Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1270

Experiment: Benzalkonium Chloride 0.002 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_1268 and Psest_1269 overlap by 13 nucleotidesPsest_1269 and Psest_1270 are separated by 11 nucleotidesPsest_1270 and Psest_1271 are separated by 55 nucleotidesPsest_1271 and Psest_1272 overlap by 15 nucleotidesPsest_1272 and Psest_1273 overlap by 4 nucleotides Psest_1268: Psest_1268 - Aspartate/tyrosine/aromatic aminotransferase, at 1,373,633 to 1,374,781 _1268 Psest_1269: Psest_1269 - Predicted amidohydrolase, at 1,374,769 to 1,375,563 _1269 Psest_1270: Psest_1270 - hypothetical protein, at 1,375,575 to 1,375,766 _1270 Psest_1271: Psest_1271 - Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family, at 1,375,822 to 1,376,355 _1271 Psest_1272: Psest_1272 - Protein of Unknown function (DUF2784)., at 1,376,341 to 1,376,712 _1272 Psest_1273: Psest_1273 - Predicted membrane protein, at 1,376,709 to 1,377,344 _1273 Position (kb) 1375 1376Strain fitness (log2 ratio) -3 -2 -1 0 1at 1374.768 kb on + strandat 1374.976 kb on + strand, within Psest_1269at 1374.976 kb on + strand, within Psest_1269at 1374.977 kb on - strand, within Psest_1269at 1374.977 kb on - strand, within Psest_1269at 1374.977 kb on - strand, within Psest_1269at 1375.016 kb on + strand, within Psest_1269at 1375.017 kb on - strand, within Psest_1269at 1375.106 kb on - strand, within Psest_1269at 1375.106 kb on - strand, within Psest_1269at 1375.106 kb on - strand, within Psest_1269at 1375.150 kb on + strand, within Psest_1269at 1375.150 kb on + strand, within Psest_1269at 1375.151 kb on - strand, within Psest_1269at 1375.274 kb on - strand, within Psest_1269at 1375.351 kb on + strand, within Psest_1269at 1375.352 kb on - strand, within Psest_1269at 1375.352 kb on - strand, within Psest_1269at 1375.567 kb on + strandat 1375.568 kb on - strandat 1375.612 kb on + strand, within Psest_1270at 1375.612 kb on + strand, within Psest_1270at 1375.612 kb on + strand, within Psest_1270at 1375.612 kb on + strand, within Psest_1270at 1375.613 kb on - strand, within Psest_1270at 1375.613 kb on - strand, within Psest_1270at 1375.640 kb on - strand, within Psest_1270at 1375.760 kb on + strandat 1375.852 kb on + strandat 1375.852 kb on + strandat 1375.852 kb on + strandat 1375.852 kb on + strandat 1376.122 kb on - strand, within Psest_1271at 1376.122 kb on - strand, within Psest_1271at 1376.280 kb on + strand, within Psest_1271at 1376.280 kb on + strand, within Psest_1271at 1376.280 kb on + strand, within Psest_1271at 1376.381 kb on + strand, within Psest_1272at 1376.381 kb on + strand, within Psest_1272at 1376.381 kb on + strand, within Psest_1272at 1376.381 kb on + strand, within Psest_1272at 1376.381 kb on + strand, within Psest_1272at 1376.381 kb on + strand, within Psest_1272at 1376.381 kb on + strand, within Psest_1272at 1376.381 kb on + strand, within Psest_1272at 1376.381 kb on + strand, within Psest_1272at 1376.381 kb on + strand, within Psest_1272at 1376.381 kb on + strand, within Psest_1272at 1376.381 kb on + strand, within Psest_1272at 1376.381 kb on + strand, within Psest_1272at 1376.381 kb on + strand, within Psest_1272at 1376.381 kb on + strand, within Psest_1272at 1376.381 