Experiment: m.b. Cobalt chloride 0.32 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_286 and HP15_287 are separated by 22 nucleotides HP15_287 and HP15_288 are separated by 61 nucleotides HP15_288 and HP15_289 are separated by 224 nucleotides
HP15_286: HP15_286 - protein of unknown function YGGT, at 277,620 to 278,204
_286
HP15_287: HP15_287 - pyrroline-5-carboxylate reductase, at 278,227 to 279,060
_287
HP15_288: HP15_288 - alanine racemase domain protein, at 279,122 to 279,742
_288
HP15_289: HP15_289 - twitching motility protein PilT, at 279,967 to 281,001
_289
Position (kb) 279
280 Strain fitness (log2 ratio) -2
-1
0
1 at 278.153 kb on + strand at 278.576 kb on + strand, within HP15_287 at 278.874 kb on + strand, within HP15_287 at 279.061 kb on + strand at 279.067 kb on + strand at 279.094 kb on + strand at 279.097 kb on - strand at 279.102 kb on - strand at 279.151 kb on + strand at 279.151 kb on + strand at 279.159 kb on - strand at 279.159 kb on - strand at 279.164 kb on - strand at 279.228 kb on + strand, within HP15_288 at 279.231 kb on - strand, within HP15_288 at 279.261 kb on - strand, within HP15_288 at 279.312 kb on + strand, within HP15_288 at 279.411 kb on - strand, within HP15_288 at 279.510 kb on + strand, within HP15_288 at 279.510 kb on + strand, within HP15_288 at 279.623 kb on + strand, within HP15_288 at 279.654 kb on - strand, within HP15_288 at 279.739 kb on + strand at 279.739 kb on + strand at 279.811 kb on + strand at 279.824 kb on - strand at 280.133 kb on + strand, within HP15_289 at 280.251 kb on + strand, within HP15_289 at 280.273 kb on + strand, within HP15_289 at 280.330 kb on - strand, within HP15_289 at 280.337 kb on + strand, within HP15_289 at 280.345 kb on - strand, within HP15_289 at 280.364 kb on + strand, within HP15_289 at 280.536 kb on - strand, within HP15_289 at 280.576 kb on - strand, within HP15_289 at 280.578 kb on + strand, within HP15_289 at 280.640 kb on - strand, within HP15_289 at 280.694 kb on - strand, within HP15_289 at 280.732 kb on - strand, within HP15_289
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.32 mM remove 278,153 + -0.1 278,576 + HP15_287 0.42 -1.5 278,874 + HP15_287 0.78 +0.3 279,061 + -0.2 279,067 + +0.4 279,094 + -0.1 279,097 - -2.1 279,102 - -0.4 279,151 + -0.2 279,151 + -0.3 279,159 - -0.8 279,159 - +0.8 279,164 - -0.2 279,228 + HP15_288 0.17 -0.5 279,231 - HP15_288 0.18 -0.7 279,261 - HP15_288 0.22 +0.8 279,312 + HP15_288 0.31 -1.2 279,411 - HP15_288 0.47 -0.5 279,510 + HP15_288 0.62 -0.8 279,510 + HP15_288 0.62 -0.2 279,623 + HP15_288 0.81 -0.8 279,654 - HP15_288 0.86 +0.1 279,739 + -0.3 279,739 + -0.4 279,811 + -1.0 279,824 - -0.6 280,133 + HP15_289 0.16 -0.1 280,251 + HP15_289 0.27 +0.3 280,273 + HP15_289 0.30 -0.0 280,330 - HP15_289 0.35 +0.3 280,337 + HP15_289 0.36 +0.6 280,345 - HP15_289 0.37 +0.3 280,364 + HP15_289 0.38 +0.4 280,536 - HP15_289 0.55 +0.7 280,576 - HP15_289 0.59 -0.0 280,578 + HP15_289 0.59 -1.2 280,640 - HP15_289 0.65 +0.7 280,694 - HP15_289 0.70 +0.1 280,732 - HP15_289 0.74 -0.2
Or see this region's nucleotide sequence