Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2922

Experiment: Benzalkonium Chloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2921 and Psest_2922 are separated by 17 nucleotidesPsest_2922 and Psest_2923 are separated by 48 nucleotidesPsest_2923 and Psest_2924 are separated by 9 nucleotides Psest_2921: Psest_2921 - hypothetical protein, at 3,112,611 to 3,113,474 _2921 Psest_2922: Psest_2922 - Lhr-like helicases, at 3,113,492 to 3,117,919 _2922 Psest_2923: Psest_2923 - hypothetical protein, at 3,117,968 to 3,118,273 _2923 Psest_2924: Psest_2924 - Short-chain alcohol dehydrogenase of unknown specificity, at 3,118,283 to 3,118,981 _2924 Position (kb) 3113 3114 3115 3116 3117 3118Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3112.579 kb on - strandat 3112.579 kb on - strandat 3112.633 kb on + strandat 3112.826 kb on - strand, within Psest_2921at 3112.899 kb on + strand, within Psest_2921at 3113.043 kb on + strand, within Psest_2921at 3113.043 kb on + strand, within Psest_2921at 3113.043 kb on + strand, within Psest_2921at 3113.044 kb on - strand, within Psest_2921at 3113.110 kb on - strand, within Psest_2921at 3113.150 kb on - strand, within Psest_2921at 3113.375 kb on + strand, within Psest_2921at 3113.375 kb on + strand, within Psest_2921at 3113.375 kb on + strand, within Psest_2921at 3113.375 kb on + strand, within Psest_2921at 3113.375 kb on + strand, within Psest_2921at 3113.375 kb on + strand, within Psest_2921at 3113.376 kb on - strand, within Psest_2921at 3113.376 kb on - strand, within Psest_2921at 3113.376 kb on - strand, within Psest_2921at 3113.376 kb on - strand, within Psest_2921at 3113.376 kb on - strand, within Psest_2921at 3113.376 kb on - strand, within Psest_2921at 3113.607 kb on + strandat 3113.832 kb on + strandat 3113.832 kb on + strandat 3113.832 kb on + strandat 3113.832 kb on + strandat 3113.833 kb on - strandat 3113.922 kb on - strandat 3114.644 kb on - strand, within Psest_2922at 3114.644 kb on - strand, within Psest_2922at 3114.644 kb on - strand, within Psest_2922at 3114.644 kb on - strand, within Psest_2922at 3114.644 kb on - strand, within Psest_2922at 3114.726 kb on + strand, within Psest_2922at 3114.726 kb on + strand, within Psest_2922at 3114.726 kb on + strand, within Psest_2922at 3114.727 kb on - strand, within Psest_2922at 3114.727 kb on - strand, within Psest_2922at 3114.727 kb on - strand, within Psest_2922at 3114.727 kb on - strand, within Psest_2922at 3115.605 kb on - strand, within Psest_2922at 3115.671 kb on + strand, within Psest_2922at 3116.337 kb on + strand, within Psest_2922at 3116.338 kb on - strand, within Psest_2922at 3116.338 kb on - strand, within Psest_2922at 3116.416 kb on + strand, within Psest_2922at 3116.436 kb on + strand, within Psest_2922at 3116.466 kb on + strand, within Psest_2922at 3116.467 kb on - strand, within Psest_2922at 3116.467 kb on - strand, within Psest_2922at 3117.060 kb on + strand, within Psest_2922at 3117.389 kb on + strand, within Psest_2922at 3117.389 kb on + strand, within Psest_2922at 3117.390 kb on - strand, within Psest_2922at 3117.390 kb on - strand, within Psest_2922at 3117.390 kb on - strand, within Psest_2922at 3117.390 kb on - strand, within Psest_2922at 3117.393 kb on + strand, within Psest_2922at 3117.393 kb on + strand, within Psest_2922at 3117.393 kb on + strand, within Psest_2922at 3117.393 kb on + strand, within Psest_2922at 3117.393 kb on + strand, within Psest_2922at 3117.394 kb on - strand, within Psest_2922at 3117.394 kb on - strand, within Psest_2922at 3117.394 kb on - strand, within Psest_2922at 3117.409 kb on + strand, within Psest_2922at 3117.562 kb on + strandat 3117.562 kb on + strandat 3117.600 kb on + strandat 3117.600 kb on + strandat 3117.601 kb on - strandat 3117.860 kb on + strandat 3117.861 kb on - strandat 3117.861 kb on - strandat 3117.861 kb on - strandat 3117.924 kb on + strandat 3117.924 kb on + strandat 3117.924 kb on + strandat 3117.924 kb on + strandat 3117.924 kb on + strandat 3117.924 kb on + strandat 3117.924 kb on + strandat 3117.924 kb on + strandat 3117.924 kb on + strandat 3117.925 kb on - strandat 3117.925 kb on - strandat 3117.925 kb on - strandat 3117.925 kb on - strandat 3117.925 kb on - strandat 3118.066 kb on + strand, within Psest_2923at 3118.066 kb on + strand, within Psest_2923at 3118.268 kb on + strandat 3118.509 kb on - strand, within Psest_2924at 3118.529 kb on + strand, within Psest_2924at 3118.530 kb on - strand, within Psest_2924at 3118.727 kb on + strand, within Psest_2924at 3118.727 kb on + strand, within Psest_2924at 3118.727 kb on + strand, within Psest_2924at 3118.859 kb on + strand, within Psest_2924at 3118.860 kb on - strand, within Psest_2924at 3118.898 kb on + strand, within Psest_2924at 3118.898 kb on + strand, within Psest_2924

