Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2808

Experiment: Benzalkonium Chloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2806 and Psest_2807 are separated by 100 nucleotidesPsest_2807 and Psest_2808 are separated by 28 nucleotidesPsest_2808 and Psest_2809 are separated by 19 nucleotidesPsest_2809 and Psest_2810 overlap by 4 nucleotides Psest_2806: Psest_2806 - RNA polymerase sigma factor RpoS, at 2,995,498 to 2,996,493 _2806 Psest_2807: Psest_2807 - Membrane proteins related to metalloendopeptidases, at 2,996,594 to 2,997,448 _2807 Psest_2808: Psest_2808 - Predicted membrane protein, at 2,997,477 to 2,998,412 _2808 Psest_2809: Psest_2809 - protein-L-isoaspartate(D-aspartate) O-methyltransferase, at 2,998,432 to 2,999,109 _2809 Psest_2810: Psest_2810 - 5'/3'-nucleotidase SurE, at 2,999,106 to 2,999,855 _2810 Position (kb) 2997 2998 2999Strain fitness (log2 ratio) -3 -2 -1 0 1at 2996.484 kb on + strandat 2996.484 kb on + strandat 2996.485 kb on - strandat 2996.485 kb on - strandat 2996.496 kb on + strandat 2996.497 kb on - strandat 2996.568 kb on + strandat 2996.569 kb on - strandat 2996.569 kb on - strandat 2996.569 kb on - strandat 2996.569 kb on - strandat 2996.569 kb on - strandat 2997.466 kb on - strandat 2997.473 kb on + strandat 2997.474 kb on - strandat 2997.474 kb on - strandat 2997.474 kb on - strandat 2997.474 kb on - strandat 2997.474 kb on - strandat 2997.474 kb on - strandat 2998.469 kb on - strandat 2998.638 kb on - strand, within Psest_2809at 2998.893 kb on + strand, within Psest_2809at 2998.893 kb on + strand, within Psest_2809at 2998.931 kb on + strand, within Psest_2809at 2998.931 kb on + strand, within Psest_2809at 2999.035 kb on + strand, within Psest_2809at 2999.035 kb on + strand, within Psest_2809at 2999.036 kb on - strand, within Psest_2809at 2999.188 kb on - strand, within Psest_2810at 2999.188 kb on - strand, within Psest_2810at 2999.191 kb on + strand, within Psest_2810at 2999.191 kb on + strand, within Psest_2810at 2999.192 kb on - strand, within Psest_2810at 2999.264 kb on - strand, within Psest_2810at 2999.393 kb on + strand, within Psest_2810at 2999.393 kb on + strand, within Psest_2810at 2999.393 kb on + strand, within Psest_2810

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.002 mg/ml
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2,996,484 + -1.2
2,996,484 + -0.5
2,996,485 - -2.1
2,996,485 - -0.9
2,996,496 + +0.8
2,996,497 - -1.9
2,996,568 + -1.4
2,996,569 - -2.2
2,996,569 - -1.4
2,996,569 - -0.5
2,996,569 - +0.2
2,996,569 - -2.9
2,997,466 - +0.6
2,997,473 + -2.4
2,997,474 - +1.0
2,997,474 - -1.4
2,997,474 - -1.3
2,997,474 - +0.2
2,997,474 - +0.4
2,997,474 - +1.1
2,998,469 - -0.4
2,998,638 - Psest_2809 0.30 -1.9
2,998,893 + Psest_2809 0.68 +0.1
2,998,893 + Psest_2809 0.68 -1.8
2,998,931 + Psest_2809 0.74 -1.9
2,998,931 + Psest_2809 0.74 -1.1
2,999,035 + Psest_2809 0.89 -1.4
2,999,035 + Psest_2809 0.89 -1.4
2,999,036 - Psest_2809 0.89 -0.6
2,999,188 - Psest_2810 0.11 -1.4
2,999,188 - Psest_2810 0.11 -1.7
2,999,191 + Psest_2810 0.11 -2.0
2,999,191 + Psest_2810 0.11 -1.1
2,999,192 - Psest_2810 0.11 -1.4
2,999,264 - Psest_2810 0.21 +0.0
2,999,393 + Psest_2810 0.38 -1.7
2,999,393 + Psest_2810 0.38 -0.2
2,999,393 + Psest_2810 0.38 -3.4

Or see this region's nucleotide sequence