Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0746 and fpr are separated by 65 nucleotides fpr and SO0748 are separated by 122 nucleotides SO0748 and SO0749 are separated by 107 nucleotides SO0749 and SO0750 are separated by 11 nucleotides
SO0746: SO0746 - glutathione S-transferase family protein (NCBI ptt file), at 763,935 to 764,531
SO0746
SO0747: fpr - ferredoxin--NADP reductase (NCBI ptt file), at 764,597 to 765,346
fpr
SO0748: SO0748 - hypothetical protein (NCBI ptt file), at 765,469 to 766,146
SO0748
SO0749: SO0749 - conserved hypothetical protein (NCBI ptt file), at 766,254 to 766,847
SO0749
SO0750: SO0750 - glutamate synthase, putative (NCBI ptt file), at 766,859 to 768,349
SO0750
Position (kb) 765
766
767 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 764.496 kb on + strand at 764.497 kb on + strand at 764.497 kb on + strand at 764.505 kb on - strand at 764.510 kb on - strand at 764.682 kb on + strand, within fpr at 764.716 kb on + strand, within fpr at 764.778 kb on - strand, within fpr at 764.829 kb on + strand, within fpr at 764.829 kb on + strand, within fpr at 764.837 kb on - strand, within fpr at 764.897 kb on + strand, within fpr at 764.897 kb on + strand, within fpr at 764.899 kb on - strand, within fpr at 764.905 kb on - strand, within fpr at 764.916 kb on + strand, within fpr at 764.916 kb on + strand, within fpr at 764.916 kb on + strand, within fpr at 764.916 kb on + strand, within fpr at 764.916 kb on + strand, within fpr at 764.924 kb on - strand, within fpr at 764.924 kb on - strand, within fpr at 764.953 kb on + strand, within fpr at 764.953 kb on + strand, within fpr at 764.999 kb on - strand, within fpr at 765.036 kb on + strand, within fpr at 765.044 kb on - strand, within fpr at 765.044 kb on - strand, within fpr at 765.044 kb on - strand, within fpr at 765.044 kb on - strand, within fpr at 765.065 kb on - strand, within fpr at 765.065 kb on - strand, within fpr at 765.065 kb on - strand, within fpr at 765.065 kb on - strand, within fpr at 765.173 kb on - strand, within fpr at 765.202 kb on - strand, within fpr at 765.238 kb on + strand, within fpr at 765.383 kb on + strand at 765.426 kb on + strand at 765.453 kb on + strand at 765.475 kb on - strand at 765.475 kb on - strand at 765.584 kb on - strand, within SO0748 at 765.584 kb on - strand, within SO0748 at 765.584 kb on - strand, within SO0748 at 765.584 kb on - strand, within SO0748 at 765.599 kb on - strand, within SO0748 at 765.614 kb on - strand, within SO0748 at 765.614 kb on - strand, within SO0748 at 765.743 kb on + strand, within SO0748 at 765.745 kb on - strand, within SO0748 at 765.754 kb on + strand, within SO0748 at 766.025 kb on + strand, within SO0748 at 766.025 kb on + strand, within SO0748 at 766.025 kb on + strand, within SO0748 at 766.030 kb on + strand, within SO0748 at 766.035 kb on + strand, within SO0748 at 766.038 kb on - strand, within SO0748 at 766.152 kb on - strand at 766.216 kb on - strand at 766.363 kb on + strand, within SO0749 