Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO3933 and SO3934 are separated by 71 nucleotides SO3934 and vacB are separated by 0 nucleotides
SO3933: SO3933 - membrane protein, putative (NCBI ptt file), at 4,077,285 to 4,078,709
SO3933
SO3934: SO3934 - RNA methyltransferase, TrmH family, group 3 (NCBI ptt file), at 4,078,781 to 4,079,521
SO3934
SO3935: vacB - ribonuclease R (NCBI ptt file), at 4,079,522 to 4,081,948
vacB
Position (kb) 4078
4079
4080 Strain fitness (log2 ratio) -2
-1
0
1 at 4078.108 kb on - strand, within SO3933 at 4078.225 kb on + strand, within SO3933 at 4078.231 kb on - strand, within SO3933 at 4078.246 kb on + strand, within SO3933 at 4078.254 kb on - strand, within SO3933 at 4078.276 kb on + strand, within SO3933 at 4078.276 kb on + strand, within SO3933 at 4078.284 kb on - strand, within SO3933 at 4078.369 kb on + strand, within SO3933 at 4078.442 kb on - strand, within SO3933 at 4078.484 kb on - strand, within SO3933 at 4078.484 kb on - strand, within SO3933 at 4078.811 kb on - strand at 4078.870 kb on - strand, within SO3934 at 4078.907 kb on + strand, within SO3934 at 4078.907 kb on + strand, within SO3934 at 4078.915 kb on - strand, within SO3934 at 4078.915 kb on - strand, within SO3934 at 4078.915 kb on - strand, within SO3934 at 4078.915 kb on - strand, within SO3934 at 4078.921 kb on - strand, within SO3934 at 4079.124 kb on + strand, within SO3934 at 4079.150 kb on - strand, within SO3934 at 4079.150 kb on - strand, within SO3934 at 4079.193 kb on - strand, within SO3934 at 4079.200 kb on + strand, within SO3934 at 4079.318 kb on - strand, within SO3934 at 4079.325 kb on - strand, within SO3934 at 4079.468 kb on - strand at 4079.485 kb on - strand at 4079.485 kb on - strand at 4079.640 kb on + strand at 4079.648 kb on - strand at 4079.742 kb on + strand at 4079.750 kb on - strand at 4079.800 kb on + strand, within vacB at 4079.804 kb on - strand, within vacB at 4079.808 kb on - strand, within vacB at 4079.829 kb on - strand, within vacB at 4079.829 kb on - strand, within vacB at 4079.928 kb on - strand, within vacB at 4079.928 kb on - strand, within vacB at 4080.081 kb on + strand, within vacB at 4080.180 kb on + strand, within vacB at 4080.430 kb on + strand, within vacB at 4080.430 kb on + strand, within vacB at 4080.438 kb on - strand, within vacB at 4080.438 kb on - strand, within vacB at 4080.516 kb on + strand, within vacB
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 4,078,108 - SO3933 0.58 +0.4 4,078,225 + SO3933 0.66 -0.2 4,078,231 - SO3933 0.66 +0.5 4,078,246 + SO3933 0.67 -0.0 4,078,254 - SO3933 0.68 +0.2 4,078,276 + SO3933 0.70 +0.6 4,078,276 + SO3933 0.70 -0.3 4,078,284 - SO3933 0.70 -0.7 4,078,369 + SO3933 0.76 -0.3 4,078,442 - SO3933 0.81 +0.5 4,078,484 - SO3933 0.84 -0.2 4,078,484 - SO3933 0.84 +0.8 4,078,811 - +0.5 4,078,870 - SO3934 0.12 +0.4 4,078,907 + SO3934 0.17 +1.0 4,078,907 + SO3934 0.17 -0.2 4,078,915 - SO3934 0.18 +1.5 4,078,915 - SO3934 0.18 -0.2 4,078,915 - SO3934 0.18 +1.1 4,078,915 - SO3934 0.18 +0.6 4,078,921 - SO3934 0.19 +1.0 4,079,124 + SO3934 0.46 +0.3 4,079,150 - SO3934 0.50 +0.4 4,079,150 - SO3934 0.50 +0.6 4,079,193 - SO3934 0.56 +0.3 4,079,200 + SO3934 0.57 +1.5 4,079,318 - SO3934 0.72 +1.3 4,079,325 - SO3934 0.73 +0.3 4,079,468 - +0.4 4,079,485 - -0.1 4,079,485 - +1.1 4,079,640 + -0.1 4,079,648 - -1.5 4,079,742 + -0.9 4,079,750 - -2.7 4,079,800 + vacB SO3935 0.11 -0.4 4,079,804 - vacB SO3935 0.12 -0.6 4,079,808 - vacB SO3935 0.12 -1.2 4,079,829 - vacB SO3935 0.13 -2.4 4,079,829 - vacB SO3935 0.13 -0.6 4,079,928 - vacB SO3935 0.17 -1.4 4,079,928 - vacB SO3935 0.17 -1.1 4,080,081 + vacB SO3935 0.23 -0.7 4,080,180 + vacB SO3935 0.27 -1.8 4,080,430 + vacB SO3935 0.37 -1.4 4,080,430 + vacB SO3935 0.37 -0.4 4,080,438 - vacB SO3935 0.38 -1.2 4,080,438 - vacB SO3935 0.38 +0.3 4,080,516 + vacB SO3935 0.41 +0.5
Or see this region's nucleotide sequence