Strain Fitness in Shewanella oneidensis MR-1 around SO0429

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0428 and SO0429 are separated by 221 nucleotidesSO0429 and SO0430 are separated by 317 nucleotidesSO0430 and SO0431 are separated by 52 nucleotides SO0428: SO0428 - conserved hypothetical protein (NCBI ptt file), at 449,534 to 451,744 SO0428 SO0429: SO0429 - peptidase, M13 family (NCBI ptt file), at 451,966 to 454,008 SO0429 SO0430: SO0430 - conserved hypothetical protein (NCBI ptt file), at 454,326 to 454,652 SO0430 SO0431: SO0431 - HAD-superfamily hydrolase, subfamily IA, variant 3 protein family (NCBI ptt file), at 454,705 to 455,358 SO0431 Position (kb) 451 452 453 454 455Strain fitness (log2 ratio) -3 -2 -1 0 1at 451.020 kb on - strand, within SO0428at 451.050 kb on + strand, within SO0428at 451.063 kb on - strand, within SO0428at 451.075 kb on - strand, within SO0428at 451.075 kb on - strand, within SO0428at 451.097 kb on - strand, within SO0428at 451.107 kb on - strand, within SO0428at 451.145 kb on - strand, within SO0428at 451.147 kb on - strand, within SO0428at 451.193 kb on + strand, within SO0428at 451.210 kb on - strand, within SO0428at 451.211 kb on - strand, within SO0428at 451.212 kb on + strand, within SO0428at 451.220 kb on - strand, within SO0428at 451.237 kb on + strand, within SO0428at 451.243 kb on - strand, within SO0428at 451.245 kb on + strand, within SO0428at 451.245 kb on - strand, within SO0428at 451.245 kb on - strand, within SO0428at 451.253 kb on - strand, within SO0428at 451.300 kb on + strand, within SO0428at 451.300 kb on + strand, within SO0428at 451.302 kb on + strand, within SO0428at 451.302 kb on + strand, within SO0428at 451.302 kb on + strand, within SO0428at 451.309 kb on - strand, within SO0428at 451.315 kb on + strand, within SO0428at 451.315 kb on + strand, within SO0428at 451.315 kb on + strand, within SO0428at 451.315 kb on + strand, within SO0428at 451.323 kb on - strand, within SO0428at 451.323 kb on - strand, within SO0428at 451.323 kb on - strand, within SO0428at 451.323 kb on - strand, within SO0428at 451.323 kb on - strand, within SO0428at 451.410 kb on + strand, within SO0428at 451.410 kb on + strand, within SO0428at 451.463 kb on - strand, within SO0428at 451.518 kb on - strand, within SO0428at 451.520 kb on + strand, within SO0428at 451.520 kb on + strand, within SO0428at 451.598 kb on - strandat 451.602 kb on + strandat 451.610 kb on - strandat 451.610 kb on - strandat 451.627 kb on - strandat 451.683 kb on + strandat 451.746 kb on + strandat 451.793 kb on - strandat 451.825 kb on - strandat 451.849 kb on - strandat 451.982 kb on - strandat 451.982 kb on - strandat 451.994 kb on + strandat 452.000 kb on - strandat 452.002 kb on - strandat 452.002 kb on - strandat 452.002 kb on - strandat 452.147 kb on + strandat 452.147 kb on + strandat 452.147 kb on + strandat 