Experiment: Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3538 and Psest_3539 are separated by 10 nucleotides Psest_3539 and Psest_3540 overlap by 4 nucleotides
Psest_3538: Psest_3538 - hypothetical protein, at 3,715,233 to 3,716,282
_3538
Psest_3539: Psest_3539 - exonuclease SbcD, at 3,716,293 to 3,717,528
_3539
Psest_3540: Psest_3540 - hypothetical protein, at 3,717,525 to 3,721,178
_3540
Position (kb)
3716
3717
3718 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3715.299 kb on + strand at 3715.328 kb on + strand at 3715.328 kb on + strand at 3715.328 kb on + strand at 3715.328 kb on + strand at 3715.328 kb on + strand at 3715.329 kb on - strand at 3715.329 kb on - strand at 3715.385 kb on + strand, within Psest_3538 at 3715.470 kb on - strand, within Psest_3538 at 3715.470 kb on - strand, within Psest_3538 at 3715.470 kb on - strand, within Psest_3538 at 3715.756 kb on + strand, within Psest_3538 at 3715.757 kb on - strand, within Psest_3538 at 3715.757 kb on - strand, within Psest_3538 at 3715.780 kb on + strand, within Psest_3538 at 3715.780 kb on + strand, within Psest_3538 at 3715.780 kb on + strand, within Psest_3538 at 3715.780 kb on + strand, within Psest_3538 at 3715.781 kb on - strand, within Psest_3538 at 3715.781 kb on - strand, within Psest_3538 at 3715.781 kb on - strand, within Psest_3538 at 3715.781 kb on - strand, within Psest_3538 at 3715.781 kb on - strand, within Psest_3538 at 3715.868 kb on + strand, within Psest_3538 at 3715.868 kb on + strand, within Psest_3538 at 3715.868 kb on + strand, within Psest_3538 at 3715.868 kb on + strand, within Psest_3538 at 3715.868 kb on + strand, within Psest_3538 at 3715.869 kb on - strand, within Psest_3538 at 3716.130 kb on - strand, within Psest_3538 at 3716.179 kb on + strand at 3716.179 kb on + strand at 3716.180 kb on - strand at 3716.180 kb on - strand at 3716.180 kb on - strand at 3716.215 kb on + strand at 3716.215 kb on + strand at 3716.215 kb on + strand at 3716.215 kb on + strand at 3716.215 kb on + strand at 3716.216 kb on - strand at 3716.216 kb on - strand at 3716.216 kb on - strand at 3716.216 kb on - strand at 3716.216 kb on - strand at 3716.216 kb on - strand at 3716.216 kb on - strand at 3716.216 kb on - strand at 3716.216 kb on - strand at 3716.216 kb on - strand at 3716.216 kb on - strand at 3716.620 kb on - strand, within Psest_3539 at 3716.764 kb on + strand, within Psest_3539 at 3716.764 kb on + strand, within Psest_3539 at 3716.764 kb on + strand, within Psest_3539 at 3716.764 kb on + strand, within Psest_3539 at 3716.764 kb on + strand, within Psest_3539 at 3716.764 kb on + strand, within Psest_3539 at 3716.765 kb on - strand, within Psest_3539 at 3716.765 kb on - strand, within Psest_3539 at 3716.765 kb on - strand, within Psest_3539 at 3716.765 kb on - strand, within Psest_3539 at 3716.765 kb on - strand, within Psest_3539 at 3716.765 kb on - strand, within Psest_3539 at 3716.765 kb on - strand, within Psest_3539 at 3716.765 kb on - strand, within Psest_3539 at 3716.765 kb on - strand, within Psest_3539 at 3716.765 kb on - strand, within Psest_3539 at 3716.765 kb on - strand, within Psest_3539 at 3716.959 kb on + strand, within Psest_3539 at 3716.960 kb on - strand, within Psest_3539 at 3716.960 kb on - strand, within Psest_3539 at 3716.960 kb on - strand, within Psest_3539 at 3717.245 