Strain Fitness in Shewanella amazonensis SB2B around Sama_3379

Experiment: Chloride 700 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Chloride 700 mM
4,006,791	+		Sama_3377	0.87	-1.2
4,006,791	+		Sama_3377	0.87	+2.5
4,006,791	+		Sama_3377	0.87	-1.6
4,006,791	+		Sama_3377	0.87	-0.8
4,006,792	-		Sama_3377	0.87	+0.6
4,006,792	-		Sama_3377	0.87	-0.8
4,006,936	+				-0.7
4,006,936	+				-0.0
4,006,936	+				+0.2
4,006,936	+				-0.7
4,006,936	+				-0.3
4,006,937	-				-0.4
4,006,937	-				+0.3
4,006,937	-				+0.8
4,006,937	-				+0.2
4,006,937	-				-2.4
4,006,937	-				-0.8
4,006,937	-				-0.5
4,006,937	-				-0.4
4,006,969	+		Sama_3378	0.12	+0.4
4,006,969	+		Sama_3378	0.12	-0.9
4,006,969	+		Sama_3378	0.12	-0.1
4,006,969	+		Sama_3378	0.12	+1.0
4,006,969	+		Sama_3378	0.12	-1.4
4,006,969	+		Sama_3378	0.12	+0.5
4,006,969	+		Sama_3378	0.12	-0.7
4,006,969	+		Sama_3378	0.12	+0.1
4,006,969	+		Sama_3378	0.12	+0.6
4,006,969	+		Sama_3378	0.12	-1.1
4,006,969	+		Sama_3378	0.12	-0.7
4,006,969	+		Sama_3378	0.12	+0.3
4,006,969	+		Sama_3378	0.12	+0.9
4,006,970	-		Sama_3378	0.12	-0.1
4,006,970	-		Sama_3378	0.12	+0.6
4,006,970	-		Sama_3378	0.12	+1.9
4,006,970	-		Sama_3378	0.12	-1.7
4,006,970	-		Sama_3378	0.12	+1.2
4,006,970	-		Sama_3378	0.12	+1.8
4,006,970	-		Sama_3378	0.12	+0.1
4,006,970	-		Sama_3378	0.12	+1.1
4,006,997	+		Sama_3378	0.15	+0.2
4,006,997	+		Sama_3378	0.15	+0.3
4,007,010	+		Sama_3378	0.17	+1.1
4,007,011	-		Sama_3378	0.17	-0.8
4,007,011	-		Sama_3378	0.17	+0.0
4,007,029	+		Sama_3378	0.19	+0.5
4,007,029	+		Sama_3378	0.19	+0.8
4,007,029	+		Sama_3378	0.19	+1.2
4,007,029	+		Sama_3378	0.19	+0.0
4,007,030	-		Sama_3378	0.19	+0.9
4,007,225	+		Sama_3378	0.43	+0.2
4,007,226	-		Sama_3378	0.43	-0.7
4,007,226	-		Sama_3378	0.43	+0.2
4,007,226	-		Sama_3378	0.43	+0.5
4,007,226	-		Sama_3378	0.43	+1.8
4,007,250	+		Sama_3378	0.46	-2.2
4,007,251	-		Sama_3378	0.46	-0.1
4,007,256	-		Sama_3378	0.47	+1.4
4,007,256	-		Sama_3378	0.47	+1.5
4,007,256	-		Sama_3378	0.47	+0.3
4,007,283	+		Sama_3378	0.50	-0.3
4,007,283	+		Sama_3378	0.50	-2.2
4,007,283	+		Sama_3378	0.50	+0.5
4,007,283	+		Sama_3378	0.50	-0.0
4,007,284	-		Sama_3378	0.50	-1.0
4,007,311	+		Sama_3378	0.53	-0.2
4,007,311	+		Sama_3378	0.53	+0.4
4,007,311	+		Sama_3378	0.53	+0.1
4,007,311	+		Sama_3378	0.53	-0.9
4,007,311	+		Sama_3378	0.53	+0.4
4,007,311	+		Sama_3378	0.53	-0.9
4,007,312	-		Sama_3378	0.53	-1.2
4,007,312	-		Sama_3378	0.53	-0.2
4,007,312	-		Sama_3378	0.53	-0.0
4,007,312	-		Sama_3378	0.53	-0.2
4,007,312	-		Sama_3378	0.53	+0.6
4,007,312	-		Sama_3378	0.53	+1.4
4,007,312	-		Sama_3378	0.53	-0.5
4,007,313	+		Sama_3378	0.54	-0.7
4,007,313	+		Sama_3378	0.54	+0.5
4,007,313	+		Sama_3378	0.54	-0.6
4,007,314	-		Sama_3378	0.54	-1.2
4,007,314	-		Sama_3378	0.54	-1.1
4,007,360	+		Sama_3378	0.59	+1.6
4,007,360	+		Sama_3378	0.59	-0.6
4,007,360	+		Sama_3378	0.59	-2.4
4,007,361	-		Sama_3378	0.59	+1.8
4,007,374	-		Sama_3378	0.61	-0.6
4,007,385	+		Sama_3378	0.62	-2.4
4,007,385	+		Sama_3378	0.62	+0.2
4,007,385	+		Sama_3378	0.62	-0.8
4,007,385	+		Sama_3378	0.62	+0.6
4,007,386	-		Sama_3378	0.62	-2.4
4,007,386	-		Sama_3378	0.62	-0.6
4,007,386	-		Sama_3378	0.62	+0.4
4,007,426	+		Sama_3378	0.67	-1.2
4,007,426	+		Sama_3378	0.67	+0.9
4,007,426	+		Sama_3378	0.67	+0.3
