Experiment: Chloride 700 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dipZ and Sama_0539 overlap by 4 nucleotides Sama_0539 and Sama_0540 are separated by 212 nucleotides Sama_0540 and Sama_0541 are separated by 62 nucleotides
Sama_0538: dipZ - thiol:disulfide interchange protein precursor (RefSeq), at 663,245 to 665,068
dipZ
Sama_0539: Sama_0539 - periplasmic divalent cation tolerance protein CutA (RefSeq), at 665,065 to 665,397
_0539
Sama_0540: Sama_0540 - FxsA cytoplasmic membrane protein (RefSeq), at 665,610 to 666,200
_0540
Sama_0541: Sama_0541 - serine/threonine protein kinase, putative (RefSeq), at 666,263 to 668,083
_0541
Position (kb) 665
666
667 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 664.706 kb on - strand, within dipZ at 664.749 kb on + strand, within dipZ at 664.749 kb on + strand, within dipZ at 664.749 kb on + strand, within dipZ at 664.749 kb on + strand, within dipZ at 664.750 kb on - strand, within dipZ at 664.750 kb on - strand, within dipZ at 664.750 kb on - strand, within dipZ at 664.756 kb on - strand, within dipZ at 664.756 kb on - strand, within dipZ at 664.756 kb on - strand, within dipZ at 664.869 kb on + strand, within dipZ at 664.869 kb on + strand, within dipZ at 664.870 kb on - strand, within dipZ at 664.872 kb on + strand, within dipZ at 664.872 kb on + strand, within dipZ at 664.873 kb on - strand, within dipZ at 665.028 kb on - strand at 665.041 kb on + strand at 665.041 kb on + strand at 665.042 kb on - strand at 665.042 kb on - strand at 665.077 kb on - strand at 665.077 kb on - strand at 665.077 kb on - strand at 665.077 kb on - strand at 665.134 kb on - strand, within Sama_0539 at 665.151 kb on - strand, within Sama_0539 at 665.189 kb on + strand, within Sama_0539 at 665.189 kb on + strand, within Sama_0539 at 665.190 kb on - strand, within Sama_0539 at 665.190 kb on - strand, within Sama_0539 at 665.190 kb on - strand, within Sama_0539 at 665.190 kb on - strand, within Sama_0539 at 665.216 kb on - strand, within Sama_0539 at 665.216 kb on - strand, within Sama_0539 at 665.216 kb on - strand, within Sama_0539 at 665.220 kb on + strand, within Sama_0539 at 665.222 kb on + strand, within Sama_0539 at 665.223 kb on - strand, within Sama_0539 at 665.258 kb on + strand, within Sama_0539 at 665.259 kb on - strand, within Sama_0539 at 665.259 kb on - strand, within Sama_0539 at 665.259 kb on - strand, within Sama_0539 at 665.259 kb on - strand, within Sama_0539 at 665.374 kb on - strand at 665.375 kb on + strand at 665.375 kb on + strand at 665.375 kb on + strand at 665.375 kb on + strand at 665.375 kb on + strand at 665.375 kb on + strand at 665.375 kb on + strand at 665.375 kb on + strand at 665.375 kb on + strand at 665.375 kb on + strand at 665.375 kb on + strand at 665.375 kb on + strand at 665.375 kb on + strand at 665.375 kb on + strand at 665.375 kb on + strand at 665.376 kb on - strand at 665.376 kb on - strand at 665.376 kb on - strand at 665.376 