Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c12850

Experiment: D-Cellobiose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Cellobiose (C)
1,328,987	+		PGA1_c12840	0.37	+0.3
1,328,987	+		PGA1_c12840	0.37	+0.3
1,328,987	+		PGA1_c12840	0.37	-0.8
1,328,995	-		PGA1_c12840	0.37	+1.2
1,328,995	-		PGA1_c12840	0.37	+0.4
1,328,995	-		PGA1_c12840	0.37	+0.2
1,328,995	-		PGA1_c12840	0.37	-0.1
1,329,000	-		PGA1_c12840	0.38	-0.3
1,329,045	-		PGA1_c12840	0.41	-0.3
1,329,069	-		PGA1_c12840	0.43	+0.1
1,329,158	+		PGA1_c12840	0.50	-0.9
1,329,163	+		PGA1_c12840	0.51	-0.8
1,329,163	+		PGA1_c12840	0.51	+0.3
1,329,169	+		PGA1_c12840	0.51	-0.5
1,329,173	-		PGA1_c12840	0.51	-1.0
1,329,188	+		PGA1_c12840	0.53	-0.2
1,329,196	-		PGA1_c12840	0.53	-0.8
1,329,245	+		PGA1_c12840	0.57	-0.0
1,329,261	+		PGA1_c12840	0.59	-1.1
1,329,263	-		PGA1_c12840	0.59	-0.7
1,329,338	+		PGA1_c12840	0.65	+1.0
1,329,346	-		PGA1_c12840	0.65	+0.0
1,329,406	+		PGA1_c12840	0.70	-2.4
1,329,449	+		PGA1_c12840	0.74	-0.4
1,329,539	-		PGA1_c12840	0.81	+0.4
1,329,554	+		PGA1_c12840	0.82	+0.5
1,329,575	+		PGA1_c12840	0.84	+0.5
1,329,577	+		PGA1_c12840	0.84	-0.5
1,329,682	+				-0.7
1,329,683	-				-0.0
1,329,748	+				+0.5
1,329,750	+				-0.2
1,329,750	+				+1.3
1,329,758	-				-0.1
1,329,758	-				-0.7
1,329,758	-				+0.8
1,329,758	-				-0.2
1,329,758	-				-0.4
1,329,758	-				-0.4
1,329,758	-				+0.1
1,329,758	-				+0.0
1,329,832	+				-0.6
1,329,840	-				-0.0
1,329,885	+				-1.4
1,329,885	+				-0.4
1,329,893	+				+0.1
1,329,950	-				+0.3
1,329,950	-				-0.8
1,329,997	+				-0.4
1,330,042	+				-0.0
1,330,072	+		PGA1_c12850	0.12	-1.0
1,330,083	-		PGA1_c12850	0.12	+1.3
1,330,153	+		PGA1_c12850	0.17	-1.2
1,330,154	-		PGA1_c12850	0.17	-0.7
1,330,161	-		PGA1_c12850	0.18	-0.3
1,330,161	-		PGA1_c12850	0.18	+0.4
1,330,178	+		PGA1_c12850	0.19	+0.3
1,330,178	+		PGA1_c12850	0.19	+0.8
1,330,178	+		PGA1_c12850	0.19	-0.2
1,330,178	+		PGA1_c12850	0.19	+1.8
1,330,235	-		PGA1_c12850	0.23	-0.0
1,330,276	+		PGA1_c12850	0.26	-0.1
1,330,284	-		PGA1_c12850	0.26	+0.2
1,330,336	+		PGA1_c12850	0.30	-0.7
1,330,336	+		PGA1_c12850	0.30	+0.6
1,330,344	-		PGA1_c12850	0.30	-0.8
1,330,346	+		PGA1_c12850	0.30	+0.0
1,330,353	+		PGA1_c12850	0.31	-0.3
1,330,353	+		PGA1_c12850	0.31	-0.4
1,330,354	-		PGA1_c12850	0.31	-1.0
1,330,426	-		PGA1_c12850	0.36	-0.3
1,330,429	-		PGA1_c12850	0.36	+0.6
1,330,476	+		PGA1_c12850	0.39	+0.5
1,330,481	+		PGA1_c12850	0.40	+0.2
1,330,481	+		PGA1_c12850	0.40	+0.7
1,330,493	+		PGA1_c12850	0.41	-0.1
1,330,635	+		PGA1_c12850	0.50	-0.4
1,330,658	+		PGA1_c12850	0.52	-0.3
1,330,675	-		PGA1_c12850	0.53	-0.8
1,330,703	+		PGA1_c12850	0.55	+0.3
1,330,703	+		PGA1_c12850	0.55	-0.6
1,330,711	-		PGA1_c12850	0.56	-1.6
1,330,711	-		PGA1_c12850	0.56	+0.1