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.002 mg/ml
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3,112,579 - +1.2
3,112,579 - +0.0
3,112,633 + +0.2
3,112,826 - Psest_2921 0.25 -1.8
3,112,899 + Psest_2921 0.33 +1.2
3,113,043 + Psest_2921 0.50 -0.3
3,113,043 + Psest_2921 0.50 +2.8
3,113,043 + Psest_2921 0.50 +0.2
3,113,044 - Psest_2921 0.50 -1.1
3,113,110 - Psest_2921 0.58 +1.2
3,113,150 - Psest_2921 0.62 -0.2
3,113,375 + Psest_2921 0.88 +3.2
3,113,375 + Psest_2921 0.88 +0.4
3,113,375 + Psest_2921 0.88 -1.1
3,113,375 + Psest_2921 0.88 -1.9
3,113,375 + Psest_2921 0.88 -0.3
3,113,375 + Psest_2921 0.88 +1.2
3,113,376 - Psest_2921 0.89 +2.2
3,113,376 - Psest_2921 0.89 +0.2
3,113,376 - Psest_2921 0.89 +0.0
3,113,376 - Psest_2921 0.89 +0.5
3,113,376 - Psest_2921 0.89 +0.2
3,113,376 - Psest_2921 0.89 +0.5
3,113,607 + +0.2
3,113,832 + +2.2
3,113,832 + -0.3
3,113,832 + -0.3
3,113,832 + +2.2
3,113,833 - +1.7
3,113,922 - -0.5
3,114,644 - Psest_2922 0.26 -0.8
3,114,644 - Psest_2922 0.26 +2.2
3,114,644 - Psest_2922 0.26 -0.2
3,114,644 - Psest_2922 0.26 +1.8
3,114,644 - Psest_2922 0.26 +1.2
3,114,726 + Psest_2922 0.28 +1.2
3,114,726 + Psest_2922 0.28 +1.2
3,114,726 + Psest_2922 0.28 -0.2
3,114,727 - Psest_2922 0.28 +1.2
3,114,727 - Psest_2922 0.28 +1.2
3,114,727 - Psest_2922 0.28 -0.3
3,114,727 - Psest_2922 0.28 +0.2
3,115,605 - Psest_2922 0.48 +2.4
3,115,671 + Psest_2922 0.49 +0.2
3,116,337 + Psest_2922 0.64 -0.3
3,116,338 - Psest_2922 0.64 -0.8
3,116,338 - Psest_2922 0.64 +0.2
3,116,416 + Psest_2922 0.66 +0.8
3,116,436 + Psest_2922 0.66 -0.8
3,116,466 + Psest_2922 0.67 +0.2
3,116,467 - Psest_2922 0.67 +0.2
3,116,467 - Psest_2922 0.67 +1.8
3,117,060 + Psest_2922 0.81 -0.6
3,117,389 + Psest_2922 0.88 -1.3
3,117,389 + Psest_2922 0.88 -0.8
3,117,390 - Psest_2922 0.88 -0.3
3,117,390 - Psest_2922 0.88 +1.2
3,117,390 - Psest_2922 0.88 +3.8
3,117,390 - Psest_2922 0.88 +2.2
3,117,393 + Psest_2922 0.88 +0.8
3,117,393 + Psest_2922 0.88 +1.8
3,117,393 + Psest_2922 0.88 +1.7
3,117,393 + Psest_2922 0.88 +1.7
3,117,393 + Psest_2922 0.88 +0.2
3,117,394 - Psest_2922 0.88 -0.2
3,117,394 - Psest_2922 0.88 +1.2
3,117,394 - Psest_2922 0.88 +0.2
3,117,409 + Psest_2922 0.88 +0.7
3,117,562 + -0.3
3,117,562 + +0.9
3,117,600 + +0.8
3,117,600 + +1.8
3,117,601 - +0.2
3,117,860 + +0.6
3,117,861 - -1.3
3,117,861 - +1.2
3,117,861 - +1.8
3,117,924 + +1.2
3,117,924 + -1.3
3,117,924 + +2.1
3,117,924 + +0.8
3,117,924 + -1.8
3,117,924 + -1.1
3,117,924 + -0.3
3,117,924 + +0.2
3,117,924 + +1.2
3,117,925 - +0.2
3,117,925 - -0.2
3,117,925 - -0.3
3,117,925 - -0.3
3,117,925 - -0.3
3,118,066 + Psest_2923 0.32 -0.2
3,118,066 + Psest_2923 0.32 -1.6
3,118,268 + +0.1
3,118,509 - Psest_2924 0.32 +3.2
3,118,529 + Psest_2924 0.35 -0.8
3,118,530 - Psest_2924 0.35 -0.1
3,118,727 + Psest_2924 0.64 -0.3
3,118,727 + Psest_2924 0.64 +1.1
3,118,727 + Psest_2924 0.64 -0.2
3,118,859 + Psest_2924 0.82 +0.3
3,118,860 - Psest_2924 0.83 +1.3
3,118,898 + Psest_2924 0.88 -0.0
3,118,898 + Psest_2924 0.88 -0.1

Or see this region's nucleotide sequence