Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2417

Experiment: Benzalkonium Chloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2416 and Psest_2417 are separated by 74 nucleotides Psest_2416: Psest_2416 - 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase), at 2,575,200 to 2,577,116 _2416 Psest_2417: Psest_2417 - TonB-dependent receptor, at 2,577,191 to 2,579,674 _2417 Position (kb) 2577 2578 2579 2580Strain fitness (log2 ratio) -1 0 1 2 3 4at 2576.527 kb on + strand, within Psest_2416at 2576.743 kb on + strand, within Psest_2416at 2577.223 kb on - strandat 2577.223 kb on - strandat 2577.223 kb on - strandat 2577.255 kb on + strandat 2577.255 kb on + strandat 2577.255 kb on + strandat 2577.255 kb on + strandat 2577.256 kb on - strandat 2577.256 kb on - strandat 2577.279 kb on + strandat 2577.279 kb on + strandat 2577.279 kb on + strandat 2577.279 kb on + strandat 2577.279 kb on + strandat 2577.279 kb on + strandat 2577.279 kb on + strandat 2577.280 kb on - strandat 2577.280 kb on - strandat 2577.280 kb on - strandat 2577.280 kb on - strandat 2577.280 kb on - strandat 2577.280 kb on - strandat 2577.280 kb on - strandat 2577.280 kb on - strandat 2577.280 kb on - strandat 2577.280 kb on - strandat 2577.280 kb on - strandat 2577.282 kb on + strandat 2577.282 kb on + strandat 2577.282 kb on + strandat 2577.282 kb on + strandat 2577.282 kb on + strandat 2577.282 kb on + strandat 2577.283 kb on - strandat 2577.283 kb on - strandat 2577.381 kb on + strandat 2577.381 kb on + strandat 2577.381 kb on + strandat 2577.426 kb on + strandat 2577.427 kb on - strandat 2577.438 kb on + strandat 2577.438 kb on + strandat 2577.439 kb on - strandat 2577.439 kb on - strandat 2577.590 kb on + strand, within Psest_2417at 2577.591 kb on - strand, within Psest_2417at 2577.657 kb on + strand, within Psest_2417at 2577.741 kb on + strand, within Psest_2417at 2577.741 kb on + strand, within Psest_2417at 2577.741 kb on + strand, within Psest_2417at 2577.742 kb on - strand, within Psest_2417at 2577.742 kb on - strand, within Psest_2417at 2577.742 kb on - strand, within Psest_2417at 2577.765 kb on + strand, within Psest_2417at 2577.766 kb on - strand, within Psest_2417at 2577.766 kb on - strand, within Psest_2417at 2577.766 kb on - strand, within Psest_2417at 2577.766 kb on - strand, within Psest_2417at 2577.766 kb on - strand, within Psest_2417at 2577.766 kb on - strand, within Psest_2417at 2577.774 kb on + strand, within Psest_2417at 2577.804 kb on + strand, within Psest_2417at 2577.804 kb on + strand, within Psest_2417at 2577.804 kb on + strand, within Psest_2417at 2577.804 kb on + strand, within Psest_2417at 2577.804 kb on + strand, within Psest_2417at 2577.804 kb on + strand, within Psest_2417at 2577.804 kb on + strand, within Psest_2417at 2577.805 kb on - strand, within Psest_2417at 2577.825 kb on + strand, within Psest_2417at 2578.200 