Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2223

Experiment: Benzalkonium Chloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2222 and Psest_2223 are separated by 95 nucleotidesPsest_2223 and Psest_2225 are separated by 532 nucleotidesPsest_2225 and Psest_2226 are separated by 54 nucleotides Psest_2222: Psest_2222 - ribose-phosphate pyrophosphokinase, at 2,372,197 to 2,373,150 _2222 Psest_2223: Psest_2223 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 2,373,246 to 2,373,995 _2223 Psest_2225: Psest_2225 - Diacylglycerol kinase, at 2,374,528 to 2,374,914 _2225 Psest_2226: Psest_2226 - Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily, at 2,374,969 to 2,377,005 _2226 Position (kb) 2373 2374Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 2372.381 kb on - strand, within Psest_2222at 2372.546 kb on - strand, within Psest_2222at 2372.589 kb on + strand, within Psest_2222at 2372.649 kb on + strand, within Psest_2222at 2372.803 kb on + strand, within Psest_2222at 2372.803 kb on + strand, within Psest_2222at 2372.803 kb on + strand, within Psest_2222at 2372.803 kb on + strand, within Psest_2222at 2372.803 kb on + strand, within Psest_2222at 2372.803 kb on + strand, within Psest_2222at 2372.803 kb on + strand, within Psest_2222at 2372.803 kb on + strand, within Psest_2222at 2372.803 kb on + strand, within Psest_2222at 2372.803 kb on + strand, within Psest_2222at 2372.804 kb on - strand, within Psest_2222at 2372.861 kb on + strand, within Psest_2222at 2372.861 kb on + strand, within Psest_2222at 2372.862 kb on - strand, within Psest_2222at 2373.215 kb on - strandat 2373.395 kb on + strand, within Psest_2223at 2373.395 kb on + strand, within Psest_2223at 2373.395 kb on + strand, within Psest_2223at 2373.396 kb on - strand, within Psest_2223at 2373.396 kb on - strand, within Psest_2223at 2373.396 kb on - strand, within Psest_2223at 2373.396 kb on - strand, within Psest_2223at 2373.396 kb on - strand, within Psest_2223at 2373.396 kb on - strand, within Psest_2223at 2373.435 kb on + strand, within Psest_2223at 2373.435 kb on + strand, within Psest_2223at 2373.435 kb on + strand, within Psest_2223at 2373.436 kb on - strand, within Psest_2223at 2373.436 kb on - strand, within Psest_2223at 2373.465 kb on + strand, within Psest_2223at 2373.465 kb on + strand, within Psest_2223at 2373.466 kb on - strand, within Psest_2223at 2373.466 kb on - strand, within Psest_2223at 2373.524 kb on - strand, within Psest_2223at 2373.669 kb on - strand, within Psest_2223at 2373.834 kb on + strand, within Psest_2223at 2373.834 kb on + strand, within Psest_2223at 2373.834 kb on + strand, within Psest_2223at 2373.835 kb on - strand, within Psest_2223at 2373.835 kb on - strand, within Psest_2223at 2373.835 kb on - strand, within Psest_2223at 2373.835 kb on - strand, within Psest_2223at 2373.835 kb on - strand, within Psest_2223at 2373.835 kb on - strand, within Psest_2223at 2374.013 kb on + strandat 2374.014 kb on - strandat 2374.051 kb on + strandat 2374.103 kb on + strandat 2374.103 kb on + strandat 2374.103 kb on + strandat 2374.103 kb on + strandat 2374.103 kb on + strandat 2374.103 kb on + strandat 2374.104 kb on - strandat 2374.104 kb on - strandat 2374.104 kb on - strandat 2374.104 kb on - strandat 2374.104 kb on - strandat 2374.104 kb on - strandat 2374.104 kb on - strandat 2374.106 kb on + strandat 2374.106 kb on + strandat 2374.143 kb on + strandat 