Experiment: L-Methionine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO3772 and SO3774 are separated by 272 nucleotides SO3774 and SO3775 are separated by 674 nucleotides
SO3772: SO3772 - conserved hypothetical protein (NCBI ptt file), at 3,921,478 to 3,922,026
SO3772
SO3774: SO3774 - proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.5.2; EC 1.2.1.88) (from data) , at 3,922,299 to 3,925,478
SO3774
SO3775: SO3775 - hypothetical protein (NCBI ptt file), at 3,926,153 to 3,926,887
SO3775
Position (kb)
3922
3923
3924
3925
3926 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3921.606 kb on - strand, within SO3772 at 3921.670 kb on + strand, within SO3772 at 3921.679 kb on - strand, within SO3772 at 3921.684 kb on - strand, within SO3772 at 3921.703 kb on - strand, within SO3772 at 3921.728 kb on - strand, within SO3772 at 3921.935 kb on - strand, within SO3772 at 3921.995 kb on - strand at 3922.162 kb on - strand at 3922.165 kb on - strand at 3922.358 kb on + strand at 3922.358 kb on + strand at 3922.358 kb on + strand at 3922.358 kb on + strand at 3922.366 kb on - strand at 3922.366 kb on - strand at 3922.366 kb on - strand at 3922.575 kb on - strand at 3922.580 kb on - strand at 3922.601 kb on - strand at 3922.621 kb on + strand, within SO3774 at 3922.697 kb on + strand, within SO3774 at 3922.700 kb on - strand, within SO3774 at 3922.711 kb on + strand, within SO3774 at 3922.899 kb on - strand, within SO3774 at 3922.901 kb on - strand, within SO3774 at 3922.901 kb on - strand, within SO3774 at 3923.014 kb on - strand, within SO3774 at 3923.117 kb on - strand, within SO3774 at 3923.135 kb on + strand, within SO3774 at 3923.181 kb on - strand, within SO3774 at 3923.227 kb on + strand, within SO3774 at 3923.227 kb on + strand, within SO3774 at 3923.300 kb on + strand, within SO3774 at 3923.300 kb on + strand, within SO3774 at 3923.308 kb on - strand, within SO3774 at 3923.411 kb on + strand, within SO3774 at 3923.459 kb on + strand, within SO3774 at 3923.484 kb on + strand, within SO3774 at 3923.484 kb on + strand, within SO3774 at 3923.492 kb on - strand, within SO3774 at 3923.559 kb on + strand, within SO3774 at 3923.767 kb on - strand, within SO3774 at 3923.855 kb on - strand, within SO3774 at 3923.982 kb on - strand, within SO3774 at 3924.002 kb on + strand, within SO3774 at 3924.002 kb on + strand, within SO3774 at 3924.022 kb on - strand, within SO3774 at 3924.119 kb on - strand, within SO3774 at 3924.156 kb on - strand, within SO3774 at 3924.190 kb on - strand, within SO3774 at 3924.198 kb on - strand, within SO3774 at 3924.204 kb on + strand, within SO3774 at 3924.310 kb on + strand, within SO3774 at 3924.484 kb on - strand, within SO3774 at 3924.589 kb on + strand, within SO3774 at 3924.597 kb on - strand, within SO3774 at 3924.627 kb on - strand, within SO3774 at 3924.822 kb on + strand, within SO3774 at 3924.830 kb on - strand, within SO3774 at 3924.830 kb on - strand, within SO3774 at 3924.830 kb on - strand, within SO3774 at 3924.830 kb on - strand, within SO3774 at 3924.832 kb on + strand, within SO3774 at 3924.865 