Strain Fitness in Marinobacter adhaerens HP15 around HP15_2176

Experiment: m.b. Cobalt chloride 0.32 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2175 and HP15_2176 are separated by 68 nucleotidesHP15_2176 and HP15_2177 are separated by 282 nucleotidesHP15_2177 and HP15_2178 are separated by 17 nucleotides HP15_2175: HP15_2175 - glyceraldehyde-3-phosphate dehydrogenase, type I, at 2,286,037 to 2,287,041 _2175 HP15_2176: HP15_2176 - pyruvate kinase II, at 2,287,110 to 2,288,558 _2176 HP15_2177: HP15_2177 - 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase, at 2,288,841 to 2,289,506 _2177 HP15_2178: HP15_2178 - 6-phosphogluconolactonase, at 2,289,524 to 2,290,237 _2178 Position (kb) 2287 2288 2289Strain fitness (log2 ratio) -1 0 1at 2286.122 kb on + strandat 2286.147 kb on + strand, within HP15_2175at 2286.183 kb on + strand, within HP15_2175at 2286.330 kb on - strand, within HP15_2175at 2286.362 kb on - strand, within HP15_2175at 2286.372 kb on + strand, within HP15_2175at 2286.402 kb on - strand, within HP15_2175at 2286.402 kb on - strand, within HP15_2175at 2286.409 kb on - strand, within HP15_2175at 2286.421 kb on - strand, within HP15_2175at 2286.529 kb on + strand, within HP15_2175at 2286.529 kb on + strand, within HP15_2175at 2286.574 kb on + strand, within HP15_2175at 2286.610 kb on + strand, within HP15_2175at 2286.612 kb on + strand, within HP15_2175at 2286.625 kb on - strand, within HP15_2175at 2286.987 kb on - strandat 2287.023 kb on + strandat 2287.031 kb on - strandat 2287.031 kb on - strandat 2287.318 kb on + strand, within HP15_2176at 2287.371 kb on + strand, within HP15_2176at 2287.409 kb on + strand, within HP15_2176at 2287.451 kb on + strand, within HP15_2176at 2287.948 kb on - strand, within HP15_2176at 2287.968 kb on + strand, within HP15_2176at 2288.191 kb on + strand, within HP15_2176at 2288.232 kb on - strand, within HP15_2176at 2288.256 kb on + strand, within HP15_2176at 2288.295 kb on + strand, within HP15_2176at 2288.676 kb on + strandat 2288.725 kb on - strandat 2288.767 kb on - strandat 2288.860 kb on + strandat 2288.868 kb on - strandat 2288.952 kb on - strand, within HP15_2177at 2289.197 kb on + strand, within HP15_2177at 2289.229 kb on + strand, within HP15_2177at 2289.285 kb on - strand, within HP15_2177at 2289.444 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.32 mM
remove
2,286,122 + +0.2
2,286,147 + HP15_2175 0.11 -0.5
2,286,183 + HP15_2175 0.15 -0.7
2,286,330 - HP15_2175 0.29 +0.2
2,286,362 - HP15_2175 0.32 +0.2
2,286,372 + HP15_2175 0.33 +0.0
2,286,402 - HP15_2175 0.36 -0.2
2,286,402 - HP15_2175 0.36 +0.0
2,286,409 - HP15_2175 0.37 -0.6
2,286,421 - HP15_2175 0.38 +0.3
2,286,529 + HP15_2175 0.49 +0.1
2,286,529 + HP15_2175 0.49 +0.5
2,286,574 + HP15_2175 0.53 -0.5
2,286,610 + HP15_2175 0.57 +0.5
2,286,612 + HP15_2175 0.57 +0.5
2,286,625 - HP15_2175 0.59 -0.0
2,286,987 - +0.6
2,287,023 + +0.2
2,287,031 - -0.8
2,287,031 - +0.6
2,287,318 + HP15_2176 0.14 +0.7
2,287,371 + HP15_2176 0.18 +0.6
2,287,409 + HP15_2176 0.21 +1.5
2,287,451 + HP15_2176 0.24 +1.6
2,287,948 - HP15_2176 0.58 +1.0
2,287,968 + HP15_2176 0.59 +0.9
2,288,191 + HP15_2176 0.75 +0.8
2,288,232 - HP15_2176 0.77 +1.6
2,288,256 + HP15_2176 0.79 +0.7
2,288,295 + HP15_2176 0.82 +0.5
2,288,676 + -0.5
2,288,725 - -0.8
2,288,767 - -0.1
2,288,860 + -0.0
2,288,868 - -0.6
2,288,952 - HP15_2177 0.17 +0.2
2,289,197 + HP15_2177 0.53 +0.1
2,289,229 + HP15_2177 0.58 +0.4
2,289,285 - HP15_2177 0.67 +0.1
2,289,444 - -0.5

Or see this region's nucleotide sequence