2374.143 kb on + strandat 2374.161 kb on - strandat 2374.161 kb on - strandat 2374.291 kb on - strandat 2374.299 kb on + strandat 2374.299 kb on + strandat 2374.300 kb on - strandat 2374.300 kb on - strandat 2374.300 kb on - strandat 2374.305 kb on - strandat 2374.496 kb on + strandat 2374.497 kb on - strandat 2374.497 kb on - strandat 2374.497 kb on - strandat 2374.498 kb on + strandat 2374.498 kb on + strandat 2374.499 kb on - strandat 2374.499 kb on - strandat 2374.527 kb on + strandat 2374.528 kb on - strandat 2374.620 kb on + strand, within Psest_2225at 2374.661 kb on + strand, within Psest_2225at 2374.662 kb on - strand, within Psest_2225at 2374.662 kb on - strand, within Psest_2225at 2374.709 kb on + strand, within Psest_2225at 2374.910 kb on - strandat 2374.991 kb on + strandat 2374.991 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.002 mg/ml
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2,372,381 - Psest_2222 0.19 -1.9
2,372,546 - Psest_2222 0.37 +0.6
2,372,589 + Psest_2222 0.41 -0.7
2,372,649 + Psest_2222 0.47 +0.3
2,372,803 + Psest_2222 0.64 +2.6
2,372,803 + Psest_2222 0.64 +1.3
2,372,803 + Psest_2222 0.64 +0.2
2,372,803 + Psest_2222 0.64 -0.3
2,372,803 + Psest_2222 0.64 +0.2
2,372,803 + Psest_2222 0.64 +0.7
2,372,803 + Psest_2222 0.64 +0.9
2,372,803 + Psest_2222 0.64 +1.0
2,372,803 + Psest_2222 0.64 -0.1
2,372,803 + Psest_2222 0.64 +1.3
2,372,804 - Psest_2222 0.64 +0.3
2,372,861 + Psest_2222 0.70 -2.3
2,372,861 + Psest_2222 0.70 -1.0
2,372,862 - Psest_2222 0.70 +0.2
2,373,215 - -0.8
2,373,395 + Psest_2223 0.20 +0.3
2,373,395 + Psest_2223 0.20 +1.9
2,373,395 + Psest_2223 0.20 +0.6
2,373,396 - Psest_2223 0.20 -0.5
2,373,396 - Psest_2223 0.20 +2.0
2,373,396 - Psest_2223 0.20 +0.6
2,373,396 - Psest_2223 0.20 -0.1
2,373,396 - Psest_2223 0.20 +0.3
2,373,396 - Psest_2223 0.20 +0.6
2,373,435 + Psest_2223 0.25 -1.0
2,373,435 + Psest_2223 0.25 -0.7
2,373,435 + Psest_2223 0.25 -0.7
2,373,436 - Psest_2223 0.25 -1.3
2,373,436 - Psest_2223 0.25 -0.3
2,373,465 + Psest_2223 0.29 +0.0
2,373,465 + Psest_2223 0.29 -0.2
2,373,466 - Psest_2223 0.29 -0.7
2,373,466 - Psest_2223 0.29 -1.8
2,373,524 - Psest_2223 0.37 +0.1
2,373,669 - Psest_2223 0.56 -1.7
2,373,834 + Psest_2223 0.78 -0.1
2,373,834 + Psest_2223 0.78 -2.1
2,373,834 + Psest_2223 0.78 -0.6
2,373,835 - Psest_2223 0.79 -0.9
2,373,835 - Psest_2223 0.79 -0.3
2,373,835 - Psest_2223 0.79 -0.2
2,373,835 - Psest_2223 0.79 -0.6
2,373,835 - Psest_2223 0.79 -1.5
2,373,835 - Psest_2223 0.79 -1.3
2,374,013 + +0.2
2,374,014 - -0.3
2,374,051 + -0.7
2,374,103 + -0.2
2,374,103 + -0.7
2,374,103 + -2.3
2,374,103 + -0.9
2,374,103 + -1.2
2,374,103 + -1.0
2,374,104 - -0.7
2,374,104 - -0.4
2,374,104 - +0.3
2,374,104 - -0.4
2,374,104 - +0.3
2,374,104 - -0.2
2,374,104 - +3.3
2,374,106 + -0.8
2,374,106 + +0.0
2,374,143 + -0.8
2,374,143 + +5.0
2,374,161 - -0.7
2,374,161 - +1.3
2,374,291 - +0.0
2,374,299 + +0.1
2,374,299 + -0.0
2,374,300 - +0.3
2,374,300 - -1.0
2,374,300 - -0.7
2,374,305 - +2.3
2,374,496 + -0.2
2,374,497 - +3.3
2,374,497 - -1.7
2,374,497 - -2.2
2,374,498 + -0.7
2,374,498 + -0.1
2,374,499 - -0.0
2,374,499 - -1.5
2,374,527 + -0.6
2,374,528 - -0.9
2,374,620 + Psest_2225 0.24 +0.5
2,374,661 + Psest_2225 0.34 -0.7
2,374,662 - Psest_2225 0.35 +0.4
2,374,662 - Psest_2225 0.35 -0.2
2,374,709 + Psest_2225 0.47 -2.3
2,374,910 - -0.7
2,374,991 + -1.4
2,374,991 + -0.0

Or see this region's nucleotide sequence