.321 kb on + strand, within Psest_0480 at 530.322 kb on - strand, within Psest_0480 at 530.322 kb on - strand, within Psest_0480 at 530.322 kb on - strand, within Psest_0480 at 530.515 kb on + strand, within Psest_0480 at 530.515 kb on + strand, within Psest_0480 at 530.578 kb on + strand, within Psest_0480 at 530.578 kb on + strand, within Psest_0480 at 530.578 kb on + strand, within Psest_0480 at 530.578 kb on + strand, within Psest_0480 at 530.578 kb on + strand, within Psest_0480 at 530.578 kb on + strand, within Psest_0480 at 530.579 kb on - strand, within Psest_0480 at 530.579 kb on - strand, within Psest_0480 at 530.579 kb on - strand, within Psest_0480 at 530.579 kb on - strand, within Psest_0480 at 530.579 kb on - strand, within Psest_0480 at 530.579 kb on - strand, within Psest_0480 at 530.579 kb on - strand, within Psest_0480 at 530.579 kb on - strand, within Psest_0480 at 530.585 kb on - strand, within Psest_0480 at 530.751 kb on + strand at 530.751 kb on + strand at 530.751 kb on + strand at 530.752 kb on - strand at 530.752 kb on - strand at 530.752 kb on - strand at 530.811 kb on + strand at 530.811 kb on + strand at 530.812 kb on - strand at 530.812 kb on - strand at 530.816 kb on + strand at 530.816 kb on + strand at 530.816 kb on + strand at 530.817 kb on - strand at 530.817 kb on - strand at 530.817 kb on - strand at 530.817 kb on - strand at 530.955 kb on + strand, within Psest_0481 at 531.662 kb on - strand at 531.738 kb on + strand at 531.746 kb on + strand at 531.746 kb on + strand at 531.746 kb on + strand at 531.746 kb on + strand at 531.746 kb on + strand at 531.746 kb on + strand at 531.747 kb on - strand at 531.747 kb on - strand at 531.747 kb on - strand at 531.747 kb on - strand at 531.747 kb on - strand at 531.747 kb on - strand at 531.802 kb on + strand at 531.802 kb on + strand at 531.803 kb on - strand at 531.803 kb on - strand at 531.820 kb on - strand at 531.860 kb on + strand at 531.860 kb on + strand at 531.860 kb on + strand at 531.860 kb on + strand at 531.860 kb on + strand at 531.860 kb on + strand at 531.860 kb on + strand at 531.860 kb on + strand at 531.860 kb on + strand at 531.861 kb on - strand at 531.861 kb on - strand at 531.861 kb on - strand at 531.861 kb on - strand at 531.861 kb on - strand at 531.861 kb on - strand at 531.861 kb on - strand at 531.862 kb on + strand at 531.862 kb on + strand at 531.862 kb on + strand at 531.862 kb on + strand at 531.862 kb on + strand at 531.862 kb on + strand at 531.862 kb on + strand at 531.862 kb on + strand at 531.862 kb on + strand at 531.862 kb on + strand at 531.862 kb on + strand at 531.862 kb on + strand at 531.862 kb on - strand at 531.863 kb on - strand at 531.863 kb on - strand at 531.863 kb on - strand at 531.863 kb on - strand at 531.863 kb on - strand at 531.863 kb on - strand at 531.863 kb on - strand at 531.863 kb on - strand at 531.863 kb on - strand at 531.863 