Experiment: Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3729 and Psest_3730 are separated by 231 nucleotides Psest_3730 and Psest_3731 are separated by 183 nucleotides Psest_3731 and Psest_3732 are separated by 105 nucleotides
Psest_3729: Psest_3729 - transcription termination factor Rho, at 3,900,545 to 3,901,804
_3729
Psest_3730: Psest_3730 - thioredoxin, at 3,902,036 to 3,902,362
_3730
Psest_3731: Psest_3731 - exopolyphosphatase, at 3,902,546 to 3,904,048
_3731
Psest_3732: Psest_3732 - polyphosphate kinase 1, at 3,904,154 to 3,906,370
_3732
Position (kb)
3902
3903
3904
3905 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3901.826 kb on - strand at 3901.826 kb on - strand at 3901.826 kb on - strand at 3901.826 kb on - strand at 3901.837 kb on - strand at 3901.884 kb on - strand at 3902.401 kb on + strand at 3902.402 kb on - strand at 3902.402 kb on - strand at 3902.402 kb on - strand at 3902.402 kb on - strand at 3902.407 kb on + strand at 3902.614 kb on + strand at 3902.614 kb on + strand at 3902.614 kb on + strand at 3902.614 kb on + strand at 3902.614 kb on + strand at 3902.614 kb on + strand at 3902.614 kb on + strand at 3902.615 kb on - strand at 3902.615 kb on - strand at 3902.615 kb on - strand at 3902.615 kb on - strand at 3902.615 kb on - strand at 3902.615 kb on - strand at 3902.918 kb on + strand, within Psest_3731 at 3902.918 kb on + strand, within Psest_3731 at 3902.919 kb on - strand, within Psest_3731 at 3902.919 kb on - strand, within Psest_3731 at 3902.919 kb on - strand, within Psest_3731 at 3903.059 kb on + strand, within Psest_3731 at 3903.059 kb on + strand, within Psest_3731 at 3903.060 kb on - strand, within Psest_3731 at 3903.060 kb on - strand, within Psest_3731 at 3903.060 kb on - strand, within Psest_3731 at 3903.116 kb on + strand, within Psest_3731 at 3903.116 kb on + strand, within Psest_3731 at 3903.116 kb on + strand, within Psest_3731 at 3903.116 kb on + strand, within Psest_3731 at 3903.117 kb on - strand, within Psest_3731 at 3903.117 kb on - strand, within Psest_3731 at 3903.117 kb on - strand, within Psest_3731 at 3903.117 kb on - strand, within Psest_3731 at 3903.117 kb on - strand, within Psest_3731 at 3903.117 kb on - strand, within Psest_3731 at 3903.117 kb on - strand, within Psest_3731 at 3903.117 kb on - strand, within Psest_3731 at 3903.184 kb on + strand, within Psest_3731 at 3903.184 kb on + strand, within Psest_3731 at 3903.184 kb on + strand, within Psest_3731 at 3903.184 kb on + strand, within Psest_3731 at 3903.184 kb on + strand, within Psest_3731 at 3903.184 kb on + strand, within Psest_3731 at 3903.185 kb on - strand, within Psest_3731 at 3903.185 kb on - strand, within Psest_3731 at 3903.185 kb on - strand, within Psest_3731 at 3903.185 kb on - strand, within Psest_3731 at 3903.185 kb on - strand, within Psest_3731 at 3903.185 kb on - strand, within Psest_3731 at 3903.355 kb on - strand, within Psest_3731 at 3903.452 kb on + strand, within Psest_3731 at 3903.453 kb on - strand, within Psest_3731 at 3903.521 kb on + strand, within Psest_3731 at 3903.677 kb on + strand, within Psest_3731 at 3903.677 kb on + strand, within Psest_3731 at 3903.677 kb on + strand, within Psest_3731 at 3903.677 kb on + strand, within Psest_3731 at 3903.678 kb on - strand, within Psest_3731 at 3903.678 kb on - strand, within Psest_3731 at 3903.678 kb on - strand, within Psest_3731 at 3903.678 kb on - strand, within Psest_3731 at 3903.684 kb on - strand, within Psest_3731 at 3903.788 kb on - strand, within Psest_3731 at 3903.788 kb on - strand, within Psest_3731 at 3903.799 kb on + strand, within Psest_3731 at 3903.799 kb on + strand, within Psest_3731 at 3903.799 kb on + strand, within Psest_3731 at 3903.800 kb on - strand, within Psest_3731 at 3903.909 kb on + strand at 3903.910 kb on - strand at 3904.029 kb on - strand at 3904.248 kb on + strand at 3904.407 kb on + strand, within Psest_3732 at 3904.407 kb on + strand, within Psest_3732 at 3904.408 kb on - strand, within Psest_3732 at 3904.437 kb