at 766.363 kb on + strand, within SO0749 at 766.363 kb on + strand, within SO0749 at 766.363 kb on + strand, within SO0749 at 766.363 kb on + strand, within SO0749 at 766.363 kb on + strand, within SO0749 at 766.371 kb on - strand, within SO0749 at 766.371 kb on - strand, within SO0749 at 766.371 kb on - strand, within SO0749 at 766.456 kb on + strand, within SO0749 at 766.496 kb on - strand, within SO0749 at 766.560 kb on + strand, within SO0749 at 766.700 kb on + strand, within SO0749 at 766.708 kb on - strand, within SO0749 at 766.708 kb on - strand, within SO0749 at 766.839 kb on + strand at 766.845 kb on - strand at 766.946 kb on + strand at 767.098 kb on - strand, within SO0750 at 767.120 kb on - strand, within SO0750 at 767.120 kb on - strand, within SO0750
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 764,496 + +0.2 764,497 + -0.3 764,497 + +1.3 764,505 - -1.3 764,510 - +0.1 764,682 + fpr SO0747 0.11 -1.2 764,716 + fpr SO0747 0.16 -2.9 764,778 - fpr SO0747 0.24 +0.8 764,829 + fpr SO0747 0.31 -2.1 764,829 + fpr SO0747 0.31 -1.3 764,837 - fpr SO0747 0.32 -2.4 764,897 + fpr SO0747 0.40 -1.2 764,897 + fpr SO0747 0.40 -1.6 764,899 - fpr SO0747 0.40 +0.8 764,905 - fpr SO0747 0.41 -0.5 764,916 + fpr SO0747 0.43 -0.7 764,916 + fpr SO0747 0.43 -1.4 764,916 + fpr SO0747 0.43 -1.5 764,916 + fpr SO0747 0.43 -2.0 764,916 + fpr SO0747 0.43 -0.5 764,924 - fpr SO0747 0.44 -0.8 764,924 - fpr SO0747 0.44 -1.9 764,953 + fpr SO0747 0.47 -1.9 764,953 + fpr SO0747 0.47 -0.5 764,999 - fpr SO0747 0.54 -0.6 765,036 + fpr SO0747 0.59 -0.4 765,044 - fpr SO0747 0.60 -1.6 765,044 - fpr SO0747 0.60 -1.4 765,044 - fpr SO0747 0.60 +1.3 765,044 - fpr SO0747 0.60 -1.3 765,065 - fpr SO0747 0.62 -0.7 765,065 - fpr SO0747 0.62 -1.6 765,065 - fpr SO0747 0.62 -1.0 765,065 - fpr SO0747 0.62 -1.0 765,173 - fpr SO0747 0.77 -1.0 765,202 - fpr SO0747 0.81 -1.6 765,238 + fpr SO0747 0.85 -0.1 765,383 + -0.9 765,426 + -1.2 765,453 + +0.3 765,475 - +0.8 765,475 - -0.4 765,584 - SO0748 0.17 -0.4 765,584 - SO0748 0.17 +1.1 765,584 - SO0748 0.17 -0.7 765,584 - SO0748 0.17 +1.6 765,599 - SO0748 0.19 +0.6 765,614 - SO0748 0.21 -0.4 765,614 - SO0748 0.21 -0.3 765,743 + SO0748 0.40 +0.1 765,745 - SO0748 0.41 -0.6 765,754 + SO0748 0.42 +0.1 766,025 + SO0748 0.82 +0.2 766,025 + SO0748 0.82 +1.2 766,025 + SO0748 0.82 +0.1 766,030 + SO0748 0.83 -0.7 766,035 + SO0748 0.83 +1.1 766,038 - SO0748 0.84 +0.6 766,152 - +0.9 766,216 - -0.3 766,363 + SO0749 0.18 +0.0 766,363 + SO0749 0.18 -0.7 766,363 + SO0749 0.18 -0.7 766,363 + SO0749 0.18 -0.7 766,363 + SO0749 0.18 -0.4 766,363 + SO0749 0.18 +0.9 766,371 - SO0749 0.20 -0.6 766,371 - SO0749 0.20 -0.3 766,371 - SO0749 0.20 +1.6 766,456 + SO0749 0.34 +0.5 766,496 - SO0749 0.41 -0.3 766,560 + SO0749 0.52 -1.4 766,700 + SO0749 0.75 -0.6 766,708 - SO0749 0.76 -0.5 766,708 - SO0749 0.76 -0.3 766,839 + +0.0 766,845 - +0.9 766,946 + -0.1 767,098 - SO0750 0.16 -0.5 767,120 - SO0750 0.18 +0.3 767,120 - SO0750 0.18 +0.2
Or see this region's nucleotide sequence