kb on - strand at 531.863 kb on - strand at 531.863 kb on - strand at 531.863 kb on - strand at 531.864 kb on + strand at 531.864 kb on + strand at 531.864 kb on + strand at 531.864 kb on + strand at 531.864 kb on + strand at 531.864 kb on + strand at 531.864 kb on + strand at 531.864 kb on + strand at 531.864 kb on + strand at 531.864 kb on + strand at 531.864 kb on + strand at 531.864 kb on + strand at 531.865 kb on - strand at 531.865 kb on - strand at 531.865 kb on - strand at 531.865 kb on - strand at 531.865 kb on - strand at 531.865 kb on - strand at 531.865 kb on - strand at 531.865 kb on - strand at 531.865 kb on - strand at 531.865 kb on - strand at 531.865 kb on - strand at 531.865 kb on - strand at 531.865 kb on - strand at 532.056 kb on - strand, within Psest_0482 at 532.058 kb on + strand, within Psest_0482 at 532.058 kb on + strand, within Psest_0482 at 532.058 kb on + strand, within Psest_0482 at 532.142 kb on + strand, within Psest_0482 at 532.166 kb on + strand, within Psest_0482 at 532.292 kb on + strand, within Psest_0482 at 532.313 kb on + strand, within Psest_0482 at 532.313 kb on + strand, within Psest_0482 at 532.313 kb on + strand, within Psest_0482 at 532.333 kb on + strand, within Psest_0482 at 532.576 kb on + strand at 532.576 kb on + strand at 532.576 kb on + strand at 532.576 kb on + strand at 532.576 kb on + strand at 532.576 kb on + strand at 532.576 kb on + strand at 532.576 kb on + strand at 532.576 kb on + strand at 532.576 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.002 mg/ml remove 530,012 + Psest_0479 0.61 -1.2 530,012 + Psest_0479 0.61 +1.2 530,048 + Psest_0479 0.67 +0.6 530,048 + Psest_0479 0.67 -0.3 530,048 + Psest_0479 0.67 -0.4 530,048 + Psest_0479 0.67 +0.3 530,048 + Psest_0479 0.67 -1.6 530,048 + Psest_0479 0.67 +0.7 530,049 - Psest_0479 0.67 -0.7 530,049 - Psest_0479 0.67 -1.0 530,049 - Psest_0479 0.67 +1.3 530,049 - Psest_0479 0.67 -0.1 530,049 - Psest_0479 0.67 -0.9 530,049 - Psest_0479 0.67 -0.6 530,054 + Psest_0479 0.67 -0.3 530,054 + Psest_0479 0.67 +1.2 530,054 + Psest_0479 0.67 +0.3 530,054 + Psest_0479 0.67 +0.5 530,054 + Psest_0479 0.67 +0.2 530,054 + Psest_0479 0.67 +0.6 530,054 + Psest_0479 0.67 +0.7 530,055 - Psest_0479 0.68 -0.2 530,055 - Psest_0479 0.68 -0.6 530,055 - Psest_0479 0.68 -3.2 530,055 - Psest_0479 0.68 -1.5 530,055 - Psest_0479 0.68 -0.9 530,055 - Psest_0479 0.68 -0.0 530,055 - Psest_0479 0.68 -1.1 530,055 - Psest_0479 0.68 -1.1 530,055 - Psest_0479 0.68 -1.2 530,055 - Psest_0479 0.68 -1.6 530,055 - Psest_0479 0.68 -0.0 530,055 - Psest_0479 0.68 -0.5 530,055 - Psest_0479 0.68 -1.3 530,055 - Psest_0479 0.68 -1.2 530,119 + Psest_0479 0.78 -2.2 530,317 + Psest_0480 0.15 +2.0 530,317 + Psest_0480 0.15 -0.2 530,317 + Psest_0480 0.15 -2.0 530,317 + Psest_0480 0.15 -0.0 530,317 + Psest_0480 0.15 -0.1 530,317 + Psest_0480 0.15 -0.9 530,318 - Psest_0480 0.15 -0.5 530,318 - Psest_0480 0.15 -1.9 530,318 - Psest_0480 0.15 +1.8 530,318 - Psest_0480 0.15 -1.9 530,318 - Psest_0480 0.15 +0.6 530,321 + Psest_0480 0.16 -0.4 530,321 + Psest_0480 0.16 +3.6 530,321 + Psest_0480 0.16 -0.3 530,322 - Psest_0480 0.16 +0.2 530,322 - Psest_0480 0.16 -0.4 530,322 - Psest_0480 0.16 -0.5 530,515 + Psest_0480 0.59 -0.9 530,515 + Psest_0480 0.59 -0.7 530,578 + Psest_0480 0.73 -0.8 530,578 + Psest_0480 0.73 -1.3 530,578 + Psest_0480 0.73 +1.5 530,578 + Psest_0480 0.73 -1.6 530,578 + Psest_0480 0.73 +0.0 530,578 + Psest_0480 0.73 -0.8 530,579 - Psest_0480 0.73 -0.6 530,579 - Psest_0480 0.73 -0.5 530,579 - Psest_0480 0.73 -1.5 530,579 - Psest_0480 0.73 +1.4 530,579 - Psest_0480 0.73 +0.1 530,579 - Psest_0480 0.73 +1.0 530,579 - Psest_0480 0.73 -1.1 530,579 - Psest_0480 0.73 +0.6 530,585 - Psest_0480 0.75 -1.0 530,751 + +0.3 530,751 + +0.3 530,751 + -0.7 530,752 - -0.0 530,752 - -0.3 530,752 - -0.8 530,811 + -0.3 530,811 + -1.0 530,812 - -1.0 530,812 - -0.9 530,816 + -0.7 530,816 + +0.5 530,816 + +0.1 530,817 - -0.5 530,817 - -0.2 530,817 - +0.7 530,817 - +0.4 530,955 + Psest_0481 0.13 -1.6 531,662 - -0.0 531,738 + -0.9 531,746 + -1.7 531,746 + -0.9 531,746 + -1.2 531,746 + -0.0 531,746 + -1.3 531,746 + -0.0 531,747 - +0.2 531,747 - +1.0 531,747 - -0.2 531,747 - -1.9 531,747 - -0.2 531,747 - -0.6 531,802 + +0.4 531,802 + -3.3 531,803 - -0.9 531,803 - -1.2 531,820 - -0.3 531,860 + +1.0 531,860 + -2.0 531,860 + -1.7 531,860 + -1.7 531,860 + -2.3 531,860 + -1.1 531,860 + -0.4 531,860 + +1.0 531,860 + -1.5 531,861 - +0.2 531,861 - -1.7 531,861 - -2.5 531,861 - -0.8 531,861 - -1.3 531,861 - -1.5 531,861 - +0.1 531,862 + -1.7 531,862 + -4.7 531,862 + -2.2 531,862 + -0.1 531,862 + -1.1 531,862 + -0.6 531,862 + -2.6 531,862 + -1.0 531,862 + -0.0 531,862 + -1.4 531,862 + -1.6 531,862 + -2.5 531,862 - -0.5 531,863 - -2.5 531,863 - -2.3 531,863 - -2.3 531,863 - -2.3 531,863 - -1.0 531,863 - -1.6 531,863 - -1.0 531,863 - -0.0 531,863 - -1.3 531,863 - -0.8 531,863 - -0.0 531,863 - -1.9 531,863 - -1.2 531,864 + +0.8 531,864 + -2.5 531,864 + -1.0 531,864 + -2.3 531,864 + -1.0 531,864 + -0.6 531,864 + -2.3 531,864 + -1.1 531,864 + -1.5 531,864 + -2.5 531,864 + -1.6 531,864 + -1.0 531,865 - -1.5 531,865 - -1.3 531,865 - +0.2 531,865 - -1.0 531,865 - -1.3 531,865 - +0.1 531,865 - -0.9 531,865 - -2.0 531,865 - -0.7 531,865 - +1.0 531,865 - -0.8 531,865 - -1.2 531,865 - -3.0 532,056 - Psest_0482 0.37 -2.0 532,058 + Psest_0482 0.37 -0.7 532,058 + Psest_0482 0.37 +0.3 532,058 + Psest_0482 0.37 -1.6 532,142 + Psest_0482 0.51 -1.1 532,166 + Psest_0482 0.55 -1.3 532,292 + Psest_0482 0.76 -2.9 532,313 + Psest_0482 0.79 -2.4 532,313 + Psest_0482 0.79 -0.0 532,313 + Psest_0482 0.79 -1.5 532,333 + Psest_0482 0.83 -2.5 532,576 + +2.0 532,576 + -0.0 532,576 + +1.0 532,576 + -0.4 532,576 + -2.1 532,576 + -0.9 532,576 + -0.6 532,576 + +0.6 532,576 + +0.8 532,576 + -0.9
Or see this region's nucleotide sequence