kb on - strand at 665.376 kb on - strand at 665.376 kb on - strand at 665.376 kb on - strand at 665.376 kb on - strand at 665.376 kb on - strand at 665.376 kb on - strand at 665.376 kb on - strand at 665.376 kb on - strand at 665.415 kb on - strand at 665.426 kb on - strand at 665.426 kb on - strand at 665.426 kb on - strand at 665.426 kb on - strand at 665.434 kb on + strand at 665.434 kb on + strand at 665.434 kb on + strand at 665.434 kb on + strand at 665.434 kb on + strand at 665.434 kb on + strand at 665.434 kb on + strand at 665.434 kb on + strand at 665.435 kb on - strand at 665.435 kb on - strand at 665.435 kb on - strand at 665.435 kb on - strand at 665.439 kb on + strand at 665.439 kb on + strand at 665.439 kb on + strand at 665.440 kb on - strand at 665.445 kb on + strand at 665.468 kb on + strand at 665.468 kb on + strand at 665.468 kb on + strand at 665.469 kb on - strand at 665.469 kb on - strand at 665.469 kb on - strand at 665.493 kb on + strand at 665.493 kb on + strand at 665.494 kb on - strand at 665.494 kb on - strand at 665.509 kb on + strand at 665.548 kb on - strand at 665.579 kb on + strand at 665.579 kb on + strand at 665.596 kb on + strand at 665.597 kb on - strand at 665.731 kb on + strand, within Sama_0540 at 665.731 kb on + strand, within Sama_0540 at 665.731 kb on + strand, within Sama_0540 at 665.731 kb on + strand, within Sama_0540 at 665.732 kb on - strand, within Sama_0540 at 665.734 kb on + strand, within Sama_0540 at 665.734 kb on + strand, within Sama_0540 at 665.734 kb on + strand, within Sama_0540 at 665.735 kb on - strand, within Sama_0540 at 665.735 kb on - strand, within Sama_0540 at 665.813 kb on + strand, within Sama_0540 at 665.814 kb on - strand, within Sama_0540 at 665.828 kb on - strand, within Sama_0540 at 665.869 kb on + strand, within Sama_0540 at 666.164 kb on + strand at 666.164 kb on + strand at 666.164 kb on + strand at 666.164 kb on + strand at 666.164 kb on + strand at 666.164 kb on + strand at 666.165 kb on - strand at 666.165 kb on - strand at 666.278 kb on + strand at 666.278 kb on + strand at 666.279 kb on - strand at 666.279 kb on - strand at 666.301 kb on - strand at 666.365 kb on - strand at 666.395 kb on - strand at 666.454 kb on + strand, within Sama_0541 at 666.455 kb on - strand, within Sama_0541 at 666.455 kb on - strand, within Sama_0541 at 666.464 kb on + strand, within Sama_0541 at 666.464 kb on + strand, within Sama_0541 at 666.464 kb on + strand, within Sama_0541 at 666.464 kb on + strand, within Sama_0541 at 666.465 kb on - strand, within Sama_0541 at 666.465 kb on - strand, within Sama_0541 at 666.465 kb on - strand, within Sama_0541 at 666.468 kb on + strand, within Sama_0541 at 666.469 kb on - strand, within Sama_0541 at 666.511 kb on + strand, within Sama_0541 at 666.512 kb on - strand, within Sama_0541 at 666.512 kb on - strand, within Sama_0541 at 666.536 kb on + strand, within Sama_0541 at 666.571 kb on + strand, within Sama_0541 