kb on + strand, within Psest_3539 at 3717.246 kb on - strand, within Psest_3539 at 3717.377 kb on + strand, within Psest_3539 at 3717.377 kb on + strand, within Psest_3539 at 3717.378 kb on - strand, within Psest_3539 at 3717.378 kb on - strand, within Psest_3539 at 3717.378 kb on - strand, within Psest_3539 at 3717.378 kb on - strand, within Psest_3539 at 3717.378 kb on - strand, within Psest_3539 at 3717.378 kb on - strand, within Psest_3539 at 3718.117 kb on - strand, within Psest_3540 at 3718.231 kb on + strand, within Psest_3540 at 3718.231 kb on + strand, within Psest_3540 at 3718.231 kb on + strand, within Psest_3540 at 3718.232 kb on - strand, within Psest_3540 at 3718.232 kb on - strand, within Psest_3540
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.002 mg/ml remove 3,715,299 + -0.6 3,715,328 + +0.8 3,715,328 + -0.4 3,715,328 + -1.6 3,715,328 + +1.2 3,715,328 + +1.0 3,715,329 - -0.7 3,715,329 - -1.6 3,715,385 + Psest_3538 0.14 +0.6 3,715,470 - Psest_3538 0.23 -0.6 3,715,470 - Psest_3538 0.23 -0.2 3,715,470 - Psest_3538 0.23 -0.8 3,715,756 + Psest_3538 0.50 -0.4 3,715,757 - Psest_3538 0.50 +1.0 3,715,757 - Psest_3538 0.50 +1.3 3,715,780 + Psest_3538 0.52 -1.4 3,715,780 + Psest_3538 0.52 +1.0 3,715,780 + Psest_3538 0.52 +0.8 3,715,780 + Psest_3538 0.52 -1.2 3,715,781 - Psest_3538 0.52 -1.0 3,715,781 - Psest_3538 0.52 +1.1 3,715,781 - Psest_3538 0.52 +0.7 3,715,781 - Psest_3538 0.52 +0.9 3,715,781 - Psest_3538 0.52 -0.3 3,715,868 + Psest_3538 0.60 -0.1 3,715,868 + Psest_3538 0.60 -0.6 3,715,868 + Psest_3538 0.60 +0.0 3,715,868 + Psest_3538 0.60 +1.6 3,715,868 + Psest_3538 0.60 -1.0 3,715,869 - Psest_3538 0.61 -0.3 3,716,130 - Psest_3538 0.85 +1.1 3,716,179 + +1.0 3,716,179 + -1.3 3,716,180 - -0.4 3,716,180 - -0.1 3,716,180 - +0.5 3,716,215 + -0.6 3,716,215 + -1.7 3,716,215 + -0.2 3,716,215 + -0.8 3,716,215 + -0.2 3,716,216 - +1.1 3,716,216 - +1.0 3,716,216 - +0.6 3,716,216 - +0.0 3,716,216 - -0.2 3,716,216 - -0.4 3,716,216 - +0.8 3,716,216 - +0.4 3,716,216 - +0.2 3,716,216 - +0.7 3,716,216 - +1.0 3,716,620 - Psest_3539 0.26 -0.6 3,716,764 + Psest_3539 0.38 +0.9 3,716,764 + Psest_3539 0.38 +0.0 3,716,764 + Psest_3539 0.38 +0.3 3,716,764 + Psest_3539 0.38 +1.1 3,716,764 + Psest_3539 0.38 -1.3 3,716,764 + Psest_3539 0.38 -0.1 3,716,765 - Psest_3539 0.38 -1.8 3,716,765 - Psest_3539 0.38 +0.9 3,716,765 - Psest_3539 0.38 +0.9 3,716,765 - Psest_3539 0.38 +2.0 3,716,765 - Psest_3539 0.38 +0.0 3,716,765 - Psest_3539 0.38 +0.9 3,716,765 - Psest_3539 0.38 +1.0 3,716,765 - Psest_3539 0.38 +0.6 3,716,765 - Psest_3539 0.38 -0.2 3,716,765 - Psest_3539 0.38 +0.2 3,716,765 - Psest_3539 0.38 +0.4 3,716,959 + Psest_3539 0.54 -0.8 3,716,960 - Psest_3539 0.54 +1.1 3,716,960 - Psest_3539 0.54 +0.9 3,716,960 - Psest_3539 0.54 +0.3 3,717,245 + Psest_3539 0.77 -1.0 3,717,246 - Psest_3539 0.77 -0.6 3,717,377 + Psest_3539 0.88 -0.3 3,717,377 + Psest_3539 0.88 -2.1 3,717,378 - Psest_3539 0.88 -0.6 3,717,378 - Psest_3539 0.88 -0.3 3,717,378 - Psest_3539 0.88 +1.0 3,717,378 - Psest_3539 0.88 +0.0 3,717,378 - Psest_3539 0.88 -1.1 3,717,378 - Psest_3539 0.88 +0.4 3,718,117 - Psest_3540 0.16 +0.0 3,718,231 + Psest_3540 0.19 +1.4 3,718,231 + Psest_3540 0.19 -0.6 3,718,231 + Psest_3540 0.19 -0.6 3,718,232 - Psest_3540 0.19 +0.4 3,718,232 - Psest_3540 0.19 -1.0
Or see this region's nucleotide sequence