kb on + strand, within SO3774 at 3925.012 kb on - strand, within SO3774 at 3925.033 kb on - strand, within SO3774 at 3925.036 kb on + strand, within SO3774 at 3925.167 kb on - strand at 3925.288 kb on - strand at 3925.288 kb on - strand at 3925.313 kb on + strand at 3925.318 kb on + strand at 3925.336 kb on + strand at 3925.454 kb on - strand at 3925.504 kb on - strand at 3925.780 kb on + strand at 3925.792 kb on + strand at 3925.833 kb on + strand at 3925.841 kb on - strand at 3925.842 kb on - strand at 3925.842 kb on - strand at 3926.018 kb on + strand at 3926.056 kb on - strand at 3926.121 kb on - strand at 3926.128 kb on - strand at 3926.340 kb on + strand, within SO3775 at 3926.356 kb on + strand, within SO3775 at 3926.450 kb on + strand, within SO3775
Per-strain Table
Position Strand Gene LocusTag Fraction L-Methionine (N) remove 3,921,606 - SO3772 0.23 +0.4 3,921,670 + SO3772 0.35 -0.6 3,921,679 - SO3772 0.37 +1.5 3,921,684 - SO3772 0.38 -1.5 3,921,703 - SO3772 0.41 +0.6 3,921,728 - SO3772 0.46 -3.1 3,921,935 - SO3772 0.83 -0.1 3,921,995 - -0.3 3,922,162 - -0.4 3,922,165 - +0.4 3,922,358 + -0.6 3,922,358 + +1.0 3,922,358 + -0.7 3,922,358 + -1.2 3,922,366 - +0.3 3,922,366 - -0.3 3,922,366 - +1.4 3,922,575 - -1.5 3,922,580 - -1.3 3,922,601 - +0.7 3,922,621 + SO3774 0.10 +0.2 3,922,697 + SO3774 0.13 +0.7 3,922,700 - SO3774 0.13 -0.4 3,922,711 + SO3774 0.13 -2.2 3,922,899 - SO3774 0.19 +0.0 3,922,901 - SO3774 0.19 +2.0 3,922,901 - SO3774 0.19 -1.1 3,923,014 - SO3774 0.22 +0.4 3,923,117 - SO3774 0.26 +1.3 3,923,135 + SO3774 0.26 -0.2 3,923,181 - SO3774 0.28 +1.2 3,923,227 + SO3774 0.29 +1.2 3,923,227 + SO3774 0.29 +1.0 3,923,300 + SO3774 0.31 -0.2 3,923,300 + SO3774 0.31 -0.2 3,923,308 - SO3774 0.32 +0.2 3,923,411 + SO3774 0.35 -4.2 3,923,459 + SO3774 0.36 +1.4 3,923,484 + SO3774 0.37 -0.7 3,923,484 + SO3774 0.37 +0.4 3,923,492 - SO3774 0.38 -2.4 3,923,559 + SO3774 0.40 +1.1 3,923,767 - SO3774 0.46 +0.4 3,923,855 - SO3774 0.49 +1.7 3,923,982 - SO3774 0.53 +0.3 3,924,002 + SO3774 0.54 +1.6 3,924,002 + SO3774 0.54 -1.2 3,924,022 - SO3774 0.54 -2.5 3,924,119 - SO3774 0.57 -1.2 3,924,156 - SO3774 0.58 +1.2 3,924,190 - SO3774 0.59 +1.1 3,924,198 - SO3774 0.60 +0.9 3,924,204 + SO3774 0.60 +0.1 3,924,310 + SO3774 0.63 +0.4 3,924,484 - SO3774 0.69 +0.2 3,924,589 + SO3774 0.72 -1.0 3,924,597 - SO3774 0.72 -1.9 3,924,627 - SO3774 0.73 -0.2 3,924,822 + SO3774 0.79 +0.6 3,924,830 - SO3774 0.80 +1.2 3,924,830 - SO3774 0.80 +0.7 3,924,830 - SO3774 0.80 +1.2 3,924,830 - SO3774 0.80 -1.3 3,924,832 + SO3774 0.80 +1.3 3,924,865 + SO3774 0.81 +1.8 3,925,012 - SO3774 0.85 +1.2 3,925,033 - SO3774 0.86 -1.7 3,925,036 + SO3774 0.86 -0.4 3,925,167 - -1.1 3,925,288 - +0.4 3,925,288 - +0.4 3,925,313 + +1.6 3,925,318 + -0.0 3,925,336 + +0.0 3,925,454 - +0.1 3,925,504 - -3.3 3,925,780 + -0.9 3,925,792 + +1.3 3,925,833 + -1.7 3,925,841 - -0.5 3,925,842 - +1.2 3,925,842 - -1.7 3,926,018 + +0.7 3,926,056 - -2.0 3,926,121 - -1.7 3,926,128 - +1.0 3,926,340 + SO3775 0.25 -1.1 3,926,356 + SO3775 0.28 +0.8 3,926,450 + SO3775 0.40 +0.3
Or see this region's nucleotide sequence