at 666.610 kb on - strand, within Sama_0541 at 666.644 kb on + strand, within Sama_0541 at 666.644 kb on + strand, within Sama_0541 at 666.644 kb on + strand, within Sama_0541 at 666.644 kb on + strand, within Sama_0541 at 666.644 kb on + strand, within Sama_0541 at 666.644 kb on + strand, within Sama_0541 at 666.645 kb on - strand, within Sama_0541 at 666.645 kb on - strand, within Sama_0541 at 666.665 kb on + strand, within Sama_0541 at 666.665 kb on + strand, within Sama_0541 at 666.666 kb on - strand, within Sama_0541 at 666.666 kb on - strand, within Sama_0541 at 666.666 kb on - strand, within Sama_0541 at 666.773 kb on + strand, within Sama_0541 at 666.773 kb on + strand, within Sama_0541 at 666.774 kb on - strand, within Sama_0541 at 666.774 kb on - strand, within Sama_0541 at 666.774 kb on - strand, within Sama_0541 at 666.862 kb on + strand, within Sama_0541 at 666.862 kb on + strand, within Sama_0541 at 666.862 kb on + strand, within Sama_0541 at 666.866 kb on + strand, within Sama_0541 at 666.866 kb on + strand, within Sama_0541 at 666.867 kb on - strand, within Sama_0541 at 666.867 kb on - strand, within Sama_0541 at 666.906 kb on - strand, within Sama_0541 at 666.913 kb on - strand, within Sama_0541 at 666.940 kb on + strand, within Sama_0541 at 666.941 kb on - strand, within Sama_0541 at 666.941 kb on - strand, within Sama_0541 at 666.984 kb on + strand, within Sama_0541 at 666.985 kb on - strand, within Sama_0541 at 666.987 kb on + strand, within Sama_0541 at 666.987 kb on + strand, within Sama_0541 at 666.987 kb on + strand, within Sama_0541 at 666.987 kb on + strand, within Sama_0541 at 666.987 kb on + strand, within Sama_0541 at 666.987 kb on + strand, within Sama_0541 at 666.987 kb on + strand, within Sama_0541 at 666.988 kb on - strand, within Sama_0541 at 666.988 kb on - strand, within Sama_0541 at 666.988 kb on - strand, within Sama_0541 at 666.988 kb on - strand, within Sama_0541 at 666.988 kb on - strand, within Sama_0541 at 666.988 kb on - strand, within Sama_0541 at 666.988 kb on - strand, within Sama_0541 at 666.991 kb on + strand, within Sama_0541 at 666.991 kb on + strand, within Sama_0541 at 666.992 kb on - strand, within Sama_0541 at 666.992 kb on - strand, within Sama_0541 at 666.992 kb on - strand, within Sama_0541 at 666.992 kb on - strand, within Sama_0541 at 666.992 kb on - strand, within Sama_0541 at 667.068 kb on + strand, within Sama_0541 at 667.068 kb on + strand, within Sama_0541 at 667.068 kb on + strand, within Sama_0541 at 667.068 kb on + strand, within Sama_0541 at 667.069 kb on - strand, within Sama_0541 at 667.069 kb on - strand, within Sama_0541 at 667.091 kb on - strand, within Sama_0541 at 667.177 kb on + strand, within Sama_0541 at 667.177 kb on + strand, within Sama_0541 at 667.177 kb on + strand, within Sama_0541 at 667.177 kb on + strand, within Sama_0541 at 667.178 kb on - strand, within Sama_0541 at 667.191 kb on + strand, within Sama_0541 at 667.192 kb on - strand, within Sama_0541 at 667.192 kb on - strand, within Sama_0541 at 667.192 kb on - strand, within Sama_0541 at 667.192 kb on - strand, within Sama_0541 at 667.192 kb on - strand, within Sama_0541