on + strand, within Psest_3732 at 3904.437 kb on + strand, within Psest_3732 at 3904.438 kb on - strand, within Psest_3732 at 3904.578 kb on + strand, within Psest_3732 at 3904.579 kb on - strand, within Psest_3732 at 3904.579 kb on - strand, within Psest_3732 at 3904.579 kb on - strand, within Psest_3732 at 3904.630 kb on + strand, within Psest_3732 at 3904.631 kb on - strand, within Psest_3732 at 3904.816 kb on - strand, within Psest_3732 at 3904.824 kb on + strand, within Psest_3732 at 3904.824 kb on + strand, within Psest_3732 at 3904.824 kb on + strand, within Psest_3732 at 3904.848 kb on + strand, within Psest_3732 at 3904.849 kb on - strand, within Psest_3732 at 3904.947 kb on + strand, within Psest_3732 at 3904.947 kb on + strand, within Psest_3732 at 3904.948 kb on - strand, within Psest_3732 at 3904.948 kb on - strand, within Psest_3732 at 3904.948 kb on - strand, within Psest_3732
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.002 mg/ml remove 3,901,826 - +0.0 3,901,826 - -1.7 3,901,826 - -2.0 3,901,826 - -2.9 3,901,837 - -1.0 3,901,884 - -1.8 3,902,401 + +2.5 3,902,402 - -0.2 3,902,402 - -0.4 3,902,402 - +0.2 3,902,402 - -0.8 3,902,407 + +1.4 3,902,614 + -0.8 3,902,614 + -1.3 3,902,614 + -2.6 3,902,614 + -1.1 3,902,614 + -0.3 3,902,614 + -0.4 3,902,614 + -1.6 3,902,615 - -0.8 3,902,615 - -0.7 3,902,615 - -1.1 3,902,615 - -0.5 3,902,615 - +0.7 3,902,615 - +1.2 3,902,918 + Psest_3731 0.25 -1.2 3,902,918 + Psest_3731 0.25 -2.7 3,902,919 - Psest_3731 0.25 -0.7 3,902,919 - Psest_3731 0.25 -4.4 3,902,919 - Psest_3731 0.25 -1.6 3,903,059 + Psest_3731 0.34 -0.8 3,903,059 + Psest_3731 0.34 -2.0 3,903,060 - Psest_3731 0.34 -1.1 3,903,060 - Psest_3731 0.34 -1.8 3,903,060 - Psest_3731 0.34 -1.4 3,903,116 + Psest_3731 0.38 -1.1 3,903,116 + Psest_3731 0.38 -0.3 3,903,116 + Psest_3731 0.38 -1.9 3,903,116 + Psest_3731 0.38 -0.5 3,903,117 - Psest_3731 0.38 -1.4 3,903,117 - Psest_3731 0.38 -1.0 3,903,117 - Psest_3731 0.38 -1.5 3,903,117 - Psest_3731 0.38 -0.9 3,903,117 - Psest_3731 0.38 -0.2 3,903,117 - Psest_3731 0.38 -1.1 3,903,117 - Psest_3731 0.38 -1.6 3,903,117 - Psest_3731 0.38 -0.4 3,903,184 + Psest_3731 0.42 -1.7 3,903,184 + Psest_3731 0.42 -1.7 3,903,184 + Psest_3731 0.42 -1.6 3,903,184 + Psest_3731 0.42 -2.2 3,903,184 + Psest_3731 0.42 -1.6 3,903,184 + Psest_3731 0.42 -0.2 3,903,185 - Psest_3731 0.43 -1.4 3,903,185 - Psest_3731 0.43 -2.3 3,903,185 - Psest_3731 0.43 -1.5 3,903,185 - Psest_3731 0.43 -1.5 3,903,185 - Psest_3731 0.43 -0.1 3,903,185 - Psest_3731 0.43 -3.6 3,903,355 - Psest_3731 0.54 -0.4 3,903,452 + Psest_3731 0.60 -0.9 3,903,453 - Psest_3731 0.60 -2.6 3,903,521 + Psest_3731 0.65 -0.2 3,903,677 + Psest_3731 0.75 -0.6 3,903,677 + Psest_3731 0.75 -2.2 3,903,677 + Psest_3731 0.75 -3.6 3,903,677 + Psest_3731 0.75 -0.9 3,903,678 - Psest_3731 0.75 -1.8 3,903,678 - Psest_3731 0.75 -2.2 3,903,678 - Psest_3731 0.75 -1.3 3,903,678 - Psest_3731 0.75 -4.6 3,903,684 - Psest_3731 0.76 -0.2 3,903,788 - Psest_3731 0.83 -2.2 3,903,788 - Psest_3731 0.83 -0.8 3,903,799 + Psest_3731 0.83 -1.7 3,903,799 + Psest_3731 0.83 -0.9 3,903,799 + Psest_3731 0.83 -0.8 3,903,800 - Psest_3731 0.83 -1.5 3,903,909 + +1.5 3,903,910 - -1.7 3,904,029 - -1.4 3,904,248 + -2.0 3,904,407 + Psest_3732 0.11 -1.3 3,904,407 + Psest_3732 0.11 -0.6 3,904,408 - Psest_3732 0.11 -1.7 3,904,437 + Psest_3732 0.13 -1.0 3,904,437 + Psest_3732 0.13 -1.0 3,904,438 - Psest_3732 0.13 -1.6 3,904,578 + Psest_3732 0.19 -1.7 3,904,579 - Psest_3732 0.19 -2.7 3,904,579 - Psest_3732 0.19 -2.6 3,904,579 - Psest_3732 0.19 -2.8 3,904,630 + Psest_3732 0.21 -1.6 3,904,631 - Psest_3732 0.22 -2.2 3,904,816 - Psest_3732 0.30 -2.8 3,904,824 + Psest_3732 0.30 -1.4 3,904,824 + Psest_3732 0.30 -1.0 3,904,824 + Psest_3732 0.30 -2.7 3,904,848 + Psest_3732 0.31 -1.0 3,904,849 - Psest_3732 0.31 -0.9 3,904,947 + Psest_3732 0.36 +0.0 3,904,947 + Psest_3732 0.36 -1.4 3,904,948 - Psest_3732 0.36 -2.8 3,904,948 - Psest_3732 0.36 -1.8 3,904,948 - Psest_3732 0.36 +0.2
Or see this region's nucleotide sequence