Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rimK-1 and SO0547 are separated by 46 nucleotides SO0547 and SO0548 are separated by 293 nucleotides SO0548 and SO0549 are separated by 146 nucleotides
SO0546: rimK-1 - ribosomal protein S6 modification protein (NCBI ptt file), at 568,931 to 569,836
rimK-1
SO0547: SO0547 - conserved hypothetical protein (NCBI ptt file), at 569,883 to 570,575
SO0547
SO0548: SO0548 - DNA-binding protein, HU family (NCBI ptt file), at 570,869 to 571,141
SO0548
SO0549: SO0549 - chemotaxis protein CheY/response regulator receiver domain protein (NCBI ptt file), at 571,288 to 572,091
SO0549
Position (kb) 569
570
571 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 568.916 kb on - strand at 568.916 kb on - strand at 568.916 kb on - strand at 568.966 kb on + strand at 568.974 kb on - strand at 568.986 kb on - strand at 569.229 kb on + strand, within rimK-1 at 569.261 kb on + strand, within rimK-1 at 569.267 kb on + strand, within rimK-1 at 569.361 kb on + strand, within rimK-1 at 569.364 kb on - strand, within rimK-1 at 569.373 kb on + strand, within rimK-1 at 569.507 kb on - strand, within rimK-1 at 569.572 kb on + strand, within rimK-1 at 569.607 kb on + strand, within rimK-1 at 569.615 kb on - strand, within rimK-1 at 569.686 kb on + strand, within rimK-1 at 569.703 kb on + strand, within rimK-1 at 569.947 kb on - strand at 569.962 kb on - strand, within SO0547 at 569.962 kb on - strand, within SO0547 at 569.962 kb on - strand, within SO0547 at 569.976 kb on - strand, within SO0547 at 569.986 kb on + strand, within SO0547 at 569.993 kb on + strand, within SO0547 at 570.054 kb on + strand, within SO0547 at 570.159 kb on + strand, within SO0547 at 570.246 kb on + strand, within SO0547 at 570.254 kb on - strand, within SO0547 at 570.265 kb on + strand, within SO0547 at 570.325 kb on + strand, within SO0547 at 570.447 kb on + strand, within SO0547 at 570.513 kb on + strand at 570.808 kb on - strand at 570.809 kb on - strand at 570.839 kb on - strand at 570.870 kb on - strand at 570.900 kb on + strand, within SO0548 at 571.080 kb on + strand, within SO0548 at 571.086 kb on + strand, within SO0548 at 571.126 kb on + strand at 571.134 kb on - strand at 571.134 kb on - strand at 571.198 kb on + strand at 571.198 kb on + strand at 571.199 kb on + strand at 571.211 kb on + strand at 571.216 kb on + strand at 571.381 kb on + strand, within SO0549 at 571.389 kb on - strand, within SO0549 at 571.409 kb on - strand, within SO0549 at 571.484 kb on - strand, within SO0549 at 571.539 kb on - strand, within SO0549 at 571.563 kb on - strand, within SO0549
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 568,916 - +0.6 568,916 - -0.1 568,916 - -0.9 568,966 + -1.9 568,974 - -0.3 568,986 - -0.4 569,229 + rimK-1 SO0546 0.33 -0.4 569,261 + rimK-1 SO0546 0.36 -2.8 569,267 + rimK-1 SO0546 0.37 +0.0 569,361 + rimK-1 SO0546 0.47 -0.5 569,364 - rimK-1 SO0546 0.48 -1.5 569,373 + rimK-1 SO0546 0.49 -1.1 569,507 - rimK-1 SO0546 0.64 -1.4 569,572 + rimK-1 SO0546 0.71 -0.2 569,607 + rimK-1 SO0546 0.75 +0.8 569,615 - rimK-1 SO0546 0.75 -0.2 569,686 + rimK-1 SO0546 0.83 -1.9 569,703 + rimK-1 SO0546 0.85 -0.7 569,947 - -0.7 569,962 - SO0547 0.11 -2.4 569,962 - SO0547 0.11 -2.0 569,962 - SO0547 0.11 -1.9 569,976 - SO0547 0.13 -1.3 569,986 + SO0547 0.15 -2.1 569,993 + SO0547 0.16 -2.2 570,054 + SO0547 0.25 -2.0 570,159 + SO0547 0.40 -1.7 570,246 + SO0547 0.52 -1.9 570,254 - SO0547 0.54 -0.4 570,265 + SO0547 0.55 -1.3 570,325 + SO0547 0.64 -2.0 570,447 + SO0547 0.81 -2.7 570,513 + -3.5 570,808 - +1.2 570,809 - -1.5 570,839 - +0.3 570,870 - -0.4 570,900 + SO0548 0.11 +0.7 571,080 + SO0548 0.77 +0.6 571,086 + SO0548 0.79 -0.2 571,126 + -0.1 571,134 - -0.4 571,134 - -0.5 571,198 + +0.3 571,198 + +0.6 571,199 + -0.4 571,211 + +0.6 571,216 + +0.2 571,381 + SO0549 0.12 +0.4 571,389 - SO0549 0.13 -0.6 571,409 - SO0549 0.15 -0.6 571,484 - SO0549 0.24 -0.4 571,539 - SO0549 0.31 +0.2 571,563 - SO0549 0.34 -0.0
Or see this region's nucleotide sequence