Experiment: L-Methionine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt narQ and narP overlap by 8 nucleotides narP and SO3983 are separated by 89 nucleotides SO3983 and SO3984 are separated by 179 nucleotides
SO3981: narQ - nitrate/nitrite sensor protein NarQ (NCBI ptt file), at 4,117,886 to 4,119,643
narQ
SO3982: narP - DNA-binding nitrate/nitrite response regulator (NCBI ptt file), at 4,119,636 to 4,120,265
narP
SO3983: SO3983 - conserved hypothetical protein (NCBI ptt file), at 4,120,355 to 4,120,729
SO3983
SO3984: SO3984 - magnesium transporter, putative (NCBI ptt file), at 4,120,909 to 4,121,874
SO3984
Position (kb) 4119
4120
4121 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4118.685 kb on + strand, within narQ at 4118.685 kb on + strand, within narQ at 4118.693 kb on - strand, within narQ at 4118.693 kb on - strand, within narQ at 4118.693 kb on - strand, within narQ at 4118.795 kb on - strand, within narQ at 4118.805 kb on - strand, within narQ at 4118.805 kb on - strand, within narQ at 4118.805 kb on - strand, within narQ at 4118.811 kb on + strand, within narQ at 4118.841 kb on - strand, within narQ at 4118.976 kb on + strand, within narQ at 4119.045 kb on + strand, within narQ at 4119.106 kb on + strand, within narQ at 4119.126 kb on + strand, within narQ at 4119.134 kb on - strand, within narQ at 4119.236 kb on + strand, within narQ at 4119.244 kb on - strand, within narQ at 4119.288 kb on + strand, within narQ at 4119.365 kb on + strand, within narQ at 4119.365 kb on + strand, within narQ at 4119.373 kb on - strand, within narQ at 4119.554 kb on + strand at 4119.759 kb on - strand, within narP at 4119.759 kb on - strand, within narP at 4119.767 kb on - strand, within narP at 4119.769 kb on + strand, within narP at 4119.847 kb on - strand, within narP at 4119.847 kb on - strand, within narP at 4119.969 kb on + strand, within narP at 4120.093 kb on + strand, within narP at 4120.203 kb on + strand at 4120.214 kb on + strand at 4120.216 kb on - strand at 4120.250 kb on - strand at 4120.396 kb on - strand, within SO3983 at 4120.626 kb on + strand, within SO3983 at 4120.690 kb on - strand, within SO3983 at 4120.931 kb on + strand at 4120.939 kb on - strand at 4120.939 kb on - strand at 4120.971 kb on - strand at 4120.978 kb on - strand at 4120.995 kb on + strand at 4121.010 kb on + strand, within SO3984 at 4121.018 kb on - strand, within SO3984 at 4121.056 kb on + strand, within SO3984 at 4121.064 kb on - strand, within SO3984 at 4121.064 kb on - strand, within SO3984 at 4121.123 kb on - strand, within SO3984 at 4121.148 kb on - strand, within SO3984 at 4121.196 kb on + strand, within SO3984
Per-strain Table
Position Strand Gene LocusTag Fraction L-Methionine (N) remove 4,118,685 + narQ SO3981 0.45 -0.0 4,118,685 + narQ SO3981 0.45 -1.7 4,118,693 - narQ SO3981 0.46 +0.2 4,118,693 - narQ SO3981 0.46 -1.5 4,118,693 - narQ SO3981 0.46 -2.4 4,118,795 - narQ SO3981 0.52 -0.5 4,118,805 - narQ SO3981 0.52 -1.7 4,118,805 - narQ SO3981 0.52 -2.0 4,118,805 - narQ SO3981 0.52 +0.6 4,118,811 + narQ SO3981 0.53 -1.5 4,118,841 - narQ SO3981 0.54 +1.2 4,118,976 + narQ SO3981 0.62 -0.5 4,119,045 + narQ SO3981 0.66 -2.5 4,119,106 + narQ SO3981 0.69 -1.5 4,119,126 + narQ SO3981 0.71 +0.2 4,119,134 - narQ SO3981 0.71 +0.6 4,119,236 + narQ SO3981 0.77 -3.0 4,119,244 - narQ SO3981 0.77 -0.5 4,119,288 + narQ SO3981 0.80 -0.2 4,119,365 + narQ SO3981 0.84 +0.0 4,119,365 + narQ SO3981 0.84 -0.5 4,119,373 - narQ SO3981 0.85 +1.8 4,119,554 + -1.0 4,119,759 - narP SO3982 0.20 -1.7 4,119,759 - narP SO3982 0.20 -2.0 4,119,767 - narP SO3982 0.21 -0.1 4,119,769 + narP SO3982 0.21 +0.2 4,119,847 - narP SO3982 0.33 +0.4 4,119,847 - narP SO3982 0.33 -0.8 4,119,969 + narP SO3982 0.53 +0.2 4,120,093 + narP SO3982 0.73 -1.6 4,120,203 + +0.0 4,120,214 + +1.0 4,120,216 - -0.1 4,120,250 - -0.9 4,120,396 - SO3983 0.11 +1.2 4,120,626 + SO3983 0.72 +1.7 4,120,690 - SO3983 0.89 +1.0 4,120,931 + +0.4 4,120,939 - -0.7 4,120,939 - -2.2 4,120,971 - -0.4 4,120,978 - -3.4 4,120,995 + +1.3 4,121,010 + SO3984 0.10 +0.9 4,121,018 - SO3984 0.11 -1.6 4,121,056 + SO3984 0.15 -0.4 4,121,064 - SO3984 0.16 -4.1 4,121,064 - SO3984 0.16 -0.2 4,121,123 - SO3984 0.22 +0.6 4,121,148 - SO3984 0.25 +0.6 4,121,196 + SO3984 0.30 -2.2
Or see this region's nucleotide sequence