452.155 kb on - strandat 452.183 kb on + strand, within SO0429at 452.191 kb on - strand, within SO0429at 452.191 kb on - strand, within SO0429at 452.191 kb on - strand, within SO0429at 452.191 kb on - strand, within SO0429at 452.333 kb on + strand, within SO0429at 452.335 kb on - strand, within SO0429at 452.341 kb on - strand, within SO0429at 452.341 kb on - strand, within SO0429at 452.341 kb on - strand, within SO0429at 452.341 kb on - strand, within SO0429at 452.351 kb on - strand, within SO0429at 452.452 kb on - strand, within SO0429at 452.500 kb on - strand, within SO0429at 452.506 kb on + strand, within SO0429at 452.507 kb on + strand, within SO0429at 452.515 kb on - strand, within SO0429at 452.534 kb on + strand, within SO0429at 452.687 kb on + strand, within SO0429at 452.690 kb on - strand, within SO0429at 452.740 kb on - strand, within SO0429at 452.914 kb on - strand, within SO0429at 452.921 kb on + strand, within SO0429at 452.929 kb on - strand, within SO0429at 452.995 kb on - strand, within SO0429at 452.995 kb on - strand, within SO0429at 453.180 kb on + strand, within SO0429at 453.275 kb on - strand, within SO0429at 453.342 kb on + strand, within SO0429at 453.356 kb on + strand, within SO0429at 453.369 kb on + strand, within SO0429at 453.377 kb on - strand, within SO0429at 453.584 kb on + strand, within SO0429at 453.589 kb on + strand, within SO0429at 453.589 kb on + strand, within SO0429at 453.597 kb on + strand, within SO0429at 453.639 kb on + strand, within SO0429at 453.658 kb on - strand, within SO0429at 453.658 kb on - strand, within SO0429at 453.727 kb on - strand, within SO0429at 453.727 kb on - strand, within SO0429at 453.819 kb on + strandat 453.853 kb on + strandat 453.861 kb on - strandat 453.952 kb on - strandat 453.958 kb on - strandat 453.988 kb on - strandat 454.066 kb on - strandat 454.066 kb on - strandat 454.220 kb on - strandat 454.220 kb on - strandat 454.340 kb on - strandat 454.397 kb on - strand, within SO0430at 454.614 kb on + strand, within SO0430at 454.636 kb on - strandat 454.774 kb on + strand, within SO0431at 454.784 kb on + strand, within SO0431at 454.792 kb on - strand, within SO0431at 454.916 kb on - strand, within SO0431at 454.974 kb on + strand, within SO0431at 454.974 kb on + strand, within SO0431at 454.982 kb on - strand, within SO0431at 454.982 kb on - strand, within SO0431at 454.982 kb on - strand, within SO0431at 454.992 kb on - strand, within SO0431at 454.994 kb on + strand, within SO0431at 454.994 kb on + strand, within SO0431

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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451,020 - SO0428 0.67 -0.7
451,050 + SO0428 0.69 -1.8
451,063 - SO0428 0.69 -3.0
451,075 - SO0428 0.70 +0.0
451,075 - SO0428 0.70 -0.0
451,097 - SO0428 0.71 -0.9
451,107 - SO0428 0.71 -1.9
451,145 - SO0428 0.73 -0.9
451,147 - SO0428 0.73 -2.3
