Experiment: Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1566 and Psest_1567 are separated by 33 nucleotides Psest_1567 and Psest_1568 are separated by 135 nucleotides
Psest_1566: Psest_1566 - Cation/multidrug efflux pump, at 1,665,822 to 1,668,902
_1566
Psest_1567: Psest_1567 - Transcriptional regulator, at 1,668,936 to 1,669,496
_1567
Psest_1568: Psest_1568 - hypothetical protein, at 1,669,632 to 1,670,543
_1568
Position (kb)
1668
1669
1670 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1668.210 kb on + strand, within Psest_1566 at 1668.771 kb on - strand at 1668.853 kb on + strand at 1668.855 kb on + strand at 1668.856 kb on - strand at 1668.856 kb on - strand at 1668.910 kb on + strand at 1668.910 kb on + strand at 1668.910 kb on + strand at 1668.911 kb on - strand at 1668.911 kb on - strand at 1668.911 kb on - strand at 1668.912 kb on + strand at 1668.912 kb on + strand at 1668.913 kb on - strand at 1669.042 kb on + strand, within Psest_1567 at 1669.074 kb on - strand, within Psest_1567 at 1669.372 kb on + strand, within Psest_1567 at 1669.373 kb on - strand, within Psest_1567 at 1669.373 kb on - strand, within Psest_1567 at 1669.628 kb on + strand at 1669.628 kb on + strand at 1669.628 kb on + strand at 1669.629 kb on - strand at 1669.629 kb on - strand at 1669.657 kb on - strand at 1669.673 kb on - strand at 1669.973 kb on + strand, within Psest_1568 at 1670.080 kb on + strand, within Psest_1568 at 1670.080 kb on + strand, within Psest_1568 at 1670.080 kb on + strand, within Psest_1568 at 1670.080 kb on + strand, within Psest_1568 at 1670.080 kb on + strand, within Psest_1568 at 1670.080 kb on + strand, within Psest_1568 at 1670.080 kb on + strand, within Psest_1568 at 1670.081 kb on - strand, within Psest_1568 at 1670.081 kb on - strand, within Psest_1568 at 1670.221 kb on - strand, within Psest_1568 at 1670.340 kb on + strand, within Psest_1568 at 1670.340 kb on + strand, within Psest_1568 at 1670.397 kb on + strand, within Psest_1568
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.002 mg/ml remove 1,668,210 + Psest_1566 0.78 -0.4 1,668,771 - +1.2 1,668,853 + -0.0 1,668,855 + +1.0 1,668,856 - -1.1 1,668,856 - +1.8 1,668,910 + -1.1 1,668,910 + +0.2 1,668,910 + -0.8 1,668,911 - +0.2 1,668,911 - +0.2 1,668,911 - -0.9 1,668,912 + +0.7 1,668,912 + +0.5 1,668,913 - -0.1 1,669,042 + Psest_1567 0.19 -2.4 1,669,074 - Psest_1567 0.25 -1.4 1,669,372 + Psest_1567 0.78 +0.6 1,669,373 - Psest_1567 0.78 -0.3 1,669,373 - Psest_1567 0.78 -1.3 1,669,628 + +0.4 1,669,628 + -0.6 1,669,628 + -1.8 1,669,629 - +0.1 1,669,629 - -1.1 1,669,657 - -0.8 1,669,673 - +1.5 1,669,973 + Psest_1568 0.37 -0.4 1,670,080 + Psest_1568 0.49 -0.4 1,670,080 + Psest_1568 0.49 +0.1 1,670,080 + Psest_1568 0.49 +2.8 1,670,080 + Psest_1568 0.49 -2.0 1,670,080 + Psest_1568 0.49 -0.8 1,670,080 + Psest_1568 0.49 -0.2 1,670,080 + Psest_1568 0.49 +0.8 1,670,081 - Psest_1568 0.49 +0.7 1,670,081 - Psest_1568 0.49 +0.3 1,670,221 - Psest_1568 0.65 -0.2 1,670,340 + Psest_1568 0.78 +0.2 1,670,340 + Psest_1568 0.78 +0.5 1,670,397 + Psest_1568 0.84 -0.5
Or see this region's nucleotide sequence