Experiment: Chloride 700 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0041 and Sama_0042 overlap by 1 nucleotides Sama_0042 and def are separated by 15 nucleotides def and Sama_0044 are separated by 187 nucleotides
Sama_0041: Sama_0041 - sun protein (RefSeq), at 44,805 to 46,088
_0041
Sama_0042: Sama_0042 - methionyl-tRNA formyltransferase (RefSeq), at 46,088 to 47,050
_0042
Sama_0043: def - peptide deformylase (RefSeq), at 47,066 to 47,569
def
Sama_0044: Sama_0044 - LysM domain-containing protein (RefSeq), at 47,757 to 48,797
_0044
Position (kb) 46
47
48 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 45.357 kb on + strand, within Sama_0041 at 45.358 kb on - strand, within Sama_0041 at 45.358 kb on - strand, within Sama_0041 at 45.358 kb on - strand, within Sama_0041 at 45.513 kb on + strand, within Sama_0041 at 45.514 kb on - strand, within Sama_0041 at 45.542 kb on - strand, within Sama_0041 at 45.542 kb on - strand, within Sama_0041 at 45.542 kb on - strand, within Sama_0041 at 45.542 kb on - strand, within Sama_0041 at 45.575 kb on + strand, within Sama_0041 at 45.576 kb on - strand, within Sama_0041 at 45.610 kb on - strand, within Sama_0041 at 45.610 kb on - strand, within Sama_0041 at 45.610 kb on - strand, within Sama_0041 at 45.610 kb on - strand, within Sama_0041 at 45.610 kb on - strand, within Sama_0041 at 45.610 kb on - strand, within Sama_0041 at 45.610 kb on - strand, within Sama_0041 at 45.675 kb on - strand, within Sama_0041 at 45.675 kb on - strand, within Sama_0041 at 45.676 kb on + strand, within Sama_0041 at 45.677 kb on - strand, within Sama_0041 at 45.677 kb on - strand, within Sama_0041 at 45.677 kb on - strand, within Sama_0041 at 45.725 kb on + strand, within Sama_0041 at 45.726 kb on - strand, within Sama_0041 at 45.726 kb on - strand, within Sama_0041 at 45.726 kb on - strand, within Sama_0041 at 45.726 kb on - strand, within Sama_0041 at 45.753 kb on + strand, within Sama_0041 at 45.753 kb on + strand, within Sama_0041 at 45.753 kb on + strand, within Sama_0041 at 45.753 kb on + strand, within Sama_0041 at 45.832 kb on + strand, within Sama_0041 at 45.832 kb on + strand, within Sama_0041 at 45.832 kb on + strand, within Sama_0041 at 45.832 kb on + strand, within Sama_0041 at 45.832 kb on + strand, within Sama_0041 at 45.833 kb on - strand, within Sama_0041 at 45.833 kb on - strand, within Sama_0041 at 45.833 kb on - strand, within Sama_0041 at 45.841 kb on + strand, within Sama_0041 at 45.841 kb on + strand, within Sama_0041 at 45.841 kb on + strand, within Sama_0041 at 45.855 kb on + strand, within Sama_0041 at 45.856 kb on - strand, within Sama_0041 at 45.856 kb on - strand, within Sama_0041 at 45.856 kb on - strand, within Sama_0041 at 45.856 kb on - strand, within Sama_0041 at 45.902 kb on + strand, within Sama_0041 at 45.902 kb on + strand, within Sama_0041 at 45.902 kb on + strand, within Sama_0041 at 45.902 kb on + strand, within Sama_0041 at 45.902 kb on + strand, within Sama_0041 at 45.902 kb on + strand, within Sama_0041 at 45.902 kb on + strand, within Sama_0041 at 45.903 kb on - strand, within Sama_0041 at 45.903 kb on - strand, within Sama_0041 at 45.903 kb on - strand, within Sama_0041 at 45.903 kb on - strand, within Sama_0041 at 45.903 kb on - strand, within Sama_0041 at 45.903 kb on - strand, within Sama_0041 at 45.903 kb on - strand, within Sama_0041 at 45.903 kb on - strand, within Sama_0041 at 45.904 kb on + strand, within Sama_0041 at 45.904 kb on + strand, within Sama_0041 at 45.904 kb on + strand, within Sama_0041 at 45.904 kb on + strand, within Sama_0041 at 45.904 kb on + strand, within Sama_0041 at 45.904 kb on + strand, within Sama_0041 at 45.904 kb on + strand, within Sama_0041 at 45.904 kb on + strand, within Sama_0041 at 45.905 kb on - strand, within Sama_0041 at 45.905 kb on - strand, within Sama_0041 at 45.905 kb on - strand, within Sama_0041 at 45.905 kb on - strand, within Sama_0041 at 45.905 kb on - strand, within Sama_0041 at 45.905 kb on - strand, within Sama_0041 at 45.905 kb on - strand, within Sama_0041 at 45.952 kb on + strand, within Sama_0041 at 45.953 kb on - strand, within Sama_0041 at 45.953 kb on - strand, within Sama_0041 at 46.082 kb on + strand at 46.083 kb on - strand at 46.089 kb on + strand at 46.089 kb on + strand at 46.089 kb on + strand at 46.090 kb on - strand at 46.090 kb on - strand at 47.068 kb on - strand at 47.068 kb on - strand at 47.068 kb on - strand at 47.068 kb on - strand at 47.068 kb on - strand at 47.068 kb on - strand at 47.068 kb on - strand at 47.134 kb on - strand, within def at 47.134 kb on - strand, within def at 47.134 kb on - strand, within def at 47.570 kb on - strand at 47.570 kb on - strand at 47.574 kb on - strand at 47.574 kb on - strand at 47.612 kb on + strand at 47.613 kb on - strand at 47.615 kb on - strand at 47.627 kb on - strand at 47.627 kb on - strand at 47.640 kb on + strand at 47.648 kb on - strand at 47.657 kb on - strand at 47.660 kb on + strand at 47.660 kb on + strand at 47.661 kb on - strand at 47.661 kb on - strand at 47.661 kb on - strand at 47.666 kb on + strand at 47.666 kb on + strand at 47.666 kb on + strand at 47.666 kb on + strand at 47.666 kb on + strand at 47.667 kb on - strand at 47.667 kb on - strand at 47.667 kb on - strand at 47.667 kb on - strand at 47.667 kb on - strand at 47.667 kb on - strand at 47.667 kb on - strand at 47.667 kb on - strand at 47.667 kb on - strand at 47.667 kb on - strand at 47.667 kb on - strand at 47.678 kb on + strand at 47.716 kb on + strand at 47.716 kb on + strand at 47.717 kb on - strand at 47.722 kb on + strand at 47.722 kb on + strand at 47.722 kb on + strand at 47.723 kb on - strand at 47.731 kb on + strand at 47.740 kb on + strand at 47.777 kb on + strand at 47.778 kb on - strand at 47.778 kb on - strand at 47.799 kb on + strand at 47.799 kb on + strand at 47.799 kb on + strand at 47.799 kb on + strand at 47.799 kb on + strand at 47.799 kb on + strand at 47.799 kb on + strand at 47.799 kb on + strand at 47.800 kb on - strand at 47.800 kb on - strand at 47.800 kb on - strand at 47.800 kb on - strand at 47.800 kb on - strand at 47.800 kb on - strand at 47.800 kb on - strand at 47.800 kb on - strand at 47.800 kb on - strand at 47.831 kb on + strand at 47.848 kb on + strand at 47.987 kb on + strand, within Sama_0044 at 47.988 kb on - strand, within Sama_0044 at 47.988 kb on - strand, within Sama_0044 at 47.988 kb on - strand, within Sama_0044 at 48.050 kb on + strand, within Sama_0044 at 48.050 kb on + strand, within Sama_0044 at 48.050 kb on + strand, within Sama_0044 at 48.050 kb on + strand, within Sama_0044
