Strain Fitness in Marinobacter adhaerens HP15 around HP15_3830

Experiment: m.b. Cobalt chloride 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3829 and HP15_tRNA51 are separated by 69 nucleotidesHP15_tRNA51 and HP15_3830 are separated by 24 nucleotidesHP15_3830 and HP15_3831 are separated by 246 nucleotidesHP15_3831 and HP15_3832 are separated by 87 nucleotides HP15_3829: HP15_3829 - sodium/hydrogen exchanger, at 4,054,931 to 4,056,655 _3829 HP15_tRNA51: HP15_tRNA51 - tRNA-Gly, at 4,056,725 to 4,056,798 _tRNA51 HP15_3830: HP15_3830 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase, at 4,056,823 to 4,058,133 _3830 HP15_3831: HP15_3831 - transcriptional regulator, TetR family protein, at 4,058,380 to 4,058,985 _3831 HP15_3832: HP15_3832 - hypothetical protein, at 4,059,073 to 4,059,657 _3832 Position (kb) 4056 4057 4058 4059Strain fitness (log2 ratio) -1 0 1at 4055.830 kb on - strand, within HP15_3829at 4055.999 kb on - strand, within HP15_3829at 4056.103 kb on - strand, within HP15_3829at 4056.103 kb on - strand, within HP15_3829at 4056.207 kb on + strand, within HP15_3829at 4056.215 kb on - strand, within HP15_3829at 4056.247 kb on - strand, within HP15_3829at 4056.322 kb on - strand, within HP15_3829at 4056.343 kb on - strand, within HP15_3829at 4056.343 kb on - strand, within HP15_3829at 4056.343 kb on - strand, within HP15_3829at 4056.343 kb on - strand, within HP15_3829at 4056.369 kb on + strand, within HP15_3829at 4056.369 kb on + strand, within HP15_3829at 4056.383 kb on - strand, within HP15_3829at 4056.446 kb on - strand, within HP15_3829at 4056.599 kb on + strandat 4056.601 kb on + strandat 4056.609 kb on - strandat 4056.609 kb on - strandat 4056.614 kb on - strandat 4056.807 kb on - strandat 4056.909 kb on - strandat 4056.909 kb on - strandat 4056.936 kb on + strandat 4056.944 kb on - strandat 4057.073 kb on + strand, within HP15_3830at 4057.097 kb on + strand, within HP15_3830at 4057.105 kb on - strand, within HP15_3830at 4057.105 kb on - strand, within HP15_3830at 4057.130 kb on + strand, within HP15_3830at 4057.138 kb on - strand, within HP15_3830at 4057.138 kb on - strand, within HP15_3830at 4057.263 kb on + strand, within HP15_3830at 4057.263 kb on + strand, within HP15_3830at 4057.271 kb on - strand, within HP15_3830at 4057.271 kb on - strand, within HP15_3830at 4057.299 kb on - strand, within HP15_3830at 4057.321 kb on - strand, within HP15_3830at 4057.372 kb on - strand, within HP15_3830at 4057.516 kb on - strand, within HP15_3830at 4057.524 kb on + strand, within HP15_3830at 4057.578 kb on + strand, within HP15_3830at 4057.634 kb on - strand, within HP15_3830at 4057.701 kb on + strand, within HP15_3830at 4057.709 kb on - strand, within HP15_3830at 4057.709 kb on - strand, within HP15_3830at 4057.771 kb on - strand, within HP15_3830at 4057.811 kb on + strand, within HP15_3830at 4057.818 kb on + strand, within HP15_3830at 4057.831 kb on - strand, within HP15_3830at 4058.079 kb on - strandat 4058.123 kb on + strandat 4058.137 kb on + strandat 4058.145 kb on - strandat 4058.145 kb on - strandat 4058.245 kb on + strandat 4058.245 kb on + strandat 4058.335 kb on + strandat 4058.343 kb on - strandat 4058.480 kb on + strand, within HP15_3831at 4058.528 kb on + strand, within HP15_3831at 4058.569 kb on + strand, within HP15_3831at 4058.611 kb on - strand, within HP15_3831at 4058.736 kb on - strand, within HP15_3831at 4058.759 kb on + strand, within HP15_3831at 4058.788 kb on + strand, within HP15_3831at 4058.793 kb on + strand, within HP15_3831at 4058.892 kb on + strand, within HP15_3831