kb on + strand, within Psest_2417at 2578.201 kb on - strand, within Psest_2417at 2578.201 kb on - strand, within Psest_2417at 2578.422 kb on + strand, within Psest_2417at 2578.518 kb on + strand, within Psest_2417at 2578.695 kb on + strand, within Psest_2417at 2578.695 kb on + strand, within Psest_2417at 2578.695 kb on + strand, within Psest_2417at 2578.695 kb on + strand, within Psest_2417at 2578.695 kb on + strand, within Psest_2417at 2578.695 kb on + strand, within Psest_2417at 2578.695 kb on + strand, within Psest_2417at 2578.695 kb on + strand, within Psest_2417at 2578.695 kb on + strand, within Psest_2417at 2578.696 kb on - strand, within Psest_2417at 2578.696 kb on - strand, within Psest_2417at 2578.696 kb on - strand, within Psest_2417at 2578.696 kb on - strand, within Psest_2417at 2578.696 kb on - strand, within Psest_2417at 2578.696 kb on - strand, within Psest_2417at 2578.696 kb on - strand, within Psest_2417at 2578.833 kb on + strand, within Psest_2417at 2578.833 kb on + strand, within Psest_2417at 2578.834 kb on - strand, within Psest_2417at 2578.849 kb on - strand, within Psest_2417at 2578.851 kb on + strand, within Psest_2417at 2578.851 kb on + strand, within Psest_2417at 2578.851 kb on + strand, within Psest_2417at 2578.851 kb on + strand, within Psest_2417at 2578.851 kb on + strand, within Psest_2417at 2578.852 kb on - strand, within Psest_2417at 2578.852 kb on - strand, within Psest_2417at 2578.852 kb on - strand, within Psest_2417at 2578.852 kb on - strand, within Psest_2417at 2578.852 kb on - strand, within Psest_2417at 2578.875 kb on + strand, within Psest_2417at 2578.876 kb on - strand, within Psest_2417at 2578.876 kb on - strand, within Psest_2417at 2578.876 kb on - strand, within Psest_2417at 2579.151 kb on + strand, within Psest_2417at 2579.151 kb on + strand, within Psest_2417at 2579.151 kb on + strand, within Psest_2417at 2579.152 kb on - strand, within Psest_2417at 2579.664 kb on + strandat 2579.664 kb on + strandat 2579.665 kb on - strandat 2579.665 kb on - strandat 2579.665 kb on - strandat 2579.821 kb on + strandat 2579.988 kb on - strandat 2580.013 kb on - strandat 2580.013 kb on - strandat 2580.133 kb on + strandat 2580.134 kb on - strandat 2580.295 kb on - strandat 2580.546 kb on + strandat 2580.546 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.002 mg/ml
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2,576,527 + Psest_2416 0.69 -1.6
2,576,743 + Psest_2416 0.80 +1.8
2,577,223 - -0.4
2,577,223 - +0.6
2,577,223 - +1.8
2,577,255 + -0.1
2,577,255 + +1.6
2,577,255 + -0.1
2,577,255 + +3.0
2,577,256 - +0.2
2,577,256 - +1.2
2,577,279 + +0.1
2,577,279 + -0.0
2,577,279 + +2.2
2,577,279 + +0.2
2,577,279 + -1.6
2,577,279 + +0.2
2,577,279 + +1.8
2,577,280 - +0.6
2,577,280 - -1.6
2,577,280 - +0.5
2,577,280 - +0.2
2,577,280 - +0.2
2,577,280 - -0.4
2,577,280 - +2.8
2,577,280 - -0.8
2,577,280 - +2.8