1,330,779	-		PGA1_c12850	0.60	-0.4
1,330,784	+		PGA1_c12850	0.61	+0.2
1,330,792	+		PGA1_c12850	0.61	-1.7
1,330,792	+		PGA1_c12850	0.61	+0.4
1,330,792	+		PGA1_c12850	0.61	-0.1
1,330,792	+		PGA1_c12850	0.61	-0.8
1,330,795	-		PGA1_c12850	0.61	-0.3
1,330,800	-		PGA1_c12850	0.62	+0.1
1,330,800	-		PGA1_c12850	0.62	+0.1
1,330,868	+		PGA1_c12850	0.66	+0.0
1,330,884	-		PGA1_c12850	0.67	+0.8
1,330,945	-		PGA1_c12850	0.72	-0.3
1,330,945	-		PGA1_c12850	0.72	-1.1
1,330,952	+		PGA1_c12850	0.72	+0.2
1,331,039	-		PGA1_c12850	0.78	+0.7
1,331,046	+		PGA1_c12850	0.79	-0.3
1,331,046	+		PGA1_c12850	0.79	-0.6
1,331,046	+		PGA1_c12850	0.79	+0.2
1,331,054	-		PGA1_c12850	0.79	+0.6
1,331,054	-		PGA1_c12850	0.79	+0.3
1,331,054	-		PGA1_c12850	0.79	-0.4
1,331,059	-		PGA1_c12850	0.79	-0.5
1,331,093	+		PGA1_c12850	0.82	+0.4
1,331,159	+		PGA1_c12850	0.86	-0.5
1,331,159	+		PGA1_c12850	0.86	-0.7
1,331,159	+		PGA1_c12850	0.86	-0.2
1,331,159	+		PGA1_c12850	0.86	+0.4
1,331,159	+		PGA1_c12850	0.86	+0.6
1,331,166	+		PGA1_c12850	0.87	+0.4
1,331,167	-		PGA1_c12850	0.87	-0.7
1,331,167	-		PGA1_c12850	0.87	-0.7
1,331,167	-		PGA1_c12850	0.87	-0.3
1,331,167	-		PGA1_c12850	0.87	-0.4
1,331,167	-		PGA1_c12850	0.87	-0.3
1,331,167	-		PGA1_c12850	0.87	-0.1
1,331,167	-		PGA1_c12850	0.87	-0.1
1,331,174	-		PGA1_c12850	0.87	-0.8
1,331,174	-		PGA1_c12850	0.87	-0.3
1,331,174	-		PGA1_c12850	0.87	-0.9
1,331,176	+		PGA1_c12850	0.87	+0.2
1,331,176	+		PGA1_c12850	0.87	+0.8
1,331,176	+		PGA1_c12850	0.87	+0.2
1,331,176	+		PGA1_c12850	0.87	+0.2
1,331,179	-		PGA1_c12850	0.88	+0.9
1,331,184	-		PGA1_c12850	0.88	+0.3
1,331,184	-		PGA1_c12850	0.88	-0.8
1,331,184	-		PGA1_c12850	0.88	-1.3
1,331,262	+				-0.9
1,331,270	-				-0.0
1,331,270	-				-0.7
1,331,360	-				+0.1
1,331,514	-		PGA1_c12860	0.11	+0.3
1,331,544	-		PGA1_c12860	0.15	+0.7
1,331,547	+		PGA1_c12860	0.15	+0.5
1,331,555	+		PGA1_c12860	0.16	+0.6
1,331,564	-		PGA1_c12860	0.17	+0.4
1,331,606	+		PGA1_c12860	0.22	+0.0
1,331,732	+		PGA1_c12860	0.37	-0.5
1,331,740	+		PGA1_c12860	0.38	+0.1
1,331,785	-		PGA1_c12860	0.44	-0.2
1,331,815	-		PGA1_c12860	0.47	-0.1
1,331,884	+		PGA1_c12860	0.55	-0.4
1,331,894	+		PGA1_c12860	0.57	-0.0
1,331,902	-		PGA1_c12860	0.58	-0.3
1,331,915	+		PGA1_c12860	0.59	+0.3
1,331,920	+		PGA1_c12860	0.60	-0.5
1,331,923	-		PGA1_c12860	0.60	-0.2
1,331,979	-		PGA1_c12860	0.67	-0.3
1,331,979	-		PGA1_c12860	0.67	-0.5
1,331,984	+		PGA1_c12860	0.67	-0.9
1,332,013	-		PGA1_c12860	0.71	-0.8
1,332,042	+		PGA1_c12860	0.74	+0.0
1,332,133	+		PGA1_c12860	0.85	-0.7
1,332,141	+		PGA1_c12860	0.86	+0.0
1,332,229	+				+0.4
1,332,237	-				-0.5
1,332,240	+				+0.9
1,332,246	+				+0.2
1,332,248	-				-0.6
1,332,254	+				+0.0
1,332,264	-				+0.7
1,332,274	-				+1.2
1,332,308	+				-0.9