Experiment: Glucose defined media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3662 and Psest_3663 are separated by 1 nucleotides Psest_3663 and Psest_3664 overlap by 4 nucleotides Psest_3664 and Psest_3665 are separated by 90 nucleotides
Psest_3662: Psest_3662 - DnaJ-domain-containing proteins 1, at 3,824,733 to 3,825,500
_3662
Psest_3663: Psest_3663 - Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon), at 3,825,502 to 3,826,173
_3663
Psest_3664: Psest_3664 - Predicted phosphotransferase related to Ser/Thr protein kinases, at 3,826,170 to 3,827,228
_3664
Psest_3665: Psest_3665 - Organic solvent tolerance protein OstA, at 3,827,319 to 3,830,111
_3665
Position (kb)
3826
3827
3828 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3825.267 kb on - strand, within Psest_3662 at 3825.520 kb on + strand at 3825.520 kb on + strand at 3825.521 kb on - strand at 3825.521 kb on - strand at 3825.521 kb on - strand at 3825.521 kb on - strand at 3825.521 kb on - strand at 3826.256 kb on - strand at 3826.708 kb on + strand, within Psest_3664 at 3826.861 kb on + strand, within Psest_3664 at 3826.861 kb on + strand, within Psest_3664 at 3826.862 kb on - strand, within Psest_3664
Per-strain Table
Position Strand Gene LocusTag Fraction Glucose defined media remove 3,825,267 - Psest_3662 0.70 +0.2 3,825,520 + -0.5 3,825,520 + -1.1 3,825,521 - -0.3 3,825,521 - +0.2 3,825,521 - -0.1 3,825,521 - +1.6 3,825,521 - +0.4 3,826,256 - +0.4 3,826,708 + Psest_3664 0.51 -2.2 3,826,861 + Psest_3664 0.65 +1.9 3,826,861 + Psest_3664 0.65 -0.8 3,826,862 - Psest_3664 0.65 -1.7
Or see this region's nucleotide sequence