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 700 mM remove 45,357 + Sama_0041 0.43 +1.5 45,358 - Sama_0041 0.43 -2.5 45,358 - Sama_0041 0.43 -0.4 45,358 - Sama_0041 0.43 -2.3 45,513 + Sama_0041 0.55 +2.5 45,514 - Sama_0041 0.55 -1.1 45,542 - Sama_0041 0.57 -1.2 45,542 - Sama_0041 0.57 -0.6 45,542 - Sama_0041 0.57 -1.0 45,542 - Sama_0041 0.57 +0.3 45,575 + Sama_0041 0.60 +0.4 45,576 - Sama_0041 0.60 -0.3 45,610 - Sama_0041 0.63 -3.8 45,610 - Sama_0041 0.63 -0.3 45,610 - Sama_0041 0.63 -1.9 45,610 - Sama_0041 0.63 -1.9 45,610 - Sama_0041 0.63 -2.4 45,610 - Sama_0041 0.63 -1.3 45,610 - Sama_0041 0.63 -1.7 45,675 - Sama_0041 0.68 -2.4 45,675 - Sama_0041 0.68 -2.4 45,676 + Sama_0041 0.68 -0.4 45,677 - Sama_0041 0.68 -1.3 45,677 - Sama_0041 0.68 -0.7 45,677 - Sama_0041 0.68 -0.9 45,725 + Sama_0041 0.72 +0.1 45,726 - Sama_0041 0.72 -0.5 45,726 - Sama_0041 0.72 +0.1 45,726 - Sama_0041 0.72 -0.4 45,726 - Sama_0041 0.72 -1.4 45,753 + Sama_0041 0.74 -1.3 45,753 + Sama_0041 0.74 +1.3 45,753 + Sama_0041 0.74 +1.3 45,753 + Sama_0041 0.74 -0.4 45,832 + Sama_0041 0.80 -1.0 45,832 + Sama_0041 0.80 -0.1 45,832 + Sama_0041 0.80 -1.3 45,832 + Sama_0041 0.80 +0.4 45,832 + Sama_0041 0.80 -0.3 45,833 - Sama_0041 0.80 -1.1 45,833 - Sama_0041 0.80 -2.0 45,833 - Sama_0041 0.80 -0.6 45,841 + Sama_0041 0.81 -1.2 45,841 + Sama_0041 0.81 -1.3 45,841 + Sama_0041 0.81 -0.3 45,855 + Sama_0041 0.82 -1.0 45,856 - Sama_0041 0.82 -1.9 45,856 - Sama_0041 0.82 -0.3 45,856 - Sama_0041 0.82 -0.2 45,856 - Sama_0041 0.82 -1.4 45,902 + Sama_0041 0.85 +0.5 45,902 + Sama_0041 0.85 -1.1 45,902 + Sama_0041 0.85 +0.2 45,902 + Sama_0041 0.85 +0.9 45,902 + Sama_0041 0.85 +1.9 45,902 + Sama_0041 0.85 +0.0 45,902 + Sama_0041 0.85 -1.0 45,903 - Sama_0041 0.86 -0.1 45,903 - Sama_0041 0.86 -0.9 45,903 - Sama_0041 0.86 -1.7 45,903 - Sama_0041 0.86 +0.1 45,903 - Sama_0041 0.86 +0.5 45,903 - Sama_0041 0.86 -0.4 45,903 - Sama_0041 0.86 -0.5 45,903 - Sama_0041 0.86 +0.7 45,904 + Sama_0041 0.86 -1.1 45,904 + Sama_0041 0.86 -0.3 45,904 + Sama_0041 0.86 -0.2 45,904 + Sama_0041 0.86 +0.4 45,904 + Sama_0041 0.86 -0.1 45,904 + Sama_0041 0.86 +0.3 45,904 + Sama_0041 0.86 -1.6 45,904 + Sama_0041 0.86 -0.3 45,905 - Sama_0041 0.86 -0.9 45,905 - Sama_0041 0.86 -0.7 45,905 - Sama_0041 0.86 -0.2 45,905 - Sama_0041 0.86 +0.8 45,905 - Sama_0041 0.86 -0.8 45,905 - Sama_0041 0.86 -0.9 45,905 - Sama_0041 0.86 -3.1 45,952 + Sama_0041 0.89 -0.1 45,953 - Sama_0041 0.89 -0.4 45,953 - Sama_0041 0.89 -0.3 46,082 + -0.9 46,083 - -1.1 46,089 + +0.9 46,089 + -0.6 46,089 + -0.7 46,090 - -1.0 46,090 - +0.1 47,068 - -0.3 47,068 - +0.4 47,068 - +0.5 47,068 - -0.7 47,068 - -0.1 47,068 - -0.1 47,068 - -0.1 47,134 - def Sama_0043 0.13 -1.7 47,134 - def Sama_0043 0.13 -1.9 47,134 - def Sama_0043 0.13 -1.9 47,570 - +0.1 47,570 - +1.1 47,574 - +0.1 47,574 - -1.9 47,612 + +0.7 47,613 - +0.1 47,615 - -0.1 47,627 - +1.5 47,627 - -1.7 47,640 + +1.1 47,648 - +0.3 47,657 - +1.7 47,660 + +1.6 47,660 + +1.4 47,661 - -0.7 47,661 - +0.1 47,661 - +0.1 47,666 + -2.3 47,666 + +1.4 47,666 + +0.5 47,666 + -0.5 47,666 + +0.7 47,667 - +0.2 47,667 - +0.2 47,667 - +0.0 47,667 - +0.1 47,667 - +0.4 47,667 - -0.6 47,667 - +1.2 47,667 - +0.3 47,667 - +1.9 47,667 - -0.0 47,667 - -0.7 47,678 + -0.4 47,716 + +1.3 47,716 + -0.9 47,717 - -0.1 47,722 + +0.1 47,722 + +0.6 47,722 + +0.1 47,723 - +0.1 47,731 + -0.9 47,740 + +3.5 47,777 + +0.6 47,778 - -0.5 47,778 - -0.3 47,799 + -0.3 47,799 + +0.0 47,799 + +0.1 47,799 + -1.4 47,799 + +0.9 47,799 + +1.9 47,799 + -2.4 47,799 + -0.5 47,800 - -0.2 47,800 - +0.0 47,800 - -0.9 47,800 - -0.6 47,800 - +0.9 47,800 - -0.5 47,800 - +0.9 47,800 - -0.3 47,800 - +0.3 47,831 + +0.1 47,848 + -0.1 47,987 + Sama_0044 0.22 -0.0 47,988 - Sama_0044 0.22 +0.3 47,988 - Sama_0044 0.22 +0.3 47,988 - Sama_0044 0.22 +2.1 48,050 + Sama_0044 0.28 -0.3 48,050 + Sama_0044 0.28 -0.3 48,050 + Sama_0044 0.28 -0.4 48,050 + Sama_0044 0.28 +0.6
Or see this region's nucleotide sequence