Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2563

Experiment: Benzalkonium Chloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2562 and Psest_2563 are separated by 49 nucleotidesPsest_2563 and Psest_2564 overlap by 4 nucleotidesPsest_2564 and Psest_2565 are separated by 101 nucleotides Psest_2562: Psest_2562 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 2,743,205 to 2,745,541 _2562 Psest_2563: Psest_2563 - Arabinose efflux permease, at 2,745,591 to 2,746,826 _2563 Psest_2564: Psest_2564 - NAD(P)H:quinone oxidoreductase, type IV, at 2,746,823 to 2,747,449 _2564 Psest_2565: Psest_2565 - Transcriptional regulator, at 2,747,551 to 2,748,459 _2565 Position (kb) 2745 2746 2747Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2744.617 kb on + strand, within Psest_2562at 2744.638 kb on - strand, within Psest_2562at 2744.718 kb on + strand, within Psest_2562at 2744.718 kb on + strand, within Psest_2562at 2744.718 kb on + strand, within Psest_2562at 2744.719 kb on - strand, within Psest_2562at 2744.719 kb on - strand, within Psest_2562at 2744.719 kb on - strand, within Psest_2562at 2744.719 kb on - strand, within Psest_2562at 2744.779 kb on - strand, within Psest_2562at 2744.779 kb on - strand, within Psest_2562at 2744.779 kb on - strand, within Psest_2562at 2744.779 kb on - strand, within Psest_2562at 2744.779 kb on - strand, within Psest_2562at 2745.121 kb on + strand, within Psest_2562at 2745.121 kb on + strand, within Psest_2562at 2745.122 kb on - strand, within Psest_2562at 2745.122 kb on - strand, within Psest_2562at 2745.847 kb on - strand, within Psest_2563at 2746.103 kb on - strand, within Psest_2563at 2746.115 kb on + strand, within Psest_2563at 2746.115 kb on + strand, within Psest_2563at 2746.115 kb on + strand, within Psest_2563at 2746.115 kb on + strand, within Psest_2563at 2746.115 kb on + strand, within Psest_2563at 2746.115 kb on + strand, within Psest_2563at 2746.115 kb on + strand, within Psest_2563at 2746.116 kb on - strand, within Psest_2563at 2746.116 kb on - strand, within Psest_2563at 2746.116 kb on - strand, within Psest_2563at 2746.116 kb on - strand, within Psest_2563at 2746.171 kb on + strand, within Psest_2563at 2746.171 kb on + strand, within Psest_2563at 2746.171 kb on + strand, within Psest_2563at 2746.171 kb on + strand, within Psest_2563at 2746.171 kb on + strand, within Psest_2563at 2746.172 kb on - strand, within Psest_2563at 2746.182 kb on + strand, within Psest_2563at 2746.183 kb on - strand, within Psest_2563at 2746.275 kb on + strand, within Psest_2563at 2746.276 kb on - strand, within Psest_2563at 2746.276 kb on - strand, within Psest_2563at 2746.276 kb on - strand, within Psest_2563at 2746.282 kb on + strand, within Psest_2563at 2746.282 kb on + strand, within Psest_2563at 2746.283 kb on - strand, within Psest_2563at 2746.283 kb on - strand, within Psest_2563at 2746.570 kb on - strand, within Psest_2563at 2747.017 kb on + strand, within Psest_2564at 2747.018 kb on - strand, within Psest_2564at 2747.018 kb on - strand, within Psest_2564at 2747.057 kb on + strand, within Psest_2564at 2747.062 kb on + strand, within Psest_2564at 2747.063 kb on - strand, within Psest_2564at 2747.063 kb on - strand, within Psest_2564at 2747.063 kb on - strand, within Psest_2564at 2747.063 kb on - strand, within Psest_2564at 2747.063 kb on - strand, within Psest_2564at 2747.063 kb on - strand, within Psest_2564at 2747.063 kb on - strand, within Psest_2564at 2747.063 kb on - strand, within Psest_2564at 2747.063 kb on - strand, within Psest_2564at 2747.063 kb on - strand, within Psest_2564at 2747.159 kb on + strand, within Psest_2564at 2747.160 kb on - strand, within Psest_2564at 2747.160 kb on - strand, within Psest_2564at 2747.244 kb on + strand, within Psest_2564at 2747.425 kb on - strandat 2747.427 kb on + strandat 2747.428 kb on - strandat 2747.428 kb on - strandat 2747.428 kb on - strandat 2747.428 kb on - strandat 2747.428 kb on - strandat 2747.439 kb on - strandat 2747.495 kb on - strandat 2747.539 kb on - strandat 2747.539 kb on - strandat 2747.579 kb on + strandat 2747.579 kb