Strain Fitness in Shewanella oneidensis MR-1 around SO2525.1

Experiment: L-Methionine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO2525 and SO2525.1 are separated by 928 nucleotidesSO2525.1 and SO2527 are separated by 429 nucleotides SO2525: SO2525 - ABC transporter, ATP-binding protein (NCBI ptt file), at 2,653,088 to 2,654,689 SO2525 SO2525.1: SO2525.1 - hypothetical protein (NCBI ptt file), at 2,655,618 to 2,655,998 SO2525.1 SO2527: SO2527 - transposase, IS91 family, putative (NCBI ptt file), at 2,656,428 to 2,657,456 SO2527 Position (kb) 2655 2656Strain fitness (log2 ratio) -2 -1 0 1at 2654.699 kb on + strandat 2654.841 kb on + strandat 2654.914 kb on + strandat 2655.123 kb on + strandat 2655.132 kb on - strandat 2655.214 kb on - strandat 2655.263 kb on - strandat 2655.469 kb on - strandat 2655.469 kb on - strandat 2655.755 kb on + strand, within SO2525.1at 2655.793 kb on - strand, within SO2525.1at 2655.877 kb on - strand, within SO2525.1

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine (N)
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2,654,699 + -0.2
2,654,841 + -1.4
2,654,914 + -1.9
2,655,123 + -0.9
2,655,132 - +0.2
2,655,214 - -0.3
2,655,263 - +0.8
2,655,469 - +0.8
2,655,469 - -0.2
2,655,755 + SO2525.1 0.36 -0.6
2,655,793 - SO2525.1 0.46 -0.7
2,655,877 - SO2525.1 0.68 -0.2

Or see this region's nucleotide sequence