Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mutY and SO3369 are separated by 9 nucleotides SO3369 and SO3370 are separated by 80 nucleotides SO3370 and SO3371 are separated by 4 nucleotides
SO3368: mutY - A/G-specific adenine glycosylase (NCBI ptt file), at 3,510,656 to 3,511,753
mutY
SO3369: SO3369 - conserved hypothetical protein (NCBI ptt file), at 3,511,763 to 3,512,041
SO3369
SO3370: SO3370 - conserved hypothetical protein (NCBI ptt file), at 3,512,122 to 3,512,697
SO3370
SO3371: SO3371 - hypothetical Cytochrome B561 (NCBI ptt file), at 3,512,702 to 3,513,253
SO3371
Position (kb) 3511
3512
3513 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 3510.790 kb on + strand, within mutY at 3510.901 kb on - strand, within mutY at 3510.925 kb on + strand, within mutY at 3510.978 kb on + strand, within mutY at 3511.004 kb on + strand, within mutY at 3511.004 kb on + strand, within mutY at 3511.004 kb on + strand, within mutY at 3511.004 kb on + strand, within mutY at 3511.012 kb on - strand, within mutY at 3511.012 kb on - strand, within mutY at 3511.012 kb on - strand, within mutY at 3511.012 kb on - strand, within mutY at 3511.031 kb on + strand, within mutY at 3511.109 kb on + strand, within mutY at 3511.122 kb on - strand, within mutY at 3511.297 kb on - strand, within mutY at 3511.372 kb on + strand, within mutY at 3511.470 kb on + strand, within mutY at 3511.596 kb on + strand, within mutY at 3511.882 kb on - strand, within SO3369 at 3511.904 kb on + strand, within SO3369 at 3511.992 kb on + strand, within SO3369 at 3512.048 kb on + strand at 3512.056 kb on - strand at 3512.056 kb on - strand at 3512.157 kb on - strand at 3512.163 kb on + strand at 3512.163 kb on + strand at 3512.170 kb on + strand at 3512.249 kb on + strand, within SO3370 at 3512.257 kb on - strand, within SO3370 at 3512.263 kb on + strand, within SO3370 at 3512.402 kb on + strand, within SO3370 at 3512.428 kb on - strand, within SO3370 at 3512.495 kb on + strand, within SO3370 at 3512.495 kb on + strand, within SO3370 at 3512.509 kb on - strand, within SO3370 at 3512.509 kb on - strand, within SO3370 at 3512.560 kb on + strand, within SO3370 at 3512.568 kb on - strand, within SO3370 at 3512.568 kb on - strand, within SO3370 at 3512.568 kb on - strand, within SO3370 at 3512.568 kb on - strand, within SO3370 at 3512.568 kb on - strand, within SO3370 at 3512.587 kb on + strand, within SO3370 at 3512.671 kb on - strand at 3512.732 kb on - strand at 3512.734 kb on + strand at 3512.734 kb on + strand at 3512.742 kb on - strand at 3512.786 kb on - strand, within SO3371 at 3512.804 kb on + strand, within SO3371 at 3512.804 kb on + strand, within SO3371 at 3512.825 kb on + strand, within SO3371 at 3512.871 kb on - strand, within SO3371 at 3512.904 kb on - strand, within SO3371 at 3512.986 kb on - strand, within SO3371 at 3513.038 kb on - strand, within SO3371
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 3,510,790 + mutY SO3368 0.12 -0.9 3,510,901 - mutY SO3368 0.22 +0.6 3,510,925 + mutY SO3368 0.24 +0.4 3,510,978 + mutY SO3368 0.29 -0.4 3,511,004 + mutY SO3368 0.32 -0.2 3,511,004 + mutY SO3368 0.32 +0.5 3,511,004 + mutY SO3368 0.32 +0.1 3,511,004 + mutY SO3368 0.32 -0.5 3,511,012 - mutY SO3368 0.32 +0.3 3,511,012 - mutY SO3368 0.32 -0.8 3,511,012 - mutY SO3368 0.32 +0.4 3,511,012 - mutY SO3368 0.32 -0.1 3,511,031 + mutY SO3368 0.34 -1.8 3,511,109 + mutY SO3368 0.41 +0.0 3,511,122 - mutY SO3368 0.42 +0.3 3,511,297 - mutY SO3368 0.58 -0.1 3,511,372 + mutY SO3368 0.65 +1.6 3,511,470 + mutY SO3368 0.74 -0.8 3,511,596 + mutY SO3368 0.86 +0.4 3,511,882 - SO3369 0.43 -2.4 3,511,904 + SO3369 0.51 -1.4 3,511,992 + SO3369 0.82 -1.3 3,512,048 + +0.4 3,512,056 - +0.6 3,512,056 - +1.2 3,512,157 - -0.2 3,512,163 + +0.9 3,512,163 + -0.2 3,512,170 + +0.6 3,512,249 + SO3370 0.22 +0.3 3,512,257 - SO3370 0.23 +0.1 3,512,263 + SO3370 0.24 -0.5 3,512,402 + SO3370 0.49 +0.2 3,512,428 - SO3370 0.53 -0.9 3,512,495 + SO3370 0.65 -0.1 3,512,495 + SO3370 0.65 -0.2 3,512,509 - SO3370 0.67 +0.2 3,512,509 - SO3370 0.67 -0.4 3,512,560 + SO3370 0.76 +0.3 3,512,568 - SO3370 0.77 -0.6 3,512,568 - SO3370 0.77 -0.9 3,512,568 - SO3370 0.77 -1.4 3,512,568 - SO3370 0.77 -0.4 3,512,568 - SO3370 0.77 -0.8 3,512,587 + SO3370 0.81 +0.5 3,512,671 - -1.0 3,512,732 - +0.2 3,512,734 + +0.4 3,512,734 + -0.0 3,512,742 - -0.7 3,512,786 - SO3371 0.15 +0.6 3,512,804 + SO3371 0.18 +2.1 3,512,804 + SO3371 0.18 +3.2 3,512,825 + SO3371 0.22 +0.6 3,512,871 - SO3371 0.31 +1.0 3,512,904 - SO3371 0.37 +1.5 3,512,986 - SO3371 0.51 -0.4 3,513,038 - SO3371 0.61 +0.6
Or see this region's nucleotide sequence