2,577,280 - -1.4
2,577,280 - -0.1
2,577,282 + +0.9
2,577,282 + +0.2
2,577,282 + +0.4
2,577,282 + +0.6
2,577,282 + +0.6
2,577,282 + -0.2
2,577,283 - +2.8
2,577,283 - +1.2
2,577,381 + +2.2
2,577,381 + -0.3
2,577,381 + -1.1
2,577,426 + +0.4
2,577,427 - +1.2
2,577,438 + +0.4
2,577,438 + -0.8
2,577,439 - -0.6
2,577,439 - -0.4
2,577,590 + Psest_2417 0.16 +0.4
2,577,591 - Psest_2417 0.16 +0.6
2,577,657 + Psest_2417 0.19 +2.2
2,577,741 + Psest_2417 0.22 -1.4
2,577,741 + Psest_2417 0.22 +1.0
2,577,741 + Psest_2417 0.22 +1.0
2,577,742 - Psest_2417 0.22 -1.0
2,577,742 - Psest_2417 0.22 -0.3
2,577,742 - Psest_2417 0.22 +1.5
2,577,765 + Psest_2417 0.23 -0.4
2,577,766 - Psest_2417 0.23 -0.2
2,577,766 - Psest_2417 0.23 +1.2
2,577,766 - Psest_2417 0.23 +1.6
2,577,766 - Psest_2417 0.23 -0.4
2,577,766 - Psest_2417 0.23 +0.9
2,577,766 - Psest_2417 0.23 +1.5
2,577,774 + Psest_2417 0.23 +1.6
2,577,804 + Psest_2417 0.25 -0.2
2,577,804 + Psest_2417 0.25 +0.3
2,577,804 + Psest_2417 0.25 -0.6
2,577,804 + Psest_2417 0.25 +3.0
2,577,804 + Psest_2417 0.25 +0.9
2,577,804 + Psest_2417 0.25 +0.2
2,577,804 + Psest_2417 0.25 -0.2
2,577,805 - Psest_2417 0.25 +0.2
2,577,825 + Psest_2417 0.26 +1.6
2,578,200 + Psest_2417 0.41 +0.1
2,578,201 - Psest_2417 0.41 +1.7
2,578,201 - Psest_2417 0.41 -0.6
2,578,422 + Psest_2417 0.50 +0.9
2,578,518 + Psest_2417 0.53 -0.2
2,578,695 + Psest_2417 0.61 +0.5
2,578,695 + Psest_2417 0.61 +0.2
2,578,695 + Psest_2417 0.61 +0.4
2,578,695 + Psest_2417 0.61 +0.5
2,578,695 + Psest_2417 0.61 +2.2
2,578,695 + Psest_2417 0.61 +1.4
2,578,695 + Psest_2417 0.61 +1.8
2,578,695 + Psest_2417 0.61 +2.7
2,578,695 + Psest_2417 0.61 +0.6
2,578,696 - Psest_2417 0.61 +0.1
2,578,696 - Psest_2417 0.61 +0.1
2,578,696 - Psest_2417 0.61 +2.2
2,578,696 - Psest_2417 0.61 +1.2
2,578,696 - Psest_2417 0.61 -0.5
2,578,696 - Psest_2417 0.61 -0.8
2,578,696 - Psest_2417 0.61 -1.1
2,578,833 + Psest_2417 0.66 -0.8
2,578,833 + Psest_2417 0.66 -0.4
2,578,834 - Psest_2417 0.66 +1.7
2,578,849 - Psest_2417 0.67 -0.5
2,578,851 + Psest_2417 0.67 +3.8
2,578,851 + Psest_2417 0.67 +2.8
2,578,851 + Psest_2417 0.67 -0.0
2,578,851 + Psest_2417 0.67 +1.5
2,578,851 + Psest_2417 0.67 -0.3
2,578,852 - Psest_2417 0.67 +0.6
2,578,852 - Psest_2417 0.67 +0.2
2,578,852 - Psest_2417 0.67 +0.8
2,578,852 - Psest_2417 0.67 +0.8
2,578,852 - Psest_2417 0.67 -1.6
2,578,875 + Psest_2417 0.68 +0.2
2,578,876 - Psest_2417 0.68 +0.6
2,578,876 - Psest_2417 0.68 -0.4
2,578,876 - Psest_2417 0.68 +1.2
2,579,151 + Psest_2417 0.79 +0.3
2,579,151 + Psest_2417 0.79 +1.0
2,579,151 + Psest_2417 0.79 +0.4
2,579,152 - Psest_2417 0.79 -0.7
2,579,664 + +0.2
2,579,664 + +0.1
2,579,665 - -0.7
2,579,665 - +0.1
2,579,665 - +0.9
2,579,821 + +0.6
2,579,988 - -1.1
2,580,013 - -0.1
2,580,013 - +0.5
2,580,133 + -0.8
2,580,134 - -0.2
2,580,295 - +0.3
2,580,546 + -0.6
2,580,546 + -0.0

Or see this region's nucleotide sequence