451,193 + SO0428 0.75 -1.4
451,210 - SO0428 0.76 -0.4
451,211 - SO0428 0.76 -0.2
451,212 + SO0428 0.76 -0.2
451,220 - SO0428 0.76 -1.3
451,237 + SO0428 0.77 +1.5
451,243 - SO0428 0.77 -0.8
451,245 + SO0428 0.77 +0.2
451,245 - SO0428 0.77 -0.7
451,245 - SO0428 0.77 +0.6
451,253 - SO0428 0.78 -2.2
451,300 + SO0428 0.80 -0.2
451,300 + SO0428 0.80 -0.7
451,302 + SO0428 0.80 -1.8
451,302 + SO0428 0.80 -0.3
451,302 + SO0428 0.80 +0.5
451,309 - SO0428 0.80 -0.9
451,315 + SO0428 0.81 -0.6
451,315 + SO0428 0.81 +1.1
451,315 + SO0428 0.81 -0.3
451,315 + SO0428 0.81 -1.1
451,323 - SO0428 0.81 -0.9
451,323 - SO0428 0.81 -0.2
451,323 - SO0428 0.81 -0.5
451,323 - SO0428 0.81 +0.5
451,323 - SO0428 0.81 -1.6
451,410 + SO0428 0.85 -0.1
451,410 + SO0428 0.85 -1.5
451,463 - SO0428 0.87 +0.1
451,518 - SO0428 0.90 -0.2
451,520 + SO0428 0.90 -0.4
451,520 + SO0428 0.90 -0.8
451,598 - -0.3
451,602 + -2.0
451,610 - -1.3
451,610 - +0.3
451,627 - -1.7
451,683 + -0.4
451,746 + -1.4
451,793 - +0.4
451,825 - -0.8
451,849 - +0.1
451,982 - +1.4
451,982 - +0.6
451,994 + +1.4
452,000 - +0.9
452,002 - +1.2
452,002 - +1.4
452,002 - -1.6
452,147 + +0.7
452,147 + +0.7
452,147 + -1.4
452,155 - +1.2
452,183 + SO0429 0.11 +0.9
452,191 - SO0429 0.11 -0.7
452,191 - SO0429 0.11 +1.5
452,191 - SO0429 0.11 +0.8
452,191 - SO0429 0.11 -0.1
452,333 + SO0429 0.18 +0.9
452,335 - SO0429 0.18 +0.4
452,341 - SO0429 0.18 +1.3
452,341 - SO0429 0.18 +1.7
452,341 - SO0429 0.18 -0.6
452,341 - SO0429 0.18 +1.0
452,351 - SO0429 0.19 +0.4
452,452 - SO0429 0.24 +1.0
452,500 - SO0429 0.26 -0.3
452,506 + SO0429 0.26 +0.7
452,507 + SO0429 0.26 +1.1
452,515 - SO0429 0.27 +0.8
452,534 + SO0429 0.28 +1.0
452,687 + SO0429 0.35 +1.1
452,690 - SO0429 0.35 -0.7
452,740 - SO0429 0.38 -0.4
452,914 - SO0429 0.46 +0.8
452,921 + SO0429 0.47 +0.8
452,929 - SO0429 0.47 -1.9
452,995 - SO0429 0.50 +0.6
452,995 - SO0429 0.50 +0.1
453,180 + SO0429 0.59 -0.6
453,275 - SO0429 0.64 +1.0
453,342 + SO0429 0.67 -1.0
453,356 + SO0429 0.68 +0.1
453,369 + SO0429 0.69 +0.3
453,377 - SO0429 0.69 +1.0
453,584 + SO0429 0.79 +0.3
453,589 + SO0429 0.79 +0.2
453,589 + SO0429 0.79 +0.0
453,597 + SO0429 0.80 -0.5
453,639 + SO0429 0.82 +0.7
453,658 - SO0429 0.83 +0.2
453,658 - SO0429 0.83 +0.5
453,727 - SO0429 0.86 +1.1
453,727 - SO0429 0.86 -1.0
453,819 + +0.5
453,853 + -0.9
453,861 - +0.5
453,952 - -0.2
453,958 - -0.9
453,988 - +0.9
454,066 - +0.4
454,066 - +0.4
454,220 - +0.0
454,220 - +0.1
454,340 - -0.5
454,397 - SO0430 0.22 -0.4
454,614 + SO0430 0.88 +0.4
454,636 - +0.7
454,774 + SO0431 0.11 +0.4
454,784 + SO0431 0.12 +0.8
454,792 - SO0431 0.13 -0.2
454,916 - SO0431 0.32 -0.3
454,974 + SO0431 0.41 -1.1
454,974 + SO0431 0.41 -0.6
454,982 - SO0431 0.42 +0.1
454,982 - SO0431 0.42 -0.1
454,982 - SO0431 0.42 -0.3
454,992 - SO0431 0.44 -0.0
454,994 + SO0431 0.44 +0.5
454,994 + SO0431 0.44 +0.0

Or see this region's nucleotide sequence