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 700 mM remove 664,706 - dipZ Sama_0538 0.80 -2.5 664,749 + dipZ Sama_0538 0.82 -1.3 664,749 + dipZ Sama_0538 0.82 +0.7 664,749 + dipZ Sama_0538 0.82 -0.7 664,749 + dipZ Sama_0538 0.82 -0.3 664,750 - dipZ Sama_0538 0.83 -1.7 664,750 - dipZ Sama_0538 0.83 -2.3 664,750 - dipZ Sama_0538 0.83 -0.7 664,756 - dipZ Sama_0538 0.83 -0.5 664,756 - dipZ Sama_0538 0.83 -0.3 664,756 - dipZ Sama_0538 0.83 -1.3 664,869 + dipZ Sama_0538 0.89 -2.8 664,869 + dipZ Sama_0538 0.89 -2.5 664,870 - dipZ Sama_0538 0.89 -2.3 664,872 + dipZ Sama_0538 0.89 +0.7 664,872 + dipZ Sama_0538 0.89 -2.1 664,873 - dipZ Sama_0538 0.89 +0.1 665,028 - -0.4 665,041 + -0.1 665,041 + -0.6 665,042 - -0.9 665,042 - -2.1 665,077 - -1.5 665,077 - -0.9 665,077 - -0.3 665,077 - -1.1 665,134 - Sama_0539 0.21 -0.5 665,151 - Sama_0539 0.26 +0.7 665,189 + Sama_0539 0.37 +1.3 665,189 + Sama_0539 0.37 -1.9 665,190 - Sama_0539 0.38 -0.6 665,190 - Sama_0539 0.38 -0.2 665,190 - Sama_0539 0.38 +0.4 665,190 - Sama_0539 0.38 +0.6 665,216 - Sama_0539 0.45 -0.4 665,216 - Sama_0539 0.45 +0.4 665,216 - Sama_0539 0.45 +0.7 665,220 + Sama_0539 0.47 -0.4 665,222 + Sama_0539 0.47 +0.8 665,223 - Sama_0539 0.47 -0.2 665,258 + Sama_0539 0.58 +1.0 665,259 - Sama_0539 0.58 +0.8 665,259 - Sama_0539 0.58 -0.3 665,259 - Sama_0539 0.58 -2.4 665,259 - Sama_0539 0.58 +0.1 665,374 - -0.0 665,375 + -0.1 665,375 + -0.7 665,375 + +0.1 665,375 + -1.7 665,375 + -0.1 665,375 + +0.3 665,375 + +0.4 665,375 + -0.7 665,375 + +0.7 665,375 + -0.2 665,375 + -0.9 665,375 + -1.3 665,375 + -1.7 665,375 + +1.4 665,375 + -1.1 665,376 - -0.0 665,376 - -0.8 665,376 - -1.3 665,376 - -0.7 665,376 - +0.0 665,376 - -1.1 665,376 - -0.7 665,376 - -0.4 665,376 - +0.7 665,376 - +0.2 665,376 - -3.3 665,376 - +0.4 665,415 - +1.1 665,426 - +0.3 665,426 - +1.1 665,426 - -0.4 665,426 - -0.6 665,434 + +0.3 665,434 + +0.1 665,434 + +0.9 665,434 + +1.0 665,434 + -0.3 665,434 + -0.9 665,434 + -0.6 665,434 + +0.1 665,435 - -2.1 665,435 - -0.7 665,435 - +0.0 665,435 - -0.6 665,439 + -0.0 665,439 + +0.3 665,439 + +0.8 665,440 - -0.1 665,445 + +0.3 665,468 + +1.0 665,468 + +0.6 665,468 + +1.0 665,469 - -1.3 665,469 - +0.3 665,469 - -1.7 665,493 + +0.1 665,493 + +0.7 665,494 - +3.1 665,494 - +0.2 665,509 + +0.1 665,548 - -0.9 665,579 + +0.1 665,579 + -0.3 665,596 + +0.8 665,597 - -0.3 665,731 + Sama_0540 0.20 +3.3 665,731 + Sama_0540 0.20 -0.5 665,731 + Sama_0540 0.20 -0.3 665,731 + Sama_0540 0.20 -0.2 665,732 - Sama_0540 0.21 +0.2 665,734 + Sama_0540 0.21 -2.4 665,734 + Sama_0540 0.21 -0.3 665,734 + Sama_0540 0.21 -0.0 665,735 - Sama_0540 0.21 -0.6 665,735 - Sama_0540 0.21 -0.7 665,813 + Sama_0540 0.34 -1.1 665,814 - Sama_0540 0.35 -0.1 665,828 - Sama_0540 0.37 -0.3 