on + strandat 2747.579 kb on + strandat 2747.580 kb on - strandat 2747.580 kb on - strandat 2747.583 kb on + strandat 2747.583 kb on + strandat 2747.583 kb on + strandat 2747.583 kb on + strandat 2747.583 kb on + strandat 2747.583 kb on + strandat 2747.583 kb on + strandat 2747.584 kb on - strandat 2747.584 kb on - strandat 2747.584 kb on - strandat 2747.584 kb on - strandat 2747.584 kb on - strandat 2747.584 kb on - strandat 2747.584 kb on - strandat 2747.584 kb on - strandat 2747.584 kb on - strandat 2747.584 kb on - strandat 2747.584 kb on - strandat 2747.637 kb on + strandat 2747.637 kb on + strandat 2747.637 kb on + strandat 2747.637 kb on + strandat 2747.637 kb on + strandat 2747.637 kb on + strandat 2747.638 kb on - strandat 2747.638 kb on - strandat 2747.638 kb on - strandat 2747.638 kb on - strandat 2747.638 kb on - strandat 2747.638 kb on - strandat 2747.638 kb on - strandat 2747.638 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.002 mg/ml
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2,744,617 + Psest_2562 0.60 -0.3
2,744,638 - Psest_2562 0.61 -0.5
2,744,718 + Psest_2562 0.65 -0.8
2,744,718 + Psest_2562 0.65 -0.1
2,744,718 + Psest_2562 0.65 +1.2
2,744,719 - Psest_2562 0.65 -1.5
2,744,719 - Psest_2562 0.65 -1.3
2,744,719 - Psest_2562 0.65 -0.8
2,744,719 - Psest_2562 0.65 +1.3
2,744,779 - Psest_2562 0.67 -0.6
2,744,779 - Psest_2562 0.67 -0.5
2,744,779 - Psest_2562 0.67 -0.3
2,744,779 - Psest_2562 0.67 -1.8
2,744,779 - Psest_2562 0.67 -0.8
2,745,121 + Psest_2562 0.82 -0.5
2,745,121 + Psest_2562 0.82 +0.5
2,745,122 - Psest_2562 0.82 -2.2
2,745,122 - Psest_2562 0.82 -0.8
2,745,847 - Psest_2563 0.21 +0.3
2,746,103 - Psest_2563 0.41 -1.4
2,746,115 + Psest_2563 0.42 -0.7
2,746,115 + Psest_2563 0.42 +0.2
2,746,115 + Psest_2563 0.42 -3.0
2,746,115 + Psest_2563 0.42 -0.3
2,746,115 + Psest_2563 0.42 -1.1
2,746,115 + Psest_2563 0.42 +1.2
2,746,115 + Psest_2563 0.42 -0.6
2,746,116 - Psest_2563 0.42 -1.5
2,746,116 - Psest_2563 0.42 -0.4
2,746,116 - Psest_2563 0.42 +0.6
2,746,116 - Psest_2563 0.42 -0.2
2,746,171 + Psest_2563 0.47 -0.3
2,746,171 + Psest_2563 0.47 -0.9
2,746,171 + Psest_2563 0.47 -1.1
2,746,171 + Psest_2563 0.47 -0.9
2,746,171 + Psest_2563 0.47 -2.7
2,746,172 - Psest_2563 0.47 -0.1
2,746,182 + Psest_2563 0.48 +0.2
2,746,183 - Psest_2563 0.48 +0.1
2,746,275 + Psest_2563 0.55 -1.3
2,746,276 - Psest_2563 0.55 -0.4
2,746,276 - Psest_2563 0.55 -0.8
2,746,276 - Psest_2563 0.55 -0.0
2,746,282 + Psest_2563 0.56 -1.3
2,746,282 + Psest_2563 0.56 +1.2
2,746,283 - Psest_2563 0.56 -0.2
2,746,283 - Psest_2563 0.56 +0.4
2,746,570 - Psest_2563 0.79 +0.5
2,747,017 + Psest_2564 0.31 +1.2
2,747,018 - Psest_2564 0.31 +1.7
2,747,018 - Psest_2564 0.31 -1.3
2,747,057 + Psest_2564 0.37 +0.2
2,747,062 + Psest_2564 0.38 -2.2
2,747,063 - Psest_2564 0.38 +0.2
2,747,063 - Psest_2564 0.38 +1.2
2,747,063 - Psest_2564 0.38 -0.2
2,747,063 - Psest_2564 0.38 +1.6
2,747,063 - Psest_2564 0.38 +0.2
2,747,063 - Psest_2564 0.38 -0.5
2,747,063 - Psest_2564 0.38 +0.7
2,747,063 - Psest_2564 0.38 -0.3
2,747,063 - Psest_2564 0.38 +0.2
2,747,063 - Psest_2564 0.38 -0.6
2,747,159 + Psest_2564 0.54 +1.2
2,747,160 - Psest_2564 0.54 -1.9
2,747,160 - Psest_2564 0.54 +0.1
2,747,244 + Psest_2564 0.67 +1.2
2,747,425 - -0.3
2,747,427 + -1.1
2,747,428 - -0.6
2,747,428 - -0.3
2,747,428 - -0.6
2,747,428 - +0.2
2,747,428 - -1.4
2,747,439 - +2.2
2,747,495 - -1.0
2,747,539 - -2.7
2,747,539 - -1.8
2,747,579 + -0.3
2,747,579 + -0.1
2,747,579 + -0.9
2,747,580 - -0.1
2,747,580 - -0.5
2,747,583 + -1.1
2,747,583 + +0.2
2,747,583 + +0.2
2,747,583 + -0.3
2,747,583 + -0.2
2,747,583 + +0.2
2,747,583 + -0.8
2,747,584 - -1.7
2,747,584 - +0.2
2,747,584 - +0.6
2,747,584 - -0.9
2,747,584 - -1.6
2,747,584 - +0.4
2,747,584 - -0.8
2,747,584 - -0.3
2,747,584 - -1.4
2,747,584 - -1.4
2,747,584 - +0.1
2,747,637 + -0.3
2,747,637 + -1.6
2,747,637 + +1.2
2,747,637 + +0.1
2,747,637 + -0.6
2,747,637 + -0.8
2,747,638 - -2.1
2,747,638 - -1.9
2,747,638 - +1.2
2,747,638 - -0.9
2,747,638 - +1.2
2,747,638 - -0.9
2,747,638 - +0.7
2,747,638 - -0.1

Or see this region's nucleotide sequence