4,007,426	+		Sama_3378	0.67	-0.5
4,007,426	+		Sama_3378	0.67	-0.5
4,007,480	+		Sama_3378	0.74	-0.2
4,007,480	+		Sama_3378	0.74	+0.8
4,007,480	+		Sama_3378	0.74	-0.3
4,007,480	+		Sama_3378	0.74	+0.1
4,007,480	+		Sama_3378	0.74	+0.6
4,007,480	+		Sama_3378	0.74	-0.6
4,007,480	+		Sama_3378	0.74	+1.6
4,007,480	+		Sama_3378	0.74	-0.5
4,007,480	+		Sama_3378	0.74	-0.1
4,007,481	-		Sama_3378	0.74	-0.1
4,007,481	-		Sama_3378	0.74	+0.2
4,007,481	-		Sama_3378	0.74	-0.0
4,007,481	-		Sama_3378	0.74	+1.2
4,007,481	-		Sama_3378	0.74	-0.1
4,007,481	-		Sama_3378	0.74	-0.5
4,007,481	-		Sama_3378	0.74	-0.3
4,007,571	-		Sama_3378	0.85	-2.5
4,007,602	+		Sama_3378	0.88	+0.4
4,007,602	+		Sama_3378	0.88	-0.3
4,007,602	+		Sama_3378	0.88	-2.2
4,007,603	-		Sama_3378	0.89	+0.5
4,007,603	-		Sama_3378	0.89	+0.6
4,007,668	+				+0.2
4,007,670	+				-0.9
4,007,687	+				-0.1
4,007,701	+				+0.3
4,007,701	+				-0.7
4,007,701	+				-1.2
4,007,701	+				-1.2
4,007,702	-				-0.5
4,007,702	-				+0.6
4,007,702	-				+0.0
4,007,702	-				-1.3
4,007,767	+		Sama_3379	0.28	+0.9
4,007,768	-		Sama_3379	0.28	-0.6
4,007,840	+		Sama_3379	0.56	+0.0
4,007,843	+		Sama_3379	0.57	+1.2
4,007,844	-		Sama_3379	0.57	+0.4
4,007,844	-		Sama_3379	0.57	+0.4
4,007,860	+		Sama_3379	0.64	-0.5
4,007,860	+		Sama_3379	0.64	-0.4
4,007,861	-		Sama_3379	0.64	+0.1
4,007,861	-		Sama_3379	0.64	-1.0
4,007,861	-		Sama_3379	0.64	-0.3
4,007,902	-		Sama_3379	0.80	-1.2
4,007,928	-		Sama_3379	0.90	-0.1
4,007,952	+				-1.0
4,007,952	+				-0.0
4,007,952	+				+0.3
4,007,953	-				-0.3
4,007,953	-				+0.1
4,007,953	-				-0.4
4,007,958	+				-0.5
4,007,958	+				-2.0
4,007,958	+				+1.5
4,007,958	+				+0.8
4,008,055	+		Sama_3380	0.39	-0.7
4,008,055	+		Sama_3380	0.39	-0.3
4,008,151	+		Sama_3380	0.77	+0.2
4,008,155	+		Sama_3380	0.79	+0.1
4,008,155	+		Sama_3380	0.79	-0.0
4,008,155	+		Sama_3380	0.79	+0.6
4,008,215	+				-1.4
4,008,215	+				-1.2
4,008,216	-				-0.3
4,008,216	-				-0.5
4,008,216	-				-0.4
4,008,224	-				-0.3
4,008,249	+				-0.5
4,008,279	+		Sama_3381	0.13	+0.4
4,008,279	+		Sama_3381	0.13	-1.2
4,008,280	-		Sama_3381	0.13	-0.0
4,008,293	+		Sama_3381	0.16	-1.0
4,008,340	+		Sama_3381	0.24	-1.5
4,008,341	-		Sama_3381	0.24	+1.5
4,008,341	-		Sama_3381	0.24	-0.6
4,008,395	+		Sama_3381	0.34	-0.5
4,008,438	+		Sama_3381	0.42	-2.0
4,008,439	-		Sama_3381	0.42	-1.4
4,008,559	+		Sama_3381	0.64	-0.8
4,008,559	+		Sama_3381	0.64	-1.2
4,008,559	+		Sama_3381	0.64	-2.2
4,008,559	+		Sama_3381	0.64	-2.4
4,008,560	-		Sama_3381	0.64	-0.0
4,008,560	-		Sama_3381	0.64	+1.4
4,008,560	-		Sama_3381	0.64	-0.4
4,008,565	-		Sama_3381	0.65	+0.1
4,008,608	-		Sama_3381	0.73	-0.2
4,008,628	-		Sama_3381	0.77	+0.6
4,008,628	-		Sama_3381	0.77	+0.7
4,008,667	-		Sama_3381	0.84	+0.0
4,008,667	-		Sama_3381	0.84	+1.6
4,008,667	-		Sama_3381	0.84	+0.6
4,008,667	-		Sama_3381	0.84	+0.0
4,008,667	-		Sama_3381	0.84	-0.1
4,008,667	-		Sama_3381	0.84	+1.0
4,008,667	-		Sama_3381	0.84	+0.1
4,008,667	-		Sama_3381	0.84	-0.3
4,008,685	-		Sama_3381	0.87	-1.2
4,008,685	-		Sama_3381	0.87	+0.5
4,008,693	-		Sama_3381	0.89	+0.8
4,008,723	+				-0.9
4,008,734	+				-0.5
4,008,789	+				+0.2
4,008,789	+				+0.8
4,008,789	+				-0.8
4,008,790	-				+1.8
4,008,790	-				+0.3
4,008,829	+				-2.0
4,008,829	+				-0.5
4,008,830	-				+0.3
4,008,869	+				-1.7