kb on + strand, within Psest_1272at 1376.381 kb on + strand, within Psest_1272at 1376.385 kb on + strand, within Psest_1272at 1376.385 kb on + strand, within Psest_1272at 1376.385 kb on + strand, within Psest_1272at 1376.385 kb on + strand, within Psest_1272at 1376.423 kb on + strand, within Psest_1272at 1376.423 kb on + strand, within Psest_1272at 1376.423 kb on + strand, within Psest_1272at 1376.423 kb on + strand, within Psest_1272at 1376.423 kb on + strand, within Psest_1272at 1376.424 kb on - strand, within Psest_1272at 1376.424 kb on - strand, within Psest_1272at 1376.424 kb on - strand, within Psest_1272at 1376.471 kb on + strand, within Psest_1272at 1376.605 kb on + strand, within Psest_1272at 1376.605 kb on + strand, within Psest_1272at 1376.605 kb on + strand, within Psest_1272at 1376.606 kb on - strand, within Psest_1272at 1376.705 kb on + strandat 1376.706 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.002 mg/ml
remove
1,374,768 + -2.6
1,374,976 + Psest_1269 0.26 +0.1
1,374,976 + Psest_1269 0.26 -0.4
1,374,977 - Psest_1269 0.26 +0.6
1,374,977 - Psest_1269 0.26 +0.4
1,374,977 - Psest_1269 0.26 -0.9
1,375,016 + Psest_1269 0.31 -0.3
1,375,017 - Psest_1269 0.31 +0.5
1,375,106 - Psest_1269 0.42 -0.2
1,375,106 - Psest_1269 0.42 -0.2
1,375,106 - Psest_1269 0.42 +0.1
1,375,150 + Psest_1269 0.48 +0.4
1,375,150 + Psest_1269 0.48 +0.5
1,375,151 - Psest_1269 0.48 -0.4
1,375,274 - Psest_1269 0.64 -2.1
1,375,351 + Psest_1269 0.73 +0.3
1,375,352 - Psest_1269 0.73 +0.1
1,375,352 - Psest_1269 0.73 +0.3
1,375,567 + -0.3
1,375,568 - +0.5
1,375,612 + Psest_1270 0.19 -0.3
1,375,612 + Psest_1270 0.19 -0.1
1,375,612 + Psest_1270 0.19 +0.9
1,375,612 + Psest_1270 0.19 -1.4
1,375,613 - Psest_1270 0.20 +0.5
1,375,613 - Psest_1270 0.20 +0.6
1,375,640 - Psest_1270 0.34 +0.8
1,375,760 + +0.5
1,375,852 + -1.1
1,375,852 + -0.9
1,375,852 + +0.0
1,375,852 + +1.3
1,376,122 - Psest_1271 0.56 +1.0
1,376,122 - Psest_1271 0.56 -0.3
1,376,280 + Psest_1271 0.86 -0.1
1,376,280 + Psest_1271 0.86 -1.2
1,376,280 + Psest_1271 0.86 -0.4
1,376,381 + Psest_1272 0.11 +0.1
1,376,381 + Psest_1272 0.11 +0.6
1,376,381 + Psest_1272 0.11 +0.8
1,376,381 + Psest_1272 0.11 -2.3
1,376,381 + Psest_1272 0.11 +0.3
1,376,381 + Psest_1272 0.11 -0.1
1,376,381 + Psest_1272 0.11 -0.6
1,376,381 + Psest_1272 0.11 +0.6
1,376,381 + Psest_1272 0.11 -0.7
1,376,381 + Psest_1272 0.11 +0.2
1,376,381 + Psest_1272 0.11 -1.1
1,376,381 + Psest_1272 0.11 +0.0
1,376,381 + Psest_1272 0.11 -1.5
1,376,381 + Psest_1272 0.11 -0.4
1,376,381 + Psest_1272 0.11 +0.8
1,376,381 + Psest_1272 0.11 -0.0
1,376,381 + Psest_1272 0.11 -1.4
1,376,385 + Psest_1272 0.12 -0.1
1,376,385 + Psest_1272 0.12 +1.5
1,376,385 + Psest_1272 0.12 +0.2
1,376,385 + Psest_1272 0.12 -0.1
1,376,423 + Psest_1272 0.22 +1.1
1,376,423 + Psest_1272 0.22 -0.5
1,376,423 + Psest_1272 0.22 +0.2
1,376,423 + Psest_1272 0.22 -0.6
1,376,423 + Psest_1272 0.22 +0.4
1,376,424 - Psest_1272 0.22 -1.6
1,376,424 - Psest_1272 0.22 -1.5
1,376,424 - Psest_1272 0.22 +1.5
1,376,471 + Psest_1272 0.35 +0.6
1,376,605 + Psest_1272 0.71 +0.3
1,376,605 + Psest_1272 0.71 -3.4
1,376,605 + Psest_1272 0.71 +1.0
1,376,606 - Psest_1272 0.71 -0.4
1,376,705 + -1.1
1,376,706 - +0.2

Or see this region's nucleotide sequence