665,869 + Sama_0540 0.44 -1.4 666,164 + -0.0 666,164 + +0.8 666,164 + +0.3 666,164 + +0.7 666,164 + +2.4 666,164 + -0.6 666,165 - -2.4 666,165 - +0.1 666,278 + -0.2 666,278 + +0.5 666,279 - +0.3 666,279 - -0.9 666,301 - +0.1 666,365 - -0.2 666,395 - -1.4 666,454 + Sama_0541 0.10 +1.5 666,455 - Sama_0541 0.11 -0.2 666,455 - Sama_0541 0.11 +0.6 666,464 + Sama_0541 0.11 -0.1 666,464 + Sama_0541 0.11 -0.7 666,464 + Sama_0541 0.11 -1.1 666,464 + Sama_0541 0.11 -0.2 666,465 - Sama_0541 0.11 +0.1 666,465 - Sama_0541 0.11 +0.1 666,465 - Sama_0541 0.11 +0.0 666,468 + Sama_0541 0.11 -0.9 666,469 - Sama_0541 0.11 -2.0 666,511 + Sama_0541 0.14 +0.2 666,512 - Sama_0541 0.14 +0.4 666,512 - Sama_0541 0.14 +0.6 666,536 + Sama_0541 0.15 -2.1 666,571 + Sama_0541 0.17 -0.2 666,610 - Sama_0541 0.19 -0.7 666,644 + Sama_0541 0.21 +0.5 666,644 + Sama_0541 0.21 +1.3 666,644 + Sama_0541 0.21 +0.5 666,644 + Sama_0541 0.21 +0.4 666,644 + Sama_0541 0.21 +0.7 666,644 + Sama_0541 0.21 +0.0 666,645 - Sama_0541 0.21 +0.2 666,645 - Sama_0541 0.21 +0.7 666,665 + Sama_0541 0.22 +0.2 666,665 + Sama_0541 0.22 -0.0 666,666 - Sama_0541 0.22 -1.8 666,666 - Sama_0541 0.22 -0.1 666,666 - Sama_0541 0.22 +1.0 666,773 + Sama_0541 0.28 +0.8 666,773 + Sama_0541 0.28 +0.3 666,774 - Sama_0541 0.28 -0.6 666,774 - Sama_0541 0.28 +0.9 666,774 - Sama_0541 0.28 +0.3 666,862 + Sama_0541 0.33 +1.9 666,862 + Sama_0541 0.33 -1.5 666,862 + Sama_0541 0.33 +0.2 666,866 + Sama_0541 0.33 +0.0 666,866 + Sama_0541 0.33 -0.1 666,867 - Sama_0541 0.33 -0.3 666,867 - Sama_0541 0.33 -1.1 666,906 - Sama_0541 0.35 +0.1 666,913 - Sama_0541 0.36 +0.7 666,940 + Sama_0541 0.37 -0.2 666,941 - Sama_0541 0.37 +0.2 666,941 - Sama_0541 0.37 +0.8 666,984 + Sama_0541 0.40 +0.7 666,985 - Sama_0541 0.40 -0.7 666,987 + Sama_0541 0.40 +1.1 666,987 + Sama_0541 0.40 -0.6 666,987 + Sama_0541 0.40 +0.9 666,987 + Sama_0541 0.40 -0.3 666,987 + Sama_0541 0.40 -0.9 666,987 + Sama_0541 0.40 -0.5 666,987 + Sama_0541 0.40 -0.1 666,988 - Sama_0541 0.40 +0.7 666,988 - Sama_0541 0.40 +0.8 666,988 - Sama_0541 0.40 -0.4 666,988 - Sama_0541 0.40 +0.4 666,988 - Sama_0541 0.40 +0.6 666,988 - Sama_0541 0.40 +0.2 666,988 - Sama_0541 0.40 +0.5 666,991 + Sama_0541 0.40 +0.2 666,991 + Sama_0541 0.40 +0.3 666,992 - Sama_0541 0.40 -0.5 666,992 - Sama_0541 0.40 -0.5 666,992 - Sama_0541 0.40 -0.3 666,992 - Sama_0541 0.40 +0.7 666,992 - Sama_0541 0.40 -0.3 667,068 + Sama_0541 0.44 -0.6 667,068 + Sama_0541 0.44 -1.2 667,068 + Sama_0541 0.44 +0.9 667,068 + Sama_0541 0.44 +0.3 667,069 - Sama_0541 0.44 +0.3 667,069 - Sama_0541 0.44 -0.1 667,091 - Sama_0541 0.45 +1.3 667,177 + Sama_0541 0.50 -0.7 667,177 + Sama_0541 0.50 +0.5 667,177 + Sama_0541 0.50 +1.3 667,177 + Sama_0541 0.50 +0.5 667,178 - Sama_0541 0.50 -0.1 667,191 + Sama_0541 0.51 +0.8 667,192 - Sama_0541 0.51 +0.2 667,192 - Sama_0541 0.51 -0.9 667,192 - Sama_0541 0.51 -0.1 667,192 - Sama_0541 0.51 -0.6 667,192 - Sama_0541 0.51 +0.5
Or see this region's nucleotide sequence