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.32 mM
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4,055,830 - HP15_3829 0.52 +0.4
4,055,999 - HP15_3829 0.62 -0.6
4,056,103 - HP15_3829 0.68 +0.2
4,056,103 - HP15_3829 0.68 +0.6
4,056,207 + HP15_3829 0.74 -0.2
4,056,215 - HP15_3829 0.74 +0.8
4,056,247 - HP15_3829 0.76 -0.2
4,056,322 - HP15_3829 0.81 -0.2
4,056,343 - HP15_3829 0.82 +0.4
4,056,343 - HP15_3829 0.82 +0.2
4,056,343 - HP15_3829 0.82 -0.2
4,056,343 - HP15_3829 0.82 -0.6
4,056,369 + HP15_3829 0.83 -0.7
4,056,369 + HP15_3829 0.83 -0.1
4,056,383 - HP15_3829 0.84 -0.2
4,056,446 - HP15_3829 0.88 -0.0
4,056,599 + +0.2
4,056,601 + +0.1
4,056,609 - +0.3
4,056,609 - -0.1
4,056,614 - +0.4
4,056,807 - -0.0
4,056,909 - +0.2
4,056,909 - +0.4
4,056,936 + +0.3
4,056,944 - +0.2
4,057,073 + HP15_3830 0.19 +1.3
4,057,097 + HP15_3830 0.21 +0.3
4,057,105 - HP15_3830 0.22 +0.2
4,057,105 - HP15_3830 0.22 -0.0
4,057,130 + HP15_3830 0.23 +0.5
4,057,138 - HP15_3830 0.24 +0.8
4,057,138 - HP15_3830 0.24 -1.0
4,057,263 + HP15_3830 0.34 -0.6
4,057,263 + HP15_3830 0.34 +0.8
4,057,271 - HP15_3830 0.34 -0.2
4,057,271 - HP15_3830 0.34 +0.5
4,057,299 - HP15_3830 0.36 +0.2
4,057,321 - HP15_3830 0.38 -0.2
4,057,372 - HP15_3830 0.42 +0.6
4,057,516 - HP15_3830 0.53 +1.0
4,057,524 + HP15_3830 0.53 +1.0
4,057,578 + HP15_3830 0.58 +0.5
4,057,634 - HP15_3830 0.62 +0.8
4,057,701 + HP15_3830 0.67 +0.4
4,057,709 - HP15_3830 0.68 +0.0
4,057,709 - HP15_3830 0.68 +0.5
4,057,771 - HP15_3830 0.72 -1.1
4,057,811 + HP15_3830 0.75 +0.3
4,057,818 + HP15_3830 0.76 +0.5
4,057,831 - HP15_3830 0.77 +0.5
4,058,079 - +1.3
4,058,123 + +0.2
4,058,137 + +0.3
4,058,145 - +0.2
4,058,145 - -0.2
4,058,245 + +0.7
4,058,245 + +0.1
4,058,335 + -0.9
4,058,343 - -0.9
4,058,480 + HP15_3831 0.17 -0.6
4,058,528 + HP15_3831 0.24 +0.2
4,058,569 + HP15_3831 0.31 -0.4
4,058,611 - HP15_3831 0.38 -0.4
4,058,736 - HP15_3831 0.59 +0.5
4,058,759 + HP15_3831 0.63 +0.4
4,058,788 + HP15_3831 0.67 +0.2
4,058,793 + HP15_3831 0.68 +0.2
4,058,892 + HP15_3831 0.84 -0.8

Or see this region's nucleotide sequence