Strain Fitness in Shewanella oneidensis MR-1 around SO1926

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO1925 and gltA are separated by 284 nucleotidesgltA and sdhC are separated by 416 nucleotidessdhC and SO1927.1 overlap by 13 nucleotides SO1925: SO1925 - HlyD family secretion protein (NCBI ptt file), at 2,027,826 to 2,028,890 SO1925 SO1926: gltA - citrate synthase (NCBI ptt file), at 2,029,175 to 2,030,461 gltA SO1927: sdhC - succinate dehydrogenase, cytochrome b556 subunit (NCBI ptt file), at 2,030,878 to 2,031,273 sdhC SO1927.1: SO1927.1 - hypothetical succinate dehydrogenase, hydrophobic subunit (NCBI ptt file), at 2,031,261 to 2,031,614 SO1927.1 Position (kb) 2029 2030 2031Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2028.296 kb on + strand, within SO1925at 2028.309 kb on - strand, within SO1925at 2028.382 kb on - strand, within SO1925at 2028.451 kb on - strand, within SO1925at 2028.535 kb on - strand, within SO1925at 2028.545 kb on - strand, within SO1925at 2028.545 kb on - strand, within SO1925at 2028.695 kb on + strand, within SO1925at 2029.003 kb on + strandat 2029.226 kb on - strandat 2029.414 kb on - strand, within gltAat 2029.664 kb on + strand, within gltAat 2029.664 kb on + strand, within gltAat 2029.672 kb on - strand, within gltAat 2029.684 kb on - strand, within gltAat 2029.827 kb on + strand, within gltAat 2029.835 kb on - strand, within gltAat 2029.884 kb on - strand, within gltAat 2029.915 kb on + strand, within gltAat 2029.923 kb on - strand, within gltAat 2030.184 kb on + strand, within gltAat 2030.199 kb on - strand, within gltAat 2030.206 kb on + strand, within gltAat 2030.255 kb on + strand, within gltAat 2030.281 kb on + strand, within gltAat 2030.457 kb on + strandat 2030.457 kb on + strandat 2030.457 kb on + strandat 2030.457 kb on + strandat 2030.457 kb on + strandat 2030.465 kb on - strandat 2030.489 kb on - strandat 2030.609 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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2,028,296 + SO1925 0.44 +0.4
2,028,309 - SO1925 0.45 +0.3
2,028,382 - SO1925 0.52 -0.3
2,028,451 - SO1925 0.59 +0.5
2,028,535 - SO1925 0.67 -0.4
2,028,545 - SO1925 0.68 +1.0
2,028,545 - SO1925 0.68 +0.6
2,028,695 + SO1925 0.82 +0.2
2,029,003 + -0.4
2,029,226 - -2.1
2,029,414 - gltA SO1926 0.19 +0.4
2,029,664 + gltA SO1926 0.38 -0.8
2,029,664 + gltA SO1926 0.38 +0.8
2,029,672 - gltA SO1926 0.39 -2.0
2,029,684 - gltA SO1926 0.40 -0.3
2,029,827 + gltA SO1926 0.51 -1.0
2,029,835 - gltA SO1926 0.51 +0.4
2,029,884 - gltA SO1926 0.55 -2.4
2,029,915 + gltA SO1926 0.57 -2.3
2,029,923 - gltA SO1926 0.58 -0.2
2,030,184 + gltA SO1926 0.78 -0.8
2,030,199 - gltA SO1926 0.80 -1.6
2,030,206 + gltA SO1926 0.80 -0.9
2,030,255 + gltA SO1926 0.84 +0.4
2,030,281 + gltA SO1926 0.86 -0.7
2,030,457 + -1.2
2,030,457 + -0.7
2,030,457 + -2.3
2,030,457 + -1.4
2,030,457 + -1.2
2,030,465 - +0.0
2,030,489 - +3.4
2,030,609 + +2.2

Or see this region's nucleotide sequence