Experiment: Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_4369 and Psest_4370 overlap by 4 nucleotides Psest_4370 and Psest_4371 are separated by 2 nucleotides Psest_4371 and Psest_4372 overlap by 4 nucleotides
Psest_4369: Psest_4369 - Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit, at 4,566,422 to 4,567,942
_4369
Psest_4370: Psest_4370 - Multisubunit Na+/H+ antiporter, MnhC subunit, at 4,567,939 to 4,568,322
_4370
Psest_4371: Psest_4371 - Multisubunit Na+/H+ antiporter, MnhB subunit, at 4,568,325 to 4,568,726
_4371
Psest_4372: Psest_4372 - NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit, at 4,568,723 to 4,571,032
_4372
Position (kb)
4567
4568
4569 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4566.942 kb on + strand, within Psest_4369 at 4566.942 kb on + strand, within Psest_4369 at 4566.943 kb on - strand, within Psest_4369 at 4566.943 kb on - strand, within Psest_4369 at 4566.943 kb on - strand, within Psest_4369 at 4566.943 kb on - strand, within Psest_4369 at 4566.943 kb on - strand, within Psest_4369 at 4566.943 kb on - strand, within Psest_4369 at 4566.943 kb on - strand, within Psest_4369 at 4566.943 kb on - strand, within Psest_4369 at 4566.943 kb on - strand, within Psest_4369 at 4566.943 kb on - strand, within Psest_4369 at 4567.000 kb on - strand, within Psest_4369 at 4567.000 kb on - strand, within Psest_4369 at 4567.000 kb on - strand, within Psest_4369 at 4567.000 kb on - strand, within Psest_4369 at 4567.041 kb on - strand, within Psest_4369 at 4567.168 kb on - strand, within Psest_4369 at 4567.168 kb on - strand, within Psest_4369 at 4567.168 kb on - strand, within Psest_4369 at 4567.231 kb on - strand, within Psest_4369 at 4567.231 kb on - strand, within Psest_4369 at 4567.263 kb on + strand, within Psest_4369 at 4567.295 kb on + strand, within Psest_4369 at 4567.296 kb on - strand, within Psest_4369 at 4567.296 kb on - strand, within Psest_4369 at 4567.530 kb on + strand, within Psest_4369 at 4567.530 kb on + strand, within Psest_4369 at 4567.530 kb on + strand, within Psest_4369 at 4567.530 kb on + strand, within Psest_4369 at 4567.530 kb on + strand, within Psest_4369 at 4567.530 kb on + strand, within Psest_4369 at 4567.530 kb on + strand, within Psest_4369 at 4567.530 kb on + strand, within Psest_4369 at 4567.530 kb on + strand, within Psest_4369 at 4567.530 kb on + strand, within Psest_4369 at 4567.531 kb on - strand, within Psest_4369 at 4567.531 kb on - strand, within Psest_4369 at 4567.531 kb on - strand, within Psest_4369 at 4567.817 kb on + strand at 4567.818 kb on - strand at 4567.818 kb on - strand at 4567.818 kb on - strand at 4567.954 kb on - strand at 4568.005 kb on - strand, within Psest_4370 at 4568.270 kb on + strand, within Psest_4370 at 4568.270 kb on + strand, within Psest_4370 at 4568.270 kb on + strand, within Psest_4370 at 4568.271 kb on - strand, within Psest_4370 at 4568.271 kb on - strand, within Psest_4370 at 4568.322 kb on + strand at 4568.322 kb on + strand at 4568.323 kb on - strand at 4568.383 kb on + strand, within Psest_4371 at 4568.384 kb on - strand, within Psest_4371 at 4568.384 kb on - strand, within Psest_4371 at 4568.659 kb on + strand, within Psest_4371 at 4568.660 kb on - strand, within Psest_4371 at 4568.874 kb on + strand at 4568.874 kb on + strand at 4568.875 kb on - strand at 4568.889 kb on + strand at 4568.889 kb on + strand at 4568.889 kb on + strand at 4568.890 kb on - strand at 4569.174 kb on - strand, within Psest_4372
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.002 mg/ml remove 4,566,942 + Psest_4369 0.34 -0.9 4,566,942 + Psest_4369 0.34 +0.2 4,566,943 - Psest_4369 0.34 +1.6 4,566,943 - Psest_4369 0.34 +0.3 4,566,943 - Psest_4369 0.34 -0.9 4,566,943 - Psest_4369 0.34 +0.2 4,566,943 - Psest_4369 0.34 -0.6 4,566,943 - Psest_4369 0.34 +0.2 4,566,943 - Psest_4369 0.34 -0.8 4,566,943 - Psest_4369 0.34 -1.3 4,566,943 - Psest_4369 0.34 -1.5 4,566,943 - Psest_4369 0.34 -0.0 4,567,000 - Psest_4369 0.38 -1.7 4,567,000 - Psest_4369 0.38 -0.9 4,567,000 - Psest_4369 0.38 -0.1 4,567,000 - Psest_4369 0.38 +2.7 4,567,041 - Psest_4369 0.41 -1.9 4,567,168 - Psest_4369 0.49 -1.1 4,567,168 - Psest_4369 0.49 -0.2 4,567,168 - Psest_4369 0.49 -0.0 4,567,231 - Psest_4369 0.53 +0.1 4,567,231 - Psest_4369 0.53 -0.7 4,567,263 + Psest_4369 0.55 -0.3 4,567,295 + Psest_4369 0.57 -1.1 4,567,296 - Psest_4369 0.57 +1.4 4,567,296 - Psest_4369 0.57 +0.0 4,567,530 + Psest_4369 0.73 +1.2 4,567,530 + Psest_4369 0.73 +0.1 4,567,530 + Psest_4369 0.73 -0.1 4,567,530 + Psest_4369 0.73 -0.4 4,567,530 + Psest_4369 0.73 -1.7 4,567,530 + Psest_4369 0.73 -0.9 4,567,530 + Psest_4369 0.73 -0.6 4,567,530 + Psest_4369 0.73 -0.1 4,567,530 + Psest_4369 0.73 -0.6 4,567,530 + Psest_4369 0.73 -0.6 4,567,531 - Psest_4369 0.73 -0.1 4,567,531 - Psest_4369 0.73 +0.4 4,567,531 - Psest_4369 0.73 -1.5 4,567,817 + -0.2 4,567,818 - +0.9 4,567,818 - -1.1 4,567,818 - -0.9 4,567,954 - +0.6 4,568,005 - Psest_4370 0.17 -0.8 4,568,270 + Psest_4370 0.86 -0.7 4,568,270 + Psest_4370 0.86 -1.7 4,568,270 + Psest_4370 0.86 -0.7 4,568,271 - Psest_4370 0.86 -0.9 4,568,271 - Psest_4370 0.86 -0.5 4,568,322 + -0.5 4,568,322 + -0.9 4,568,323 - -0.5 4,568,383 + Psest_4371 0.14 -1.3 4,568,384 - Psest_4371 0.15 -1.8 4,568,384 - Psest_4371 0.15 -0.9 4,568,659 + Psest_4371 0.83 -1.4 4,568,660 - Psest_4371 0.83 -1.5 4,568,874 + -2.0 4,568,874 + +0.9 4,568,875 - +0.5 4,568,889 + +0.2 4,568,889 + +1.2 4,568,889 + -1.7 4,568,890 - -0.2 4,569,174 - Psest_4372 0.20 -0.1
Or see this region's nucleotide sequence