Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0453

Experiment: Benzalkonium Chloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0452 and Psest_0453 overlap by 1 nucleotidesPsest_0453 and Psest_0454 are separated by 43 nucleotidesPsest_0454 and Psest_0455 are separated by 8 nucleotides Psest_0452: Psest_0452 - lipopolysaccharide heptosyltransferase I, at 498,209 to 499,210 _0452 Psest_0453: Psest_0453 - Glycosyltransferase, at 499,210 to 500,331 _0453 Psest_0454: Psest_0454 - Lipopolysaccharide kinase (Kdo/WaaP) family., at 500,375 to 501,181 _0454 Psest_0455: Psest_0455 - ADP-heptose:LPS heptosyltransferase, at 501,190 to 502,146 _0455 Position (kb) 499 500 501Strain fitness (log2 ratio) -3 -2 -1 0 1at 500.374 kb on + strandat 501.236 kb on + strandat 501.236 kb on + strandat 501.236 kb on + strandat 501.236 kb on + strandat 501.251 kb on + strandat 501.251 kb on + strandat 501.251 kb on + strandat 501.251 kb on + strandat 501.251 kb on + strandat 501.251 kb on + strandat 501.251 kb on + strandat 501.253 kb on + strandat 501.253 kb on + strandat 501.253 kb on + strandat 501.253 kb on + strandat 501.253 kb on + strandat 501.253 kb on + strandat 501.253 kb on + strandat 501.253 kb on + strandat 501.253 kb on + strandat 501.253 kb on + strandat 501.253 kb on + strandat 501.253 kb on + strandat 501.253 kb on + strandat 501.272 kb on + strandat 501.272 kb on + strandat 501.309 kb on + strand, within Psest_0455at 501.309 kb on + strand, within Psest_0455at 501.318 kb on + strand, within Psest_0455at 501.318 kb on + strand, within Psest_0455

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.002 mg/ml
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500,374 + -1.0
501,236 + +1.4
501,236 + -1.1
501,236 + -0.6
501,236 + -0.2
501,251 + -2.0
501,251 + -0.7
501,251 + -0.8
501,251 + -1.4
501,251 + -0.8
501,251 + -0.1
501,251 + -1.7
501,253 + -0.7
501,253 + -0.2
501,253 + -2.0
501,253 + -0.8
501,253 + -2.2
501,253 + +0.3
501,253 + -1.0
501,253 + -2.0
501,253 + -1.5
501,253 + -1.0
501,253 + -0.2
501,253 + -0.5
501,253 + +0.8
501,272 + -1.7
501,272 + -2.3
501,309 + Psest_0455 0.12 -0.7
501,309 + Psest_0455 0.12 -1.0
501,318 + Psest_0455 0.13 +0.1
501,318 + Psest_0455 0.13 -3.1

Or see this region's nucleotide sequence