Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0639 and SO0640 are separated by 448 nucleotides SO0640 and SO0641 are separated by 196 nucleotides
SO0639: SO0639 - Collagenase family (NCBI ptt file), at 664,604 to 667,717
SO0639
SO0640: SO0640 - alcohol dehydrogenase, zinc-containing (NCBI ptt file), at 668,166 to 669,164
SO0640
SO0641: SO0641 - prophage MuSo1, transcriptional regulator, Cro/CI family (NCBI ptt file), at 669,361 to 670,083
SO0641
Position (kb) 668
669
670 Strain fitness (log2 ratio) -1
0
1
2
3 at 667.200 kb on - strand, within SO0639 at 667.369 kb on - strand, within SO0639 at 667.464 kb on - strand at 667.489 kb on + strand at 667.504 kb on - strand at 667.637 kb on + strand at 667.645 kb on - strand at 667.651 kb on + strand at 667.659 kb on - strand at 667.679 kb on + strand at 667.996 kb on + strand at 668.004 kb on - strand at 668.063 kb on - strand at 668.063 kb on - strand at 668.076 kb on + strand at 668.099 kb on + strand at 668.107 kb on - strand at 668.193 kb on + strand at 668.200 kb on + strand at 668.274 kb on + strand, within SO0640 at 668.274 kb on + strand, within SO0640 at 668.282 kb on - strand, within SO0640 at 668.282 kb on - strand, within SO0640 at 668.326 kb on + strand, within SO0640 at 668.418 kb on - strand, within SO0640 at 668.470 kb on - strand, within SO0640 at 668.478 kb on + strand, within SO0640 at 668.486 kb on - strand, within SO0640 at 668.493 kb on + strand, within SO0640 at 668.573 kb on - strand, within SO0640 at 668.677 kb on + strand, within SO0640 at 668.677 kb on + strand, within SO0640 at 668.685 kb on - strand, within SO0640 at 668.685 kb on - strand, within SO0640 at 668.706 kb on + strand at 668.784 kb on + strand, within SO0640 at 668.801 kb on + strand, within SO0640 at 668.809 kb on - strand, within SO0640 at 668.881 kb on + strand, within SO0640 at 668.881 kb on + strand, within SO0640 at 668.889 kb on - strand, within SO0640 at 668.889 kb on - strand, within SO0640 at 668.901 kb on + strand, within SO0640 at 668.911 kb on + strand, within SO0640 at 668.968 kb on + strand, within SO0640 at 668.975 kb on + strand, within SO0640 at 669.102 kb on + strand at 669.107 kb on + strand at 669.268 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 667,200 - SO0639 0.83 +0.8 667,369 - SO0639 0.89 +0.2 667,464 - -0.7 667,489 + +0.5 667,504 - -0.7 667,637 + -0.6 667,645 - +0.9 667,651 + +0.3 667,659 - +0.1 667,679 + -0.1 667,996 + -1.2 668,004 - +0.3 668,063 - +0.0 668,063 - +0.2 668,076 + -0.4 668,099 + +1.0 668,107 - -0.6 668,193 + +2.0 668,200 + +1.2 668,274 + SO0640 0.11 +1.6 668,274 + SO0640 0.11 +1.1 668,282 - SO0640 0.12 +1.4 668,282 - SO0640 0.12 +1.9 668,326 + SO0640 0.16 +1.3 668,418 - SO0640 0.25 +1.8 668,470 - SO0640 0.30 +1.7 668,478 + SO0640 0.31 +1.6 668,486 - SO0640 0.32 +2.0 668,493 + SO0640 0.33 +1.6 668,573 - SO0640 0.41 +1.4 668,677 + SO0640 0.51 -1.4 668,677 + SO0640 0.51 +1.8 668,685 - SO0640 0.52 +1.6 668,685 - SO0640 0.52 +1.7 668,706 + +3.2 668,784 + SO0640 0.62 +0.0 668,801 + SO0640 0.64 +1.2 668,809 - SO0640 0.64 +1.0 668,881 + SO0640 0.72 +1.1 668,881 + SO0640 0.72 +1.1 668,889 - SO0640 0.72 +1.2 668,889 - SO0640 0.72 +1.6 668,901 + SO0640 0.74 +2.2 668,911 + SO0640 0.75 +1.1 668,968 + SO0640 0.80 +2.2 668,975 + SO0640 0.81 +1.1 669,102 + +1.1 669,107 + +1.6 669,268 - +0.9
Or see this region's nucleotide sequence