Experiment: Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0473 and Psest_0474 overlap by 8 nucleotides Psest_0474 and Psest_0475 are separated by 112 nucleotides Psest_0475 and Psest_0476 are separated by 196 nucleotides
Psest_0473: Psest_0473 - Glycerol-3-phosphate dehydrogenase, at 521,763 to 522,938
_0473
Psest_0474: Psest_0474 - Membrane transporters of cations and cationic drugs, at 522,931 to 523,329
_0474
Psest_0475: Psest_0475 - 3-deoxy-D-manno-octulosonic-acid transferase, at 523,442 to 524,710
_0475
Psest_0476: Psest_0476 - type I secretion outer membrane protein, TolC family, at 524,907 to 526,361
_0476
Position (kb) 523
524
525 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 522.952 kb on - strand at 522.973 kb on - strand, within Psest_0474 at 522.973 kb on - strand, within Psest_0474 at 522.973 kb on - strand, within Psest_0474 at 522.973 kb on - strand, within Psest_0474 at 522.973 kb on - strand, within Psest_0474 at 522.974 kb on + strand, within Psest_0474 at 522.974 kb on + strand, within Psest_0474 at 522.974 kb on + strand, within Psest_0474 at 522.974 kb on + strand, within Psest_0474 at 522.974 kb on + strand, within Psest_0474 at 522.975 kb on - strand, within Psest_0474 at 522.975 kb on - strand, within Psest_0474 at 522.975 kb on - strand, within Psest_0474 at 522.975 kb on - strand, within Psest_0474 at 522.975 kb on - strand, within Psest_0474 at 522.975 kb on - strand, within Psest_0474 at 522.975 kb on - strand, within Psest_0474 at 522.975 kb on - strand, within Psest_0474 at 523.151 kb on + strand, within Psest_0474 at 523.151 kb on + strand, within Psest_0474 at 523.313 kb on + strand at 523.313 kb on + strand at 523.314 kb on - strand at 523.345 kb on - strand at 523.457 kb on + strand at 523.457 kb on + strand at 523.457 kb on + strand at 523.457 kb on + strand at 523.457 kb on + strand at 524.796 kb on + strand at 524.827 kb on + strand at 524.830 kb on + strand at 524.830 kb on + strand at 524.831 kb on - strand at 524.831 kb on - strand at 524.831 kb on - strand at 524.864 kb on + strand at 524.864 kb on + strand at 524.865 kb on - strand at 524.865 kb on - strand at 524.980 kb on + strand at 524.980 kb on + strand at 524.980 kb on + strand at 525.070 kb on + strand, within Psest_0476 at 525.070 kb on + strand, within Psest_0476 at 525.070 kb on + strand, within Psest_0476 at 525.071 kb on - strand, within Psest_0476 at 525.071 kb on - strand, within Psest_0476 at 525.071 kb on - strand, within Psest_0476 at 525.071 kb on - strand, within Psest_0476 at 525.071 kb on - strand, within Psest_0476 at 525.071 kb on - strand, within Psest_0476 at 525.091 kb on + strand, within Psest_0476 at 525.091 kb on + strand, within Psest_0476 at 525.091 kb on + strand, within Psest_0476 at 525.092 kb on - strand, within Psest_0476 at 525.092 kb on - strand, within Psest_0476 at 525.132 kb on + strand, within Psest_0476 at 525.132 kb on + strand, within Psest_0476 at 525.328 kb on + strand, within Psest_0476 at 525.331 kb on + strand, within Psest_0476 at 525.331 kb on + strand, within Psest_0476 at 525.332 kb on - strand, within Psest_0476 at 525.332 kb on - strand, within Psest_0476 at 525.370 kb on + strand, within Psest_0476 at 525.371 kb on - strand, within Psest_0476 at 525.371 kb on - strand, within Psest_0476 at 525.575 kb on - strand, within Psest_0476 at 525.691 kb on + strand, within Psest_0476 at 525.691 kb on + strand, within Psest_0476 at 525.691 kb on + strand, within Psest_0476 at 525.692 kb on - strand, within Psest_0476 at 525.692 kb on - strand, within Psest_0476
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.002 mg/ml remove 522,952 - +1.0 522,973 - Psest_0474 0.11 +1.0 522,973 - Psest_0474 0.11 -0.6 522,973 - Psest_0474 0.11 +0.0 522,973 - Psest_0474 0.11 +0.6 522,973 - Psest_0474 0.11 -0.2 522,974 + Psest_0474 0.11 -2.0 522,974 + Psest_0474 0.11 -2.0 522,974 + Psest_0474 0.11 -0.3 522,974 + Psest_0474 0.11 -0.2 522,974 + Psest_0474 0.11 -1.2 522,975 - Psest_0474 0.11 -0.2 522,975 - Psest_0474 0.11 -0.3 522,975 - Psest_0474 0.11 -1.3 522,975 - Psest_0474 0.11 +0.0 522,975 - Psest_0474 0.11 -0.9 522,975 - Psest_0474 0.11 +0.0 522,975 - Psest_0474 0.11 -0.4 522,975 - Psest_0474 0.11 +0.5 523,151 + Psest_0474 0.55 +0.0 523,151 + Psest_0474 0.55 +1.0 523,313 + +0.1 523,313 + +0.3 523,314 - +2.3 523,345 - -0.8 523,457 + -0.9 523,457 + -0.7 523,457 + +1.6 523,457 + +0.8 523,457 + +0.2 524,796 + +0.4 524,827 + +0.2 524,830 + +2.0 524,830 + +0.0 524,831 - -0.2 524,831 - -1.0 524,831 - -0.3 524,864 + +0.0 524,864 + +2.0 524,865 - -0.2 524,865 - +0.7 524,980 + -2.7 524,980 + -0.8 524,980 + -1.3 525,070 + Psest_0476 0.11 -2.9 525,070 + Psest_0476 0.11 -0.6 525,070 + Psest_0476 0.11 +0.4 525,071 - Psest_0476 0.11 -0.6 525,071 - Psest_0476 0.11 -2.7 525,071 - Psest_0476 0.11 -1.3 525,071 - Psest_0476 0.11 -3.2 525,071 - Psest_0476 0.11 -2.4 525,071 - Psest_0476 0.11 -1.2 525,091 + Psest_0476 0.13 -2.0 525,091 + Psest_0476 0.13 -3.2 525,091 + Psest_0476 0.13 -2.5 525,092 - Psest_0476 0.13 -2.5 525,092 - Psest_0476 0.13 -2.7 525,132 + Psest_0476 0.15 -3.8 525,132 + Psest_0476 0.15 -1.3 525,328 + Psest_0476 0.29 -1.8 525,331 + Psest_0476 0.29 -4.1 525,331 + Psest_0476 0.29 -2.7 525,332 - Psest_0476 0.29 -0.3 525,332 - Psest_0476 0.29 -1.0 525,370 + Psest_0476 0.32 -2.8 525,371 - Psest_0476 0.32 -3.2 525,371 - Psest_0476 0.32 -1.8 525,575 - Psest_0476 0.46 -2.2 525,691 + Psest_0476 0.54 -2.4 525,691 + Psest_0476 0.54 -2.3 525,691 + Psest_0476 0.54 -0.8 525,692 - Psest_0476 0.54 -1.8 525,692 - Psest_0476 0.54 -3.4
Or see this region's nucleotide sequence