Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1291

Experiment: Benzalkonium Chloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1290 and Psest_1291 overlap by 4 nucleotidesPsest_1291 and Psest_1292 are separated by 272 nucleotidesPsest_1292 and Psest_1293 are separated by 189 nucleotides Psest_1290: Psest_1290 - ABC-type spermidine/putrescine transport systems, ATPase components, at 1,395,602 to 1,396,699 _1290 Psest_1291: Psest_1291 - ornithine carbamoyltransferase, at 1,396,696 to 1,397,616 _1291 Psest_1292: Psest_1292 - monothiol glutaredoxin, Grx4 family, at 1,397,889 to 1,398,215 _1292 Psest_1293: Psest_1293 - VanZ like family., at 1,398,405 to 1,398,767 _1293 Position (kb) 1396 1397 1398Strain fitness (log2 ratio) -2 -1 0 1 2at 1396.710 kb on - strandat 1397.624 kb on - strandat 1397.624 kb on - strandat 1397.624 kb on - strandat 1397.758 kb on + strandat 1397.759 kb on - strandat 1397.811 kb on - strandat 1397.884 kb on - strandat 1397.884 kb on - strandat 1397.942 kb on - strand, within Psest_1292at 1397.942 kb on - strand, within Psest_1292at 1397.942 kb on - strand, within Psest_1292at 1397.943 kb on + strand, within Psest_1292at 1397.943 kb on + strand, within Psest_1292at 1397.943 kb on + strand, within Psest_1292at 1397.943 kb on + strand, within Psest_1292at 1397.943 kb on + strand, within Psest_1292at 1397.943 kb on + strand, within Psest_1292at 1397.943 kb on + strand, within Psest_1292at 1397.943 kb on + strand, within Psest_1292at 1397.943 kb on + strand, within Psest_1292at 1397.943 kb on + strand, within Psest_1292at 1397.943 kb on + strand, within Psest_1292at 1397.943 kb on + strand, within Psest_1292at 1397.943 kb on + strand, within Psest_1292at 1397.943 kb on + strand, within Psest_1292at 1397.943 kb on + strand, within Psest_1292at 1397.943 kb on + strand, within Psest_1292at 1397.943 kb on + strand, within Psest_1292at 1397.943 kb on + strand, within Psest_1292at 1397.943 kb on + strand, within Psest_1292at 1397.943 kb on + strand, within Psest_1292at 1397.943 kb on + strand, within Psest_1292at 1397.943 kb on + strand, within Psest_1292at 1397.943 kb on + strand, within Psest_1292at 1397.943 kb on + strand, within Psest_1292at 1397.943 kb on + strand, within Psest_1292at 1397.943 kb on + strand, within Psest_1292at 1397.943 kb on + strand, within Psest_1292at 1397.943 kb on + strand, within Psest_1292at 1397.944 kb on - strand, within Psest_1292at 1397.944 kb on - strand, within Psest_1292at 1397.944 kb on - strand, within Psest_1292at 1397.944 kb on - strand, within Psest_1292at 1397.944 kb on - strand, within Psest_1292at 1397.944 kb on - strand, within Psest_1292at 1397.944 kb on - strand, within Psest_1292at 1397.944 kb on - strand, within Psest_1292at 1397.944 kb on - strand, within Psest_1292at 1398.078 kb on + strand, within Psest_1292at 1398.079 kb on - strand, within Psest_1292at 1398.079 kb on - strand, within Psest_1292at 1398.290 kb on + strandat 1398.297 kb on + strandat 1398.411 kb on + strandat 1398.412 kb on - strandat 1398.412 kb on - strandat 1398.412 kb on - strandat 1398.412 kb on - strandat 1398.412 kb on - strandat 1398.412 kb on - strandat 1398.545 kb on + strand, within Psest_1293at 1398.545 kb on + strand, within Psest_1293

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.002 mg/ml
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1,396,710 - -0.8
1,397,624 - +0.6
1,397,624 - -1.4
1,397,624 - -1.4
1,397,758 + -0.5
1,397,759 - -0.5
1,397,811 - -0.3
1,397,884 - -0.4
1,397,884 - -0.8
1,397,942 - Psest_1292 0.16 +0.5
1,397,942 - Psest_1292 0.16 -0.1
1,397,942 - Psest_1292 0.16 +0.7
1,397,943 + Psest_1292 0.17 +0.5
1,397,943 + Psest_1292 0.17 +1.2
1,397,943 + Psest_1292 0.17 +0.2
1,397,943 + Psest_1292 0.17 +0.2
1,397,943 + Psest_1292 0.17 +0.7
1,397,943 + Psest_1292 0.17 -0.1
1,397,943 + Psest_1292 0.17 +2.0
1,397,943 + Psest_1292 0.17 +0.2
1,397,943 + Psest_1292 0.17 +0.6
1,397,943 + Psest_1292 0.17 -0.5
1,397,943 + Psest_1292 0.17 +0.9
1,397,943 + Psest_1292 0.17 +1.6
1,397,943 + Psest_1292 0.17 +1.3
1,397,943 + Psest_1292 0.17 +1.2
1,397,943 + Psest_1292 0.17 +0.9
1,397,943 + Psest_1292 0.17 +0.3
1,397,943 + Psest_1292 0.17 -0.8
1,397,943 + Psest_1292 0.17 +0.2
1,397,943 + Psest_1292 0.17 +0.6
1,397,943 + Psest_1292 0.17 +1.6
1,397,943 + Psest_1292 0.17 +0.9
1,397,943 + Psest_1292 0.17 -0.2
1,397,943 + Psest_1292 0.17 +0.9
1,397,943 + Psest_1292 0.17 +0.3
1,397,943 + Psest_1292 0.17 +0.6
1,397,943 + Psest_1292 0.17 +0.7
1,397,943 + Psest_1292 0.17 +1.2
1,397,943 + Psest_1292 0.17 -0.1
1,397,944 - Psest_1292 0.17 -2.0
1,397,944 - Psest_1292 0.17 +0.8
1,397,944 - Psest_1292 0.17 -0.3
1,397,944 - Psest_1292 0.17 +0.2
1,397,944 - Psest_1292 0.17 +1.7
1,397,944 - Psest_1292 0.17 +0.7
1,397,944 - Psest_1292 0.17 +1.6
1,397,944 - Psest_1292 0.17 -0.2
1,397,944 - Psest_1292 0.17 +0.6
1,398,078 + Psest_1292 0.58 +1.2
1,398,079 - Psest_1292 0.58 +0.2
1,398,079 - Psest_1292 0.58 -0.3
1,398,290 + +0.3
1,398,297 + -1.9
1,398,411 + +0.0
1,398,412 - +0.7
1,398,412 - -0.2
1,398,412 - -0.1
1,398,412 - -0.3
1,398,412 - -0.8
1,398,412 - -0.7
1,398,545 + Psest_1293 0.39 -0.4
1,398,545 + Psest_1293 0.39 +1.8

Or see this region's nucleotide sequence