Experiment: Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1612 and Psest_1613 overlap by 4 nucleotides Psest_1613 and Psest_1614 are separated by 10 nucleotides Psest_1614 and Psest_1615 are separated by 203 nucleotides Psest_1615 and Psest_1616 are separated by 101 nucleotides Psest_1616 and Psest_1617 are separated by 58 nucleotides
Psest_1612: Psest_1612 - ABC-type multidrug transport system, ATPase component, at 1,716,213 to 1,717,136
_1612
Psest_1613: Psest_1613 - hypothetical protein, at 1,717,133 to 1,717,864
_1613
Psest_1614: Psest_1614 - ABC-type uncharacterized transport system involved in gliding motility, auxiliary component, at 1,717,875 to 1,719,710
_1614
Psest_1615: Psest_1615 - Cold shock proteins, at 1,719,914 to 1,720,123
_1615
Psest_1616: Psest_1616 - hypothetical protein, at 1,720,225 to 1,720,596
_1616
Psest_1617: Psest_1617 - Methylase involved in ubiquinone/menaquinone biosynthesis, at 1,720,655 to 1,721,461
_1617
Position (kb)
1717
1718
1719
1720 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1716.882 kb on + strand, within Psest_1612 at 1716.883 kb on - strand, within Psest_1612 at 1716.883 kb on - strand, within Psest_1612 at 1717.175 kb on + strand at 1717.175 kb on + strand at 1717.175 kb on + strand at 1717.176 kb on - strand at 1717.176 kb on - strand at 1717.196 kb on + strand at 1717.197 kb on - strand at 1717.197 kb on - strand at 1717.197 kb on - strand at 1717.197 kb on - strand at 1717.197 kb on - strand at 1717.200 kb on + strand at 1717.200 kb on + strand at 1717.200 kb on + strand at 1717.200 kb on + strand at 1717.200 kb on + strand at 1717.200 kb on + strand at 1717.200 kb on + strand at 1717.200 kb on + strand at 1717.200 kb on + strand at 1717.201 kb on - strand at 1717.201 kb on - strand at 1717.201 kb on - strand at 1717.201 kb on - strand at 1717.201 kb on - strand at 1717.201 kb on - strand at 1717.201 kb on - strand at 1717.201 kb on - strand at 1717.201 kb on - strand at 1717.201 kb on - strand at 1717.201 kb on - strand at 1717.244 kb on + strand, within Psest_1613 at 1717.244 kb on + strand, within Psest_1613 at 1717.244 kb on + strand, within Psest_1613 at 1717.244 kb on + strand, within Psest_1613 at 1717.244 kb on + strand, within Psest_1613 at 1717.245 kb on - strand, within Psest_1613 at 1717.245 kb on - strand, within Psest_1613 at 1717.259 kb on + strand, within Psest_1613 at 1717.304 kb on - strand, within Psest_1613 at 1717.304 kb on - strand, within Psest_1613 at 1717.313 kb on + strand, within Psest_1613 at 1717.499 kb on + strand, within Psest_1613 at 1717.500 kb on - strand, within Psest_1613 at 1717.793 kb on + strand at 1717.794 kb on - strand at 1717.794 kb on - strand at 1717.874 kb on + strand at 1717.874 kb on + strand at 1717.874 kb on + strand at 1717.875 kb on - strand at 1717.875 kb on - strand at 1717.890 kb on + strand at 1717.890 kb on + strand at 1717.999 kb on - strand at 1718.067 kb on + strand, within Psest_1614 at 1718.105 kb on + strand, within Psest_1614 at 1718.105 kb on + strand, within Psest_1614 at 1718.109 kb on + strand, within Psest_1614 at 1718.109 kb on + strand, within Psest_1614 at 1718.142 kb on + strand, within Psest_1614 at 1718.271 kb on + strand, within Psest_1614 at 1718.271 kb on + strand, within Psest_1614 at 1718.271 kb on + strand, within Psest_1614 at 1718.271 kb on + strand, within Psest_1614 at 1718.272 kb on - strand, within Psest_1614 at 1718.272 kb on - strand, within Psest_1614 at 1718.272 kb on - strand, within Psest_1614 at 1718.272 kb on - strand, within Psest_1614 at 1718.555 kb on - strand, within Psest_1614 at 1718.602 kb on + strand, within Psest_1614 at 1718.603 kb on - strand, within Psest_1614 at 1718.604 kb on + strand, within Psest_1614 at 1718.605 kb on - strand, within Psest_1614 at 1718.605 kb on - strand, within Psest_1614 at 1718.605 kb on - strand, within Psest_1614 at 1718.793 kb on + strand, within Psest_1614 at 1719.079 kb on - strand, within Psest_1614 at 1719.080 kb on + strand, within Psest_1614 at 1719.080 kb on + strand, within Psest_1614 at 1719.200 kb on + strand, within Psest_1614 at 1719.200 kb on + strand, within Psest_1614 at 1719.201 kb on - strand, within Psest_1614 at 1719.201 kb on - strand, within Psest_1614 at 1719.801 kb on + strand at 1719.802 kb on - strand at 1719.802 kb on - strand at 1719.802 kb on - strand at 1719.803 kb on + strand at 1719.804 kb on - strand at 1719.867 kb on - strand at 1719.913 kb on - strand at 1720.173 kb on + strand at 1720.184 kb on + strand at 1720.203 kb on + strand at 1720.571 kb on + strand at 1720.571 kb on + strand at 1720.571 kb on + strand at 1720.571 kb on + strand at 1720.572 kb on - strand at 1720.572 kb on - strand at 1720.572 kb on - strand at 1720.572 kb on - strand at 1720.609 kb on + strand at 1720.609 kb on + strand at 1720.609 kb on + strand at 1720.609 kb on + strand at 1720.609 kb on + strand at 1720.609 kb on + strand at 1720.610 kb on - strand at 1720.610 kb on - strand at 1720.610 kb on - strand at 1720.610 kb on - strand at 1720.610 kb on - strand at 1720.610 kb on - strand at 1720.610 kb on - strand at 1720.610 kb on - strand at 1720.610 kb on - strand at 1720.610 kb on - strand at 1720.610 kb on - strand at 1720.610 kb on - strand at 1720.656 kb on + strand at 1720.656 kb on + strand at 1720.657 kb on - strand at 1720.680 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.002 mg/ml remove 1,716,882 + Psest_1612 0.72 +0.3 1,716,883 - Psest_1612 0.73 +0.4 1,716,883 - Psest_1612 0.73 -0.1 1,717,175 + -1.9 1,717,175 + -0.8 1,717,175 + -0.0 1,717,176 - -0.9 1,717,176 - +1.8 1,717,196 + +1.2 1,717,197 - -0.8 1,717,197 - +0.2 1,717,197 - -2.2 1,717,197 - +1.1 1,717,197 - -1.4 1,717,200 + -2.8 1,717,200 + +0.2 1,717,200 + -2.2 1,717,200 + +1.2 1,717,200 + +1.4 1,717,200 + -0.4 1,717,200 + -0.6 1,717,200 + -0.2 1,717,200 + -0.8 1,717,201 - -0.8 1,717,201 - -0.6 1,717,201 - -0.4 1,717,201 - +0.0 1,717,201 - +0.5 1,717,201 - -0.1 1,717,201 - -1.3 1,717,201 - -0.6 1,717,201 - +0.1 1,717,201 - -1.4 1,717,201 - -1.4 1,717,244 + Psest_1613 0.15 -1.9 1,717,244 + Psest_1613 0.15 -1.0 1,717,244 + Psest_1613 0.15 -0.9 1,717,244 + Psest_1613 0.15 +0.2 1,717,244 + Psest_1613 0.15 -0.2 1,717,245 - Psest_1613 0.15 -1.2 1,717,245 - Psest_1613 0.15 +0.6 1,717,259 + Psest_1613 0.17 +2.0 1,717,304 - Psest_1613 0.23 -2.4 1,717,304 - Psest_1613 0.23 -1.9 1,717,313 + Psest_1613 0.25 +3.8 1,717,499 + Psest_1613 0.50 -0.8 1,717,500 - Psest_1613 0.50 -2.2 1,717,793 + +1.2 1,717,794 - -1.4 1,717,794 - -3.0 1,717,874 + -0.1 1,717,874 + +0.5 1,717,874 + -1.4 1,717,875 - +0.6 1,717,875 - +0.2 1,717,890 + -0.8 1,717,890 + -1.0 1,717,999 - +0.2 1,718,067 + Psest_1614 0.10 +1.2 1,718,105 + Psest_1614 0.13 -0.4 1,718,105 + Psest_1614 0.13 -1.6 1,718,109 + Psest_1614 0.13 +0.2 1,718,109 + Psest_1614 0.13 +1.2 1,718,142 + Psest_1614 0.15 -2.6 1,718,271 + Psest_1614 0.22 -1.8 1,718,271 + Psest_1614 0.22 +0.2 1,718,271 + Psest_1614 0.22 +1.2 1,718,271 + Psest_1614 0.22 +1.2 1,718,272 - Psest_1614 0.22 -0.8 1,718,272 - Psest_1614 0.22 -0.1 1,718,272 - Psest_1614 0.22 -0.0 1,718,272 - Psest_1614 0.22 -1.4 1,718,555 - Psest_1614 0.37 +1.2 1,718,602 + Psest_1614 0.40 -1.4 1,718,603 - Psest_1614 0.40 +1.2 1,718,604 + Psest_1614 0.40 +1.2 1,718,605 - Psest_1614 0.40 -1.1 1,718,605 - Psest_1614 0.40 -0.8 1,718,605 - Psest_1614 0.40 -2.3 1,718,793 + Psest_1614 0.50 -1.1 1,719,079 - Psest_1614 0.66 +0.5 1,719,080 + Psest_1614 0.66 +1.2 1,719,080 + Psest_1614 0.66 -1.6 1,719,200 + Psest_1614 0.72 -1.4 1,719,200 + Psest_1614 0.72 -1.1 1,719,201 - Psest_1614 0.72 -1.6 1,719,201 - Psest_1614 0.72 +1.2 1,719,801 + +1.6 1,719,802 - -1.6 1,719,802 - +1.8 1,719,802 - -0.2 1,719,803 + +1.8 1,719,804 - +0.2 1,719,867 - +0.2 1,719,913 - +0.2 1,720,173 + +2.2 1,720,184 + +1.8 1,720,203 + -0.2 1,720,571 + +0.6 1,720,571 + +0.2 1,720,571 + +1.2 1,720,571 + -2.1 1,720,572 - +0.4 1,720,572 - +2.2 1,720,572 - +1.2 1,720,572 - -0.1 1,720,609 + +0.4 1,720,609 + -0.8 1,720,609 + +0.2 1,720,609 + +0.6 1,720,609 + -0.4 1,720,609 + +1.2 1,720,610 - +0.4 1,720,610 - +0.6 1,720,610 - -0.8 1,720,610 - +0.5 1,720,610 - -0.1 1,720,610 - -0.4 1,720,610 - +0.7 1,720,610 - +3.8 1,720,610 - +1.0 1,720,610 - -0.4 1,720,610 - +1.2 1,720,610 - -1.1 1,720,656 + +1.2 1,720,656 + +0.2 1,720,657 - +0.1 1,720,680 + +0